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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2244450 |
| Transcript ID | Lj6g3v2244450.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: auxin-induced protein 5NG4-like [Glycine max] gi|356557527|ref|XP_003547067.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 242 | 242 | 6.10E-133 | ||
| PANTHER | 1 | 242 | 242 | 6.10E-133 | – | |
| Phobius | 1 | 39 | 39 | – | – | |
| TMHMM | 39 | 61 | 23 | – | – | |
| Phobius | 40 | 61 | 22 | – | – | |
| Pfam | 43 | 181 | 139 | 5.60E-15 | ||
| Phobius | 62 | 72 | 11 | – | – | |
| Phobius | 73 | 92 | 20 | – | – | |
| TMHMM | 73 | 92 | 20 | – | – | |
| Phobius | 93 | 111 | 19 | – | – | |
| SUPERFAMILY | 101 | 186 | 86 | 1.28E-10 | – | |
| TMHMM | 107 | 129 | 23 | – | – | |
| Phobius | 112 | 130 | 19 | – | – | |
| Phobius | 131 | 136 | 6 | – | – | |
| TMHMM | 136 | 158 | 23 | – | – | |
| Phobius | 137 | 156 | 20 | – | – | |
| Phobius | 157 | 161 | 5 | – | – | |
| Phobius | 162 | 183 | 22 | – | – | |
| TMHMM | 163 | 182 | 20 | – | – | |
| Phobius | 184 | 250 | 67 | – | – | |
| MobiDBLite | 219 | 250 | 32 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj6g3v2244450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2244450.1, powered by CORGI.
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