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Lj6g3v2193620.1

Overview

Field	Value
Gene ID	Lj6g3v2193620
Transcript ID	Lj6g3v2193620.1
Lotus japonicus genome version	MG20 v3.0
Description
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32370 View details on PTHR32370 Search for proteins/transripts with this domain View external data on PTHR32370	1	187	187	1.00E-271	–
PANTHER	PTHR32370:SF6 View details on PTHR32370:SF6 Search for proteins/transripts with this domain View external data on PTHR32370:SF6	1	187	187	1.00E-271	IPR029959 Show description in modal box View details on IPR029959 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.710.10 View details on G3DSA:3.30.710.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.710.10	8	44	37	7.60E-04	–
SUPERFAMILY	SSF54695 View details on SSF54695 Search for proteins/transripts with this domain View external data on SSF54695	8	44	37	4.32E-05	IPR011333 Show description in modal box View details on IPR011333 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51649 View details on PS51649 Search for proteins/transripts with this domain View external data on PS51649	141	418	278	65.509	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03000 View details on PF03000 Search for proteins/transripts with this domain View external data on PF03000	141	404	264	5.90E-80	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR32370 View details on PTHR32370 Search for proteins/transripts with this domain View external data on PTHR32370	209	404	196	1.00E-271	–
PANTHER	PTHR32370:SF6 View details on PTHR32370:SF6 Search for proteins/transripts with this domain View external data on PTHR32370:SF6	209	404	196	1.00E-271	IPR029959 Show description in modal box View details on IPR029959 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016567 View details of GO:0016567 AmiGO InterPro QuickGO	Biological process	Protein ubiquitination	The process in which one or more ubiquitin groups are added to a protein.	Subterm of View details of GO:0032446

Genome browser

LORE1 insertions 33

Expression data

Expression pattern

Expression pattern of Lj6g3v2193620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2193620.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.