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Lj6g3v2168640.1

Overview

Field Value
Gene ID Lj6g3v2168640
Transcript ID Lj6g3v2168640.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor ILR3-like [Fragaria vesca subsp]. vesca] gi|470148197|ref|XP_004309656.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23042
2 221 220 8.20E-104 –
PANTHER
PTHR23042:SF67
2 221 220 8.20E-104 –
MobiDBLite
mobidb-lite
24 66 43 – –
ProSiteProfiles
PS50888
60 111 52 12.411
IPR011598
CDD
cd00083
64 116 53 4.07E-08 –
Pfam
PF00010
64 111 48 1.50E-08
IPR011598
SUPERFAMILY
SSF47459
66 139 74 5.89E-13
IPR011598
SMART
SM00353
66 117 52 7.20E-10
IPR011598
Gene3D
G3DSA:4.10.280.10
67 124 58 3.20E-12
IPR011598
Coils
Coil
101 163 63 – –
Gene3D
G3DSA:1.20.5.170
125 160 36 6.00E-04 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj6g3v2168640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2168640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.