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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0005200 |
| Transcript ID | LotjaGi1g1v0005200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT4G12730.1 FASCICLIN-like arabinogalactan 2; Swiss-Prot: sp|Q9SU13|FLA2_ARATH Fasciclin-like arabinogalactan protein 2; TrEMBL-Plants: tr|Q2PES4|Q2PES4_TRIPR Putative fasciclin-like arabinogalactan protein FLA2; Found in the gene: LotjaGi1g1v0005200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:844350..845609) extracted from Lotus japonicus Gifu genome v1.2.
TTCCCACTACTTGCCACTTACTCTCTTGTCTTCTTCTTCCTCATAGCAACCATGTCACTTCCTTCCTCCACCACCGCAGC CGCCGCCGCCAATGGCAGCCACAACATTACCCGCATTCTCGCCAAACACCCCGACTTCTCCACCTTCAACCACTACCTCA CCCTCACCCACCTCGCCGGCGAGATCAACCACCGCCAAACCATCACCATCCTCGCCATCGACAACGCCGCCATGTCCTCC CTCCTCGACAAGCACCTCACCCTCTCCACCCTAAAAAACGTCCTCTCCCTCCACGTCCTCGTCGACTACTTTGGCGCCAA AAAGCTCCACCAGATAACCAACGGAACCACCCTCGTCTCCTCCATGTTCCAGGCCACCGGCTCCGCCGCCGGAACCGCCG GCTACGTCAACATCACCAACCTCAAAGGAGGCAAAGTAGGCTTCGCCGCTGAGGACAACGACGGCCTCCACTCATTCTAC GTCAAATCAGTGGAAGAGCTTCCATACGTCATCTCTGTTCTCGAAATCTCTCAACCCCTGAGCTCCGCCGACGCCGAAGC ACCGACCGCAGCTCCGAGCGATATCGACGTCATCTCCATCATGTCCAAACAAGGCTGCAAAGCCTTCGCAGATTTACTCA GAACCTCGAAAGCTCTTCCCACATTCAAGGAAAACGTTAATGGCGGTTTAACCGTGTTCTGCCCCACCGACAGCGCCGTC AACGGATTCCTCCCCAAGTACAAGAACCTCACCGATTCCCAAAAGGTTTCTCTCTTGCTGTACCACGGTGTTCCTGTTTA CCAATCGTTGCAGATGCTCAAGTCCAACAACGGAATCATGAACACTCTGGCTACAGAGGGTGCTAACAAGTACGATTTTA CAGTGCAGAACGATGGGGAAGATGTGAATTTGGAAACCAAGGTTAACACTGCTGGGATTATTGGGACATTGATTGATCAA GACCCTTTTGTGGTGTACAAGATTAGCAAGGTGTTGATGCCTAGAGAGTTGTTTAAAGGTGTTACTGAGAAAACTGTGTC TCCTGCAGAGTCACCTAAGCCAGCAAAGAAGAAGAGTAAGAGCACTAAGAAGGGGAATGCTGATGATGATGCTGCAGATT CACCTGCAGATGGACCTGCAGATGATGACTCAGATAATCAGACAGCTGCTGATGACAACAGTGGTGTTACTGGATTGAAT CAAGGGTTCAGATTCACCATGGTTTTCTTCAGTTTGGTTATTGGATTTTTGGTTCTATAA
CDS sequence (LotjaGi1g1v0005200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACTTCCTTCCTCCACCACCGCAGCCGCCGCCGCCAATGGCAGCCACAACATTACCCGCATTCTCGCCAAACACCC CGACTTCTCCACCTTCAACCACTACCTCACCCTCACCCACCTCGCCGGCGAGATCAACCACCGCCAAACCATCACCATCC TCGCCATCGACAACGCCGCCATGTCCTCCCTCCTCGACAAGCACCTCACCCTCTCCACCCTAAAAAACGTCCTCTCCCTC CACGTCCTCGTCGACTACTTTGGCGCCAAAAAGCTCCACCAGATAACCAACGGAACCACCCTCGTCTCCTCCATGTTCCA GGCCACCGGCTCCGCCGCCGGAACCGCCGGCTACGTCAACATCACCAACCTCAAAGGAGGCAAAGTAGGCTTCGCCGCTG AGGACAACGACGGCCTCCACTCATTCTACGTCAAATCAGTGGAAGAGCTTCCATACGTCATCTCTGTTCTCGAAATCTCT CAACCCCTGAGCTCCGCCGACGCCGAAGCACCGACCGCAGCTCCGAGCGATATCGACGTCATCTCCATCATGTCCAAACA AGGCTGCAAAGCCTTCGCAGATTTACTCAGAACCTCGAAAGCTCTTCCCACATTCAAGGAAAACGTTAATGGCGGTTTAA CCGTGTTCTGCCCCACCGACAGCGCCGTCAACGGATTCCTCCCCAAGTACAAGAACCTCACCGATTCCCAAAAGGTTTCT CTCTTGCTGTACCACGGTGTTCCTGTTTACCAATCGTTGCAGATGCTCAAGTCCAACAACGGAATCATGAACACTCTGGC TACAGAGGGTGCTAACAAGTACGATTTTACAGTGCAGAACGATGGGGAAGATGTGAATTTGGAAACCAAGGTTAACACTG CTGGGATTATTGGGACATTGATTGATCAAGACCCTTTTGTGGTGTACAAGATTAGCAAGGTGTTGATGCCTAGAGAGTTG TTTAAAGGTGTTACTGAGAAAACTGTGTCTCCTGCAGAGTCACCTAAGCCAGCAAAGAAGAAGAGTAAGAGCACTAAGAA GGGGAATGCTGATGATGATGCTGCAGATTCACCTGCAGATGGACCTGCAGATGATGACTCAGATAATCAGACAGCTGCTG ATGACAACAGTGGTGTTACTGGATTGAATCAAGGGTTCAGATTCACCATGGTTTTCTTCAGTTTGGTTATTGGATTTTTG GTTCTATAA
Protein sequence (LotjaGi1g1v0005200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLPSSTTAAAAANGSHNITRILAKHPDFSTFNHYLTLTHLAGEINHRQTITILAIDNAAMSSLLDKHLTLSTLKNVLSL HVLVDYFGAKKLHQITNGTTLVSSMFQATGSAAGTAGYVNITNLKGGKVGFAAEDNDGLHSFYVKSVEELPYVISVLEIS QPLSSADAEAPTAAPSDIDVISIMSKQGCKAFADLLRTSKALPTFKENVNGGLTVFCPTDSAVNGFLPKYKNLTDSQKVS LLLYHGVPVYQSLQMLKSNNGIMNTLATEGANKYDFTVQNDGEDVNLETKVNTAGIIGTLIDQDPFVVYKISKVLMPREL FKGVTEKTVSPAESPKPAKKKSKSTKKGNADDDAADSPADGPADDDSDNQTAADDNSGVTGLNQGFRFTMVFFSLVIGFL VL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 384 | 384 | - | – | |
| PANTHER | 12 | 401 | 390 | 4.4E-169 | – | |
| PANTHER | 12 | 401 | 390 | 4.4E-169 | ||
| Gene3D | 16 | 135 | 120 | 8.7E-8 | ||
| ProSiteProfiles | 16 | 182 | 167 | 11.163 | ||
| SUPERFAMILY | 22 | 135 | 114 | 3.92E-17 | ||
| Pfam | 27 | 104 | 78 | 3.7E-6 | ||
| SUPERFAMILY | 173 | 318 | 146 | 9.81E-20 | ||
| ProSiteProfiles | 176 | 315 | 140 | 13.389 | ||
| Gene3D | 181 | 320 | 140 | 5.4E-10 | ||
| Pfam | 189 | 317 | 129 | 1.6E-15 | ||
| SMART | 214 | 318 | 105 | 7.5E-20 | ||
| MobiDBLite | 325 | 376 | 52 | - | – | |
| MobiDBLite | 333 | 354 | 22 | - | – | |
| MobiDBLite | 357 | 371 | 15 | - | – | |
| Phobius | 385 | 401 | 17 | - | – | |
| Phobius | 402 | 402 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0005200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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