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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0004500 |
| Transcript ID | LotjaGi1g1v0004500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT3G13130.1 transmembrane protein; Swiss-Prot: sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2; TrEMBL-Plants: tr|I3T3V7|I3T3V7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0004500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:815112..816148) extracted from Lotus japonicus Gifu genome v1.2.
TAGTATGAGGGGGAACTTTCAACGTAATTACCCCTCCATGTTTCATTGTTCAGTATATATATATCCCTCTATTCATACCT CCCTTTCATCATAACTTGAGTTGTGAGTTGTGAGTTGTGACTTGTTAGTTGTTATCAAGGTCCAAACAGACATGGGTTAT TTCAAGTTTCTTCTTTCATTTTCTGTGTTGTCTGTTTTGTTTTCTGTCCTTCCCTTACTAAACCTTCATTCCTTGAAGCC ATTATTCCCCATGCAATTCTTTGGCTACACCGTTGACAAGAGCTACATCTTCCTTCTATGTAACAGCCTTCTAGTTTTTA TAGCCATCAACTCTGCTCCAATCAATCAATCTGATCAAAACAGCAACGAGAATATAAGCCACTCAGAATTCAACGTATCA TACACTGCAGCACCAATTGCTGATGAACATCCTGTGGAAACTGAATCCCCAGAAGAAGAACAAGAACAAGAACAAGAACA ACAAGAAGCAGAAGAACAAGAAGAAGAAGAGAGCTTGGTTACATTAGAAGCTGAAAATGTGCTTCCAGATACAAATGAAG ATGATGAAGAGGAAAATGCCCTTATGTTCATTGTTGAAGATGAGCATGAGGAATGTGGAGATGAGACGGAGGAGTTAAAT AAGAAATGTGAAGATTTTATTAAAAAGATGAAAGCTGCGTTCTGTTCAGAATCAGAGCCAATAGCTGATGGCAGTTTTTA TTTTGGTTATCAGAAATCATTGGTGGTTGTGAATTAAGTAGCAATGTTCCTTTTACATGAACATCTCTTGATCCTTTTTA GTTTACTTTAGCTCAGGGTTCCTTATTAAGTTTTTTATTGTAGGAATTAAATCCAGGCCTACATGGTTCTGTAGTCTGTA CTAGCTTCTGTTCTCTGTTTTATGTACAATGTGTTCTATTCTAGTGGAAATTTTATGCAAATCGTGTTAAGTGTTAACCT TCTCTATATGTCAAACTTGATTTATTTATTTATCCAAAAATTCATATTTCTTCTCACAAAAACACACCTCTTCTTAA
CDS sequence (LotjaGi1g1v0004500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTATTTCAAGTTTCTTCTTTCATTTTCTGTGTTGTCTGTTTTGTTTTCTGTCCTTCCCTTACTAAACCTTCATTC CTTGAAGCCATTATTCCCCATGCAATTCTTTGGCTACACCGTTGACAAGAGCTACATCTTCCTTCTATGTAACAGCCTTC TAGTTTTTATAGCCATCAACTCTGCTCCAATCAATCAATCTGATCAAAACAGCAACGAGAATATAAGCCACTCAGAATTC AACGTATCATACACTGCAGCACCAATTGCTGATGAACATCCTGTGGAAACTGAATCCCCAGAAGAAGAACAAGAACAAGA ACAAGAACAACAAGAAGCAGAAGAACAAGAAGAAGAAGAGAGCTTGGTTACATTAGAAGCTGAAAATGTGCTTCCAGATA CAAATGAAGATGATGAAGAGGAAAATGCCCTTATGTTCATTGTTGAAGATGAGCATGAGGAATGTGGAGATGAGACGGAG GAGTTAAATAAGAAATGTGAAGATTTTATTAAAAAGATGAAAGCTGCGTTCTGTTCAGAATCAGAGCCAATAGCTGATGG CAGTTTTTATTTTGGTTATCAGAAATCATTGGTGGTTGTGAATTAA
Protein sequence (LotjaGi1g1v0004500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGYFKFLLSFSVLSVLFSVLPLLNLHSLKPLFPMQFFGYTVDKSYIFLLCNSLLVFIAINSAPINQSDQNSNENISHSEF NVSYTAAPIADEHPVETESPEEEQEQEQEQQEAEEQEEEESLVTLEAENVLPDTNEDDEEENALMFIVEDEHEECGDETE ELNKKCEDFIKKMKAAFCSESEPIADGSFYFGYQKSLVVVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 4 | 181 | 178 | 4.8E-45 | – | |
| PANTHER | 4 | 181 | 178 | 4.8E-45 | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| TMHMM | 7 | 25 | 19 | - | – | |
| Phobius | 26 | 44 | 19 | - | – | |
| Phobius | 45 | 64 | 20 | - | – | |
| TMHMM | 45 | 64 | 20 | - | – | |
| Phobius | 65 | 201 | 137 | - | – | |
| MobiDBLite | 92 | 138 | 47 | - | – | |
| MobiDBLite | 96 | 124 | 29 | - | – | |
| Coils | 99 | 128 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0004500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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