Transcript — View — Lotus Base

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LotjaGi1g1v0001600.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0001600
Transcript ID	LotjaGi1g1v0001600.1
Related isoforms 1	LotjaGi1g1v0001600.2
Lotus japonicus genome version	Gifu v1.2
Description	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT4G38370.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp\|P50201\|MAS12_AGRRH Agropine synthesis reductase; TrEMBL-Plants: tr\|A0A0B2SRK5\|A0A0B2SRK5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0001600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:547809..551226) extracted from Lotus japonicus Gifu genome v1.2.

CAACAGAGGCAAAACCCCCAAATAAAGGAACCCTAAATCTCAATTCATCCAATTTCAAATAGCACAGAAACCACAAAGCT ACGTTTAATCATAATTGCCATCATTCAAACATTGATTTGGAATTAAGAACAAAAACACAAACTCTTCCAAGTAGAACAAG AAACAATGGCTTGATGATGGTGATTTGGGGTTCACCCTTGCTGGATCTGGACAAAAAAGGTTTTCTTTGCTCATCCTTTT CCTTGTTCTTCATCTTGTTGGAACTTGGATGAACAATGGGAGAGAAAAGTTATTATCTTTCTCAGATTTGGGATGAGAAC GTGAGCAAGTAGAAGAGACGTGATGGTTTTTTTTTTTTGGGTTTTTTTTTGGATTGGGTGAGAGAGGGATTAAGGAGGAA GATGAGGAAGAAGTTGAAGAACAAAGTGGGAATTGAGTTTCTGAGTTTTTGGGTTTCTAGGTAGGATGAGGTTGAAGGGG GGAGAAATCGATGGTGGGGTTCTGACTCAGAATCTCAACACCAACGCTTCCTGTGAAATACCCCAAGTTTCTGTGTCACC ACAAGAACCAAAAAATAGTGCAGAGAAAGCAGAGCACCAAAACACGAACATGGTAAGTAAAGGTGAAGGAAGATGACACT GCTTTTGAGTTAGCACAGTAAAAATATTTGAGCTTTGTAATTTGTTCATGCATGAGATGAAAAATGAAATCCTTGTAGAA AAAGGGTAGTTTGAATAGTTGAAATTTGAAGTGAGTTACCTGGTACAGAACTTCTGGGCTTTGAGTTTGAAGATGGATGA AATATTGATGAAGATTAATAAGGTTAGGTTTAATTAACTAATTTGGGGTAATTTAGGTTACTAATTTAATTTAATTTTCT GATTTTTAATTTATTTTTAATTTTTAATTTATATTTAATTTATTTTAAAAATCAACATAAGCAAATTTAATACATTCAGC GTGACACTTCATCCCTCGCCGGAGCTCCGGACTCCGGCGAGGACTTGCTCCAAACGATTTATAAAGAAAAGGAGCTTTTC CACAAATTTTTCTGATCAGGGACCTGGTTCAGACGGCGAGACAAAAACAAGGACTAATTTGAGGATTAAGCCATCTGTTT ATTACAGAATAGAGATAGTAGTGAAAATCAAATCAAATGAAACAATGTGTGTGGTAACGAAGAACAGATACTGGGTTCTG AGGCATGGCAAGAGTATTCCCAACGAGCGAGGACTCATTGTTTCCTCCATGGTTAGGTTTCGTTTTATTTCGTTTCTTGT TTTATGCAAACCAATCTTATCATTTGTGATTATTAATTGGTTAAATAAATGGATTGAAATCACAGGAAAATGGCATACGC CCTGAATTCCAATTGGCCACCGACGGTGTTAGTCAAGCACAACTCGCTGCCAAATTATTCCACAAGGTATGTATGTTGTA TATTTATTTATGAATTGCAGAAAAATCAAAGTAAAACTGAAGTGAACCAAAGACCATGAGATTTGATGTTGAAAATGGAT CATGCAATCACTCAACCTAAGAACTCCACTCCCATGTCCCAAATTTCAATTAATTATACCACATCATCTTCTCTATATGC AATGCATTATAGAATACCAACTAGTCTTAAGGCTTAACTAACAGTACGTGTTCTGGACAGGAACTAGAGGCTAATGATGT ACCACTTGCTAATGTACGCATTTGCTACTCCCCATTTTCAAGAACCACCCACACAGCAAAGATTGTTGCAACTGTCTTGA ATCTTCCTTTTGAAGGCCCCCAATGTAAGGTCAGTGAGAGCCTTTCAAATTCAACCAACCAATTTGTTACTTTGGTTGCC ATTTGCCCTGTATAATGCAGCACGAGAAATACCCCAAACCTCTCTGCTCATCCTTAACTACCACTTCACCACTTGCTTAT TCATGTGCTTTTGCCCTCAAAGTTCATGATTTTTTATTGATGAATATCATGTATCTTTTTTCCTGTTAGGTCATCGAAGA TCTTCGAGAACGCTTCTTTGGTCCTTCTTTTGAACTTCTGTCGCATGATAAAGTAAGTGATGGTCAATGAAACTTTGTCC ATCCGTGTTGCACTTCACCATTTAATTCTTTGCATTATATGTGGTTGTAGAAGAAATATTGTGACTATTTCAAGGCCATT CGGCGTCACTATTTAGATATTGTGTGCATTAGATATGCTAAAACCTTTTCTGTAACATTGATTTTCTCTTTTCATTCATC AACAGTATGAGCAAATTTGGGAACTAGATGAAAAAGATCCACTTGTTGGGCCAGAAGGAGGGGAAAGTGTTAAGGATGTT GCCTGTAGACTTGCAAGAGCAATGGCTGTTATGGAATCGGAATTTGAAGGGTAGTGATTTTTGTCTTAAATATCATTTAA AATCTTGTAGCGTTATTGTTTCTTCTAGCACAAATCTGTGAAGCAAATCTATTATGGGTTTGTAGCTAGTGCAAACTGCC ACAAGGGAGACTTCGATAAATGCATTCAAAATTTAGAAAAAGTTTTTTTTTTGATTCTGACTTGTCTATGAAGCAGGTAT TTGATCTAAGGTTACAAAATATCATTCAACATCGAAATGTTCTTATTTCTTAAAGCATGTTTGGGTCTTTTTGTTCATAT TCTATCAACTAAATCAATTCTGTTCCACATTCTGCAGATGTGCAGTTTTGGTTGTTAGCCATGGGGATACCCTACAAATC TTGCAAACAATTCTGCATGCAGCTAATCAACACAAGGAACCCGCTTATGATGACTTAGCATCAATACTAAATGCAGTTCA GGTGGCACCAGTCTTGTCACAACACCGCAAATATGCTTTGCTTACCGGAGAGCTTAGGGGAGTCCTTTGAGATTTTGACT ATTTGAGGCCTAGCAGAAAGGCAACTGTTTTTTGTTGGAATTGGATCCCCTATTGTTGCTAAACTATTAAACCGGGTTAA TTGTTAAATTAGTCCCTGATTTTGTAAGCGAGTTTGGTTTTAGTCTCTCGGCAAGAAAATGACATTTAGTGGCAATAATT TATGAATTACTGGCTGTTTTTTACCGCCACTAAACGTCACTTTTCTGCAAATGACTAAAATCAAACTTTCTTACAAAATC AGAGACTAATTTGATCATTAACCCTATTAAAGCAACATGTGTGCATGTCTAAGATTTTGAGCAGGCCTCGTACAAAAAAT CACGTGAGAGAACTTTCTGATTACATTTGAACATACTAAACAGCCTGCAAATTTTTTGGAATGGGGATGTAAATCCATTT TGGTTGCTCCCGTTCAATTTATCGGTTTATTATCATATCCAAAACTTCAAAAGTAATTTTCTTATGGAGATAATGATCCT CTTTCTGTGGAAAAATTGCAGTTTGACAATGATTATATGTTGGATCTTTTTTTGGTGG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0001600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGTGTGGTAACGAAGAACAGATACTGGGTTCTGAGGCATGGCAAGAGTATTCCCAACGAGCGAGGACTCATTGTTTC CTCCATGGAAAATGGCATACGCCCTGAATTCCAATTGGCCACCGACGGTGTTAGTCAAGCACAACTCGCTGCCAAATTAT TCCACAAGGAACTAGAGGCTAATGATGTACCACTTGCTAATGTACGCATTTGCTACTCCCCATTTTCAAGAACCACCCAC ACAGCAAAGATTGTTGCAACTGTCTTGAATCTTCCTTTTGAAGGCCCCCAATGTAAGGTCATCGAAGATCTTCGAGAACG CTTCTTTGGTCCTTCTTTTGAACTTCTGTCGCATGATAAATATGAGCAAATTTGGGAACTAGATGAAAAAGATCCACTTG TTGGGCCAGAAGGAGGGGAAAGTGTTAAGGATGTTGCCTGTAGACTTGCAAGAGCAATGGCTGTTATGGAATCGGAATTT GAAGGATGTGCAGTTTTGGTTGTTAGCCATGGGGATACCCTACAAATCTTGCAAACAATTCTGCATGCAGCTAATCAACA CAAGGAACCCGCTTATGATGACTTAGCATCAATACTAAATGCAGTTCAGGTGGCACCAGTCTTGTCACAACACCGCAAAT ATGCTTTGCTTACCGGAGAGCTTAGGGGAGTCCTTTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0001600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCVVTKNRYWVLRHGKSIPNERGLIVSSMENGIRPEFQLATDGVSQAQLAAKLFHKELEANDVPLANVRICYSPFSRTTH TAKIVATVLNLPFEGPQCKVIEDLRERFFGPSFELLSHDKYEQIWELDEKDPLVGPEGGESVKDVACRLARAMAVMESEF EGCAVLVVSHGDTLQILQTILHAANQHKEPAYDDLASILNAVQVAPVLSQHRKYALLTGELRGVL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.40.50.1240 View details on G3DSA:3.40.50.1240 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1240	4	217	214	3.0E-27	IPR029033 Show description in modal box View details on IPR029033 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR47821 View details on PTHR47821 Search for proteins/transripts with this domain View external data on PTHR47821	5	224	220	1.0E-94	–
SMART	SM00855 View details on SM00855 Search for proteins/transripts with this domain View external data on SM00855	8	177	170	0.0033	IPR013078 Show description in modal box View details on IPR013078 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd07067 View details on cd07067 Search for proteins/transripts with this domain View external data on cd07067	8	181	174	1.24036E-11	IPR013078 Show description in modal box View details on IPR013078 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53254 View details on SSF53254 Search for proteins/transripts with this domain View external data on SSF53254	9	184	176	1.61E-23	IPR029033 Show description in modal box View details on IPR029033 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00300 View details on PF00300 Search for proteins/transripts with this domain View external data on PF00300	10	182	173	1.1E-20	IPR013078 Show description in modal box View details on IPR013078 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0001600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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