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Lj6g3v2080300.2

Overview

Field Value
Gene ID Lj6g3v2080300
Transcript ID Lj6g3v2080300.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: B3 domain-containing protein Os07g0563300-like [Cicer arietinum] gi|502077671|ref|XP_004485711.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23336
1 145 145 0 –
PANTHER
PTHR23336:SF10
1 145 145 0 –
PANTHER
PTHR23336:SF10
165 817 653 0 –
PANTHER
PTHR23336
165 817 653 0 –
MobiDBLite
mobidb-lite
219 306 88 – –
Gene3D
G3DSA:2.40.330.10
329 444 116 2.60E-29
IPR015300
SUPERFAMILY
SSF101936
334 437 104 4.45E-18
IPR015300
CDD
cd10017
335 436 102 3.24E-20
IPR003340
SMART
SM01019
337 438 102 2.30E-19
IPR003340
ProSiteProfiles
PS50863
337 438 102 10.518
IPR003340
Pfam
PF02362
337 436 100 2.30E-14
IPR003340
MobiDBLite
mobidb-lite
439 460 22 – –
ProSiteProfiles
PS51050
563 613 51 14.286
IPR011124
Pfam
PF07496
568 610 43 9.70E-12
IPR011124
Coils
Coil
713 738 26 – –
MobiDBLite
mobidb-lite
717 816 100 – –
MobiDBLite
mobidb-lite
830 883 54 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj6g3v2080300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2080300.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.