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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0006000 |
| Transcript ID | LotjaGi1g1v0006000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GDP-dissociation inhibitor 1; TAIR: AT3G07880.1 Immunoglobulin E-set superfamily protein; Swiss-Prot: sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1; TrEMBL-Plants: tr|A0A0R0GGY5|A0A0R0GGY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0006000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:897198..900106) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAACATCCTAGGAGACAAACAAGCAATTTTTTCCTGTCTTTTTTTTTGCTTCTGGTTATTCATCATTGTTGGGTTTT GTGAGACACAATCTGTTATTGCTTTTTTAGGTTTCACTAATAACCCTTCAAAAGGTTTTTGCATTGTTGTCTTTCTGTTG GGGGGTTTCTTTCTTTTGGTGCATTTGATCACCATTGTTGTTATTATTCCCTGTGAGTGTTAATTACATGAGTTAAACAC CTTGTCTGTCAATTGGAGCTGTTTCAAGTTCCAAGAAGATGGGGTTTGATGATGAAAAGAAGGCAGGGGAAGAAAATGAA GAACATCATCATCGTAGAAGTGAATCTGAGCCACCTTTGAGCAGGCATGCGAGTGAGTCTTCAATCTATGCAACTGAGGA TGATGATGATGAAGTTGCATCTAGAATACAACTGGGTCCTCAGTGCACCCTTAAAGAACACCTTGAGAAAGATAAGGTTT GTACATGTCGTATGGAATTAATGATGTCATGTTTCTTACATTCTTCCTTATTAATTCTCTGTTCTGTTCTGTTTTTTTAT ATGTTGGATTCTGGGATTGAAGGATGATGAGAGTTTAAGGAGATGGAAAGAACAACTCCTTGGGAGTGTGGATGTAAACA ATGTTGCAGGTAAATACACACATCCTTAAATCATTTTCTTACAGGGTAACATGTTTGGTTCTACCAGGAAAAACTCTAAA ATCACTTCTGGTTCTGGTTAGAAGCTATAAGTTTTAGCTTTTGAATAAGTGTGTAAAACTAAACATGCTATGAATCAACT ATGTATTTGCGTGTTCAGATTAGCGTTGTCATGATTAATTTTGGATATAATTTATTTTAGTAATGTTGATTTTGATAAAA GTCACATGAAAGTGTTGTTATTTATGTTCGCATACATTATGATAAAAGTGATTTCTATATGGTAATGTTGCTAAATCGAG TTATGAAATGTCACATTTGATTATGTCAAGCTCAAAAGCTACTCTCTAGCTTCTCCACAGAATTGATTTTGGGACTAAAA TAAATGCTCCAAATCATTTGCCTAACCAATATATAACTACTAACTACTCAAAAGTTATATATAATTGATTATGGTCATGA AATTGATTTATGCCAAACACATGTAAATTTGCATTATTATTTATTTCCAAAGAATAGAAGGTTTTGATGCTCCCATGCTG CTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTAATGCATGTTCTCTTTTCGGTTA ATGTATCAGTTAACTTATGTTAGTGTTTCTTAATTTCCAGAAACGCTAGATCCTGAAGTGAAAATTACTAGCTTATCTAT CATCTCTCCTGATAGAGGTGACATTGTTCTTCCTGTTCCTGAAAGTGGAAACCCAAAGGGTTTATGGTTCACTCTTAAAG AAGGCAGCCATTACTGTTTGAAATTCACCTTTGTAGTGAGTAATAATATTGTCTCAGGCTTGAAATACACCAATACTGTT TGGAAGACCGGTGTTAAGGGTAAGCTTTTTATGCCTTACTTCTCCACCAATATTCTAATTATAGCATGTTTAAATCAGCT TCTCTTTATTAGAATCAATTATGTAAGTCAGAAGTTATTTACAGAAACTTCTCCTTAGAATTAATTCCGGCTAACCATCC AAACACTTAATATGCAAGATTGCAAACGCCTTGAAACATTCTCTTACAACAAGTCTCGTAATTTCAGTGGACAGCTCAAA AGAGATGCTTGGAACTTTCAGCCCTCAGACAGAGCCTTACACACATGAGATGGCAGAAGAAACCACGCCCTCTGGGATAT TTGCAAGAGGAGCATACTCTGCAAGATCAAAGGTAGGTAATATTACCATTTAGATCATGAATTATAAACACATGCATCTT TGTTTATTATGTAAAGACATGTTGGTGAGATTTGAGAATAACATTTCTGTTCTGTTTTTTTTTTCCTTATATGATACTGA ATTAATGATACAATAAACCATATATTTTTTCTTTTTTCTTTTGCAGTTTCTTGATGATGACAACAAATGCTACTTGGAGA TCAACTATACTTTTGATATCAGGAAGGATTGGGCTTGAACATTGATTGCAATCTTCTCTTCCCAACCTGCAATTGCTGTA GTAACTCTCCTTCATTTAGTCAAATACATGTTAATTTCTATTTGATGATTTAAGAAATCCAAATGTCCTTGATACTAAAT TCCTGCTTGTACCGTCAAAAAAAAAATCCTGCTTGTACCATTTTATTTTATTTTTTTACTAGAAGAGACAAACTCACACA GGACTATTTATTTAGTACTTTTATCCATAAAATTACCATTAGTAGTTACTTTTTCAGATGCTTTTTTTCTAGAAAAAGTT GAGATAAAAATTTCCTTCTAATGCCATTAGTAGTTAATATTTTCTAATAATTTTTGTTGAACTTACTTATTAAAATTGAA TATATCACCTTTTCTTTCTAACTTTATTTTAGTCCCATTGTGTAGAAAACACATCTAAACTTGGAAAACCTGGCCCAATG TGTTAGATTTGGATAGTTGCATAAGCCTACTCAATTTAGTGAAGCTTGACCACTAGGCCCATGTGAGTCTTGAACGTGCC CTAGCTTGATGACTCTCATCTCAGTCTCCTCCACCTTGGCTGCTTTATTGTAATTGCCAATTGGCATCTAACTGTTTATA TCTAAACTTGATGGACATCAACCTTTCAAAAGAGTTTTTAAGATGATTTTTCCAAAAGCTGATTCTAGTTATTGTACTTA GATGGCTGATTGAAATGATGAGTAATGAACTGAACCATAAGCAATAGTTTTAAGCTAATTTGATAAGGTTATGAAAATGA GCTTGAAAATTTCTATAGGTAGATTATAA
CDS sequence (LotjaGi1g1v0006000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTTGATGATGAAAAGAAGGCAGGGGAAGAAAATGAAGAACATCATCATCGTAGAAGTGAATCTGAGCCACCTTT GAGCAGGCATGCGAGTGAGTCTTCAATCTATGCAACTGAGGATGATGATGATGAAGTTGCATCTAGAATACAACTGGGTC CTCAGTGCACCCTTAAAGAACACCTTGAGAAAGATAAGGATGATGAGAGTTTAAGGAGATGGAAAGAACAACTCCTTGGG AGTGTGGATGTAAACAATGTTGCAGAAACGCTAGATCCTGAAGTGAAAATTACTAGCTTATCTATCATCTCTCCTGATAG AGGTGACATTGTTCTTCCTGTTCCTGAAAGTGGAAACCCAAAGGGTTTATGGTTCACTCTTAAAGAAGGCAGCCATTACT GTTTGAAATTCACCTTTGTAGTGAGTAATAATATTGTCTCAGGCTTGAAATACACCAATACTGTTTGGAAGACCGGTGTT AAGGTGGACAGCTCAAAAGAGATGCTTGGAACTTTCAGCCCTCAGACAGAGCCTTACACACATGAGATGGCAGAAGAAAC CACGCCCTCTGGGATATTTGCAAGAGGAGCATACTCTGCAAGATCAAAGTTTCTTGATGATGACAACAAATGCTACTTGG AGATCAACTATACTTTTGATATCAGGAAGGATTGGGCTTGA
Protein sequence (LotjaGi1g1v0006000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFDDEKKAGEENEEHHHRRSESEPPLSRHASESSIYATEDDDDEVASRIQLGPQCTLKEHLEKDKDDESLRRWKEQLLG SVDVNNVAETLDPEVKITSLSIISPDRGDIVLPVPESGNPKGLWFTLKEGSHYCLKFTFVVSNNIVSGLKYTNTVWKTGV KVDSSKEMLGTFSPQTEPYTHEMAEETTPSGIFARGAYSARSKFLDDDNKCYLEINYTFDIRKDWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 226 | 226 | 6.9E-134 | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| MobiDBLite | 1 | 52 | 52 | - | – | |
| PANTHER | 1 | 226 | 226 | 6.9E-134 | ||
| SUPERFAMILY | 37 | 225 | 189 | 3.25E-69 | ||
| Pfam | 39 | 224 | 186 | 1.2E-82 | ||
| Gene3D | 48 | 226 | 179 | 3.1E-67 | ||
| PRINTS | 85 | 100 | 16 | 5.6E-8 | ||
| PRINTS | 145 | 161 | 17 | 5.6E-8 | ||
| PRINTS | 162 | 177 | 16 | 5.6E-8 | ||
| PRINTS | 204 | 221 | 18 | 5.6E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho GDP-dissociation inhibitor activity | Prevents the dissociation of GDP from the small GTPase Rho, thereby preventing GTP from binding. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
Expression pattern of LotjaGi1g1v0006000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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