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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0008300 |
Transcript ID | LotjaGi1g1v0008300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | WRKY family transcription factor; TAIR: AT2G04880.2 zinc-dependent activator protein-1; Swiss-Prot: sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1; TrEMBL-Plants: tr|A0A0B2SJM8|A0A0B2SJM8_GLYSO WRKY transcription factor 1; Found in the gene: LotjaGi1g1v0008300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1089072..1096825) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGGTCTCCACACAACAAATGGATCTATGATAGGCTCTGATACCATATTAGAAATTGGGAGGCCTATAAAAATAAGGC CAATCAAGTGTTTATAAGAGTTGTGCAAACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCCCCTAATTTCT AATAGTGTTTAAACTTTTTTTGACGGGCAATAATTATTATTATTAATGTCAAAGGTTTTATTAATAATAGGGACTCTAAT AGCTTTTTCTTAAATGTACAAAATTGCAACATCTTAAGAGAATTTTAAGACCCCCTTGAAATTCTATTTGACGGGTTTTC AGACCTCCCATCACCCATCATGCTACATCCTTCTTCTACTTCTATCTAATTTATTTTAACTGGGTTTATTATTATTTAAT TCATATGACTTAAGGAATTTTATATTACATAGTTAATAATTTTTGCACATAATGTAATTAAAATGCAAATAGAGTAGGTT TCAAGTGGAATAAAGATAATTTTTTGAACTTGGATAAAAGAGACATTTAACTTACTAAAATAAAGTGTCTCGAACAAATG CGGTTATAGAATATGTGAATCACTTTTTTTTTTTTAAAGCACAACTTTATTTCATGAAAATAAAAGATAAGAGACCTATC CTCTCATATAGGTGAACAACAAAACATACACGACCCAAACCATTCCAAAATAAACCAAAAAAGGCAACCCTAGAAAATCT ATACCTACTCCTATCGAAGGAAGGTAAAAGAGTAAACCCACATTGCATCATTGATGTTTGAAAAACATTATTTGGAAGAG AAATGTTGCATCTGGATGACCATGTGAGAAAACTGTTGAGGGTCTTATTGGGAGGAAAACTAATTCATGTCATGCTTTTT CTTGATACTTTTAATTTTAAGTTCAACGTCCTTTGTTTTAATATTTTATGGGTAACTGCATAAATGCATTTCAAAGTTGG CGATGGAGCATTCTCTAGAGTCACGCATCGCAAATGATTAAAAAACCTCATTTGCGATAATGATGGTAACAATTCGCATA GTACACTTCAAATGTAGTTTATGAAGAAGTCTTTCGCAATGTCATATGAAGAAGACTTTTTTACAAGAAATGTGGAATGC TACGTTCTCAGTCTTATTCTCAATGTAATTATTCCAATTGTCAAAAAAAGAAAAATTAATCCAGTGTCTATTTTTAGCAC ATACATGTTACTTCACTCTCTATAATATGTTTCAAAAAAAAACTCTCTGGAATAAACGATGGATATAAAAAAACCATCAA TTGAACATTTAGGAAAACAACGACAAAAGATGAAAAAAAGATAAGCGACTCAAAAAAAACAAAAACAAACATTCAGTACT AGAAAAACTTACAAATTTATGATTTATTATCAAAAATAAATTTTATTCTTTTAATATGTAAAACATCTTTTAAAAAATAA CACATATTTTAAAAAAATCACACAAAACAAAAATAAATATCCCCGTGCATCGCACGGGTGAAAAGTACTAGTTATATATA TACCATTAGAATCTTAACATTCTTCATCACTTGAAAGGGTTCTATTTAATCATCAAAGCCCAAATTTTGAAGTCATTCTT TCACTTCATCAACTCCAGGCGTGCTGCAAAAAATTAGTATGGAAAATAATAAGTATCATCATAAATAAATAAATATCTTC TTCAGTTGGGAAGGGGAGAGGGGTAAAGGGAAAGATAAAATATTAATCATAGTTCCTTTTTTTTTATAAAGAATGAAAAA TTTGTATTACAATAAATAAACAAATTATGGTCAAGAAGCTTAAAAGAGTTGCAAAGAACCATCACATGAAGTTCCCTATC AATTTCAAGAGTTTGTGACCACTCCTAAGTCCTAATGGATACTTTAATGCTATCCACTTGAAATATAGGAATTGAGTTTC GCACATCAATTGATTTAAGTTTCCAATGATTTGTCAAATATTTATGCTTTCTTGATATTATTATCAACTGCAACTAAATA TGGCAGGAGCCTCTTAGCTTGGGAGCCCAATGTTCTTTTTGAAGAGTGCTTATCACCTTCAAATTCATTAGAATATTTGT TGTCCTTTGGGTAGAAGTGGAGAAACAGATATTATTATCTAAAAACATTTAATGACAATGTTAGTACAAAAAATAAAAAA TATTGTTGAAGGAACAAATGATGAAAATAAAAGTTAAACACATCAATTAATGTGTGATGTTCTACAAAGAGTAGCAAATA TAAAATCTTGAAGCAGTAACCCTCCACCCACATGATACAGGCCTACCACAATATTAGAGTTAGGAGGCCTAACTCAACCC AAAACTTAGCTCAAGAGTTGAGGTTTGCACTGCCATTTATAAGCACTTAATTGACCACATCTCTAGTCAATGTGGGACTC TAACACACCCCCTCACGCCAAGGGTTGGACATCTGGAGCGTGGAATAAAACGGGTGACCCAAATATGGGGAGTCAACAAA TGAATCTAGGATTAGGCTCTGATACCATATTAGAATTAGGGAGCCTAACTCAACCCAAAAGCTAGCTCAAGAGTTGAGGT TTGCACTACCATTTATAAGCACTTGATTGACCACATCGTTAGCCAATGTGAGACTCTAACACACATGATACAGGCCTACC ATCAATTAATGTGTGATGTTCTACAAAGAGTAGCAAATATAAAATCTTGGTGTTAGTAATTTTCCCTATGTGTATTGAGG TGACCCCTAATGTGCACCACTTTTAGAGGGGCAATTTTACACCACTTATTTTAACTTGTTATAACATGTCAACACATTTT TTTAAATAATTTAACATATAATAAAATTTTAATGATATATTTAAAAAAAAAAATTTGTTAACCTGCTGTAACCGGTCAAA AGCAAGTGGTGTAAAATTGCACCACTCAAAAAGTGGTGCATATTAGGGAGAATCGTGTATTTAAATGTACTTTATTTTTC TTTTTAGCCTTAATGAACTCTTGCTATCCAAAAAAAAAATTATGGAATAATTCATACACACATGATATAAAAGACTTTCA CCTTTAAATAATATGTAAGTTAGTTGATGTGTCTCGTTTGGCATGGGAGGTCTTATTCGAGACTCGTCGAGTGCTTGACT TGGGGATTCTATGCATGCTCTTTTGGAGGGGAGCATTTTCTTGCTGAGGTCCAGGCTTTGAAAATGGGTTTCCTGTTGGC GTGGGAAATGTAGTATCAACGTGTTGTGTTTGGGTTGGATTGCTTGGAATTGGTGAATGAGTTGTGACGAAATCTGTTTA ATTTTCATGTCTATGGTAGTGTATTGATGGATCTGCATCTTCTACTCTCTCGTGATTGGAAGGTTCGTTTACAGCATGTG GGTCGTGCAGATAATGCTTCTCTGAATTGTCTGGCTAGGATGAGTGCTGAGGCTCAGTGTGTCGTGCTGGAGCTAGCTTC TCCTCCGGATTTAGTTTTACCTTTCTTATTTAGATATCTGTTTGCTATGTAGTTCTGCTTTTTATTTTTCCCATTAAAGA AAAAGTGTAGTTGATTGATAGTGTAAAAAATATTACCATTCCATGTATGTACTTTATTCTCTTAAAATATAATTATTAGT ATCTTACTATTAGATAAACTCATTTAAAGAAATTTTGTTGTAAGAAAATATGATCAAACAAACTCAAATTTTGAAGGGAA TAACATAGGATGAGTGATAGCAAACTATTCTCAACAAAAAGTCTTAAAACAGTTGATAGATAATTCAGCTCCTTAAGCAT TTTGTTGAGAACTCGACCCCTAGAGAATGTGTAGGAGAATTATTTGTTGGGAAATATCTACCTATTTAATGTGATCTTAA CGTCTCGAGATGATTAACCTCATGTCTATCTACTATGAAAATACATCAATAATACTAAAAAAAAAGTTCAAAAGGAGTAG TTCTTTTATTTTGTTACTAAAATGAAGTTCAAATCAAATAGAACAGAAGTGTTTTTGTTGGACTTATAAGCCCAATCGTG AATAGAGCCCAGAAGAGTGAGGTTGGATTCCGGTTAATGGCTTGGCTGGTAAAGTTGGATTTTGCAGAGACGAAACAAGA ACCGTCCAAATGCAAAAGAAAAAGAAACACACACAAAAAAAAGGCATATTCTATTCTGTGTGTTTGTCACCACCCACTGT ACTCACTCACTCTAGAGAGAGAGAGAGAGAATGTGTGTGTGTGTGAAGAACTCAACTCTTGTTCATTTTATTCCCTTTTG TTATGTTTTGGTCAAATTAATTAATTAATATTATGTTGGTTGTACTGCTTTGGACTTTCTCTTCTTCTCATTGCTCACTT CCACAACAACACAACACAACACATTCACATGCTTGATTGAATCATCCATCTTCACTGTCTCACTGCTCCAATTTCAAGGT GATTTCCTCTTCCCTTCCCACTTGCTATCTTAATTCTTCTCTTTTTGTCTACCTCCCATTTTAAATAAACCTTCATATAT AAAAAAATATTTTCCCAGTTATTGTTGTAATTGAGGTATGTATGAGCTGAGGGTTTTGAATTTCCATGTTCTGTGTGAGT GAACAAGGAACATGTCTTGGAAAATCAGATTTTATCACTCCCCTATGTGAGACATAGGAAATGAAATCCCCCCTCCTTCT CTCTCCACTGAGTTTCATTTCACACACCAAATAAAGAATATAAATGATGCCAAAATGTTATCTTTGTGTTATTCAATTCA ACTATATTCTGTAAAGGTGATCAAGTTTCTAAAAAGGAATTATTTTCTTAACCCCACTGTTTATACTTTATACTATATCA TTGATGTCAATGATGCTTCTGATAACATTGTACCCAAATTTGTGTTTTGCTGATAAGCTTGTTTCAGGTTTGAAGGAGCA CAGGACAACCACATAGTGTTTGTTGGTGCTCAACTCAATTACTTCAATATATTCATGGAAGAAGTCAATGAATCTTGACC TGTTTCCTTTTGATATATAAAATAGTGTGAGTTGGTTCTCATGGTTTCTTCAGATGGAAGTGTTGATCACAAGGCTTCTT CTGATGAAGCACAGCAGAGAGCGAGTCCTCATGGCGATGTCACATTGTCAGAACAAGGGATTTGTGATACTGAAATTCAT TTGTCCAAGCCAGAGGGAGCAAGAAGTACTCTTTCTATTGTGGCTGAAAATGCAGGGAAGGATTCTGATTCCACTGCTTG TGCCTTGCAATCAGGTCAAGAAGGAAGCCCTTCACCACTTGAGAAACATTTGCATAGCCCTGATACTTCTTTGCATGAAT CGCAATCTGGTCAGCACAGTCCTGCTATAGTGCGTGAAAAGGTAACAAAAGATGGCTATAACTGGCGAAAATATGGCCAG AAACATGTTAAGGGGAATGAGTTTATAAGGAGCTATTACAAGTGTACACATCCCAGCTGCCAGGCTAAAAAGCAGTTGCA GCAGTTAAACAATGGGCAGATTACAGATTCTATTTGCATCGGTCAGCACAATCATCCTAGGCCGCAATTGGACACCGCAC AACCAGTTCATTCTGTTCTGCCTGTTGCTGAACAAGGACCACAAAAGCCTTCTTTAACCAATGTGGAAGGTGAGAAGTAA ACTTCTTTAGTATTTTAGTTTCTATGTGTTGAGATATTGCTAGATACTGTTGAGATATTGTTGAAATACTGTTAAGATGT TGTGTATTTCTTTTGATATTATTAGTGATGTGAATGTATATAATTTATATCATAGATTATTTACTTATTTAGATTGATTG TTATCCCTAAACTTGTGGTACTTTTGTATATATATTGTATTATCATGGAATAAAATAACCAGAATAGTTTATTCAAGTCT ATGCTTCCATGAAAAATCTCCTGATATATTTCATGTCATCTTACATGAAGACAAATCATCAGTTGAGCATGGATGTCAGC CTCTAGAGGTCAAGCCTTTACACTCCCTTCCAGCTTCAAAAGTTTCCCCAGCTGATGATTTGAAAGCTACACATTTACAA TTGAAAGTAAAGGATGAGGCTCATAGCAATGAGGATTCTGCGTCAAAGAGGCTGTATGTTATTTGGCTATTTTATAAAAA AAATTGGAATTGATGTATATGCAATAGCTAACTTTTAGTTTACTGCCAAATTGATACCAAACAGAAAGAAAGAGAACGGC AATGCTGCCGCCGCTGGAGTTGACCTACCAACTCGTGGACCTCGTGTTGTTCATACTTCCAGTGAGGTTGATTTTGTAGA TGATGGGTATCGTTGGCGCAAATATGGGCAGAAACTAGTTAGAGGGAATACAAATCCAAGGTACATTTTAGCTTTTAATT TCAAGATTCAGTTGTATTTTCAAATTCAATTCTATCTATGTCTAGGTTGTTTTAGAAATTAGAATGTGTTTATACTTTAT ATCATCCCATATATAAAGTATAAATTGATTGCATTAGCTTCTTGTCTAAAGTTCTGTTGAATTATTCTTCCCCTTCTTGT AAGCGACGGGAAAGGGTTTTAATGACTTTTTATATTATTTTCAAACTGTGTTCAACATGTGCATTTTTTCTTATTTAATT CGTGGCTGGTTCTGCACTCGGTACAACTTTCTACCACAATTTTTTTATGGCTTTAACCATGATTTAGCAGTCCTAACCAG GTTGTGAAAAGCCAGCTAACCTCTCAAAGTTTGCACATGTATGAACAATTTAATCAGAAGTCTCTTGTGTTTCTTTGATA TAGAAAGAAATGGCAATAGTATCAATAATGATTTTGTTCTGAATTGGTACATAACATTGTGTTGCTTTAGTTCTCAATAA TGCAGTTCAACCTGTTGGTCACAACTGTTAGATGTTTATTTGCTCATCCATTCACGAATGATTCAATTTTAATGACTGCA TTTTCTCTCCACTCTTACAGAAGTTATTATCGATGCTCGAATCCTGGATGCTTTGCCAAAAAGCATGTGGAAAGGGCCTC TCATGATTCAAAAATTGTAATAACTACCTATGAAGGACATCATTGTCATGAAATCCCCTCTGCAAGGAGTGTTACTACTC ATAATTCAGCTATAGATACTCACGCAATGGCCACCAATGGCAAGTCAGGAACCAAATATGAGGGTAGTATTGTTCGTGTT GATTCAGGCTCTAAAAGCAGATTAGATGAGCAACAAAATGAGGAGCCAATTACGTCAAAATCAAAGGTTGGTGATACGGT TGAGTTTTGTGCAGTCAGCCTGAGTAATGAGGGTCATGAAACTAAATTAAAAGAGCAAGAACAACAAAATGATGACTCAG GTGCCAAAGATGATTCTGTCAGCAGTGACATCATTTGTCATTCAAGTTCTGAAGGTCCTTGTAGAACAAATGAACAACTG AAAGATGAGGTAAAAACTACATCAGAAGGAAGTAAGGATTGTCTCAATGTGGTTGCTGTTGATGTTCATAATCAGCAACC AAAATCTGACCCAGAACCTGTTCAAAGCTAAATTGCAATGTTTTATGTATCTATCTATATATAATATATTAATTCAGAAG CGTACATTCTACCATTGGGACATCAGATATTAAATTAGTTTTGTAAAGAAAGAATTGCTCTTATTAATGTGTGTAGAATT ATTTAAGAGAGTTGCACTAAATATGATTATTTGGGAGGAATTAAAGGCTAGAATTAAACTAAACTAACTGAAAAGGAAAA ATCTGATACAATGAGAACTGAACGAAACACTCTATTGTACATTGACAAATTTTCTTCTAGGTTTATTCTCTCAT
CDS sequence (LotjaGi1g1v0008300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCTTCAGATGGAAGTGTTGATCACAAGGCTTCTTCTGATGAAGCACAGCAGAGAGCGAGTCCTCATGGCGATGT CACATTGTCAGAACAAGGGATTTGTGATACTGAAATTCATTTGTCCAAGCCAGAGGGAGCAAGAAGTACTCTTTCTATTG TGGCTGAAAATGCAGGGAAGGATTCTGATTCCACTGCTTGTGCCTTGCAATCAGGTCAAGAAGGAAGCCCTTCACCACTT GAGAAACATTTGCATAGCCCTGATACTTCTTTGCATGAATCGCAATCTGGTCAGCACAGTCCTGCTATAGTGCGTGAAAA GGTAACAAAAGATGGCTATAACTGGCGAAAATATGGCCAGAAACATGTTAAGGGGAATGAGTTTATAAGGAGCTATTACA AGTGTACACATCCCAGCTGCCAGGCTAAAAAGCAGTTGCAGCAGTTAAACAATGGGCAGATTACAGATTCTATTTGCATC GGTCAGCACAATCATCCTAGGCCGCAATTGGACACCGCACAACCAGTTCATTCTGTTCTGCCTGTTGCTGAACAAGGACC ACAAAAGCCTTCTTTAACCAATGTGGAAGACAAATCATCAGTTGAGCATGGATGTCAGCCTCTAGAGGTCAAGCCTTTAC ACTCCCTTCCAGCTTCAAAAGTTTCCCCAGCTGATGATTTGAAAGCTACACATTTACAATTGAAAGTAAAGGATGAGGCT CATAGCAATGAGGATTCTGCGTCAAAGAGGCTAAAGAAAGAGAACGGCAATGCTGCCGCCGCTGGAGTTGACCTACCAAC TCGTGGACCTCGTGTTGTTCATACTTCCAGTGAGGTTGATTTTGTAGATGATGGGTATCGTTGGCGCAAATATGGGCAGA AACTAGTTAGAGGGAATACAAATCCAAGAAGTTATTATCGATGCTCGAATCCTGGATGCTTTGCCAAAAAGCATGTGGAA AGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAAGGACATCATTGTCATGAAATCCCCTCTGCAAGGAGTGT TACTACTCATAATTCAGCTATAGATACTCACGCAATGGCCACCAATGGCAAGTCAGGAACCAAATATGAGGGTAGTATTG TTCGTGTTGATTCAGGCTCTAAAAGCAGATTAGATGAGCAACAAAATGAGGAGCCAATTACGTCAAAATCAAAGGTTGGT GATACGGTTGAGTTTTGTGCAGTCAGCCTGAGTAATGAGGGTCATGAAACTAAATTAAAAGAGCAAGAACAACAAAATGA TGACTCAGGTGCCAAAGATGATTCTGTCAGCAGTGACATCATTTGTCATTCAAGTTCTGAAGGTCCTTGTAGAACAAATG AACAACTGAAAGATGAGGTAAAAACTACATCAGAAGGAAGTAAGGATTGTCTCAATGTGGTTGCTGTTGATGTTCATAAT CAGCAACCAAAATCTGACCCAGAACCTGTTCAAAGCTAA
Protein sequence (LotjaGi1g1v0008300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSSDGSVDHKASSDEAQQRASPHGDVTLSEQGICDTEIHLSKPEGARSTLSIVAENAGKDSDSTACALQSGQEGSPSPL EKHLHSPDTSLHESQSGQHSPAIVREKVTKDGYNWRKYGQKHVKGNEFIRSYYKCTHPSCQAKKQLQQLNNGQITDSICI GQHNHPRPQLDTAQPVHSVLPVAEQGPQKPSLTNVEDKSSVEHGCQPLEVKPLHSLPASKVSPADDLKATHLQLKVKDEA HSNEDSASKRLKKENGNAAAAGVDLPTRGPRVVHTSSEVDFVDDGYRWRKYGQKLVRGNTNPRSYYRCSNPGCFAKKHVE RASHDSKIVITTYEGHHCHEIPSARSVTTHNSAIDTHAMATNGKSGTKYEGSIVRVDSGSKSRLDEQQNEEPITSKSKVG DTVEFCAVSLSNEGHETKLKEQEQQNDDSGAKDDSVSSDIICHSSSEGPCRTNEQLKDEVKTTSEGSKDCLNVVAVDVHN QQPKSDPEPVQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 104 | 104 | - | – | |
PANTHER | 2 | 492 | 491 | 1.8E-140 | – | |
PANTHER | 2 | 492 | 491 | 1.8E-140 | – | |
MobiDBLite | 55 | 77 | 23 | - | – | |
Gene3D | 94 | 169 | 76 | 3.1E-24 | ||
ProSiteProfiles | 104 | 168 | 65 | 19.084 | ||
SUPERFAMILY | 105 | 168 | 64 | 3.66E-22 | ||
SMART | 109 | 167 | 59 | 1.0E-27 | ||
Pfam | 110 | 166 | 57 | 1.9E-21 | ||
MobiDBLite | 182 | 201 | 20 | - | – | |
MobiDBLite | 234 | 252 | 19 | - | – | |
MobiDBLite | 234 | 271 | 38 | - | – | |
Gene3D | 267 | 343 | 77 | 1.7E-31 | ||
SUPERFAMILY | 274 | 342 | 69 | 2.22E-27 | ||
ProSiteProfiles | 277 | 342 | 66 | 33.247 | ||
SMART | 282 | 341 | 60 | 2.9E-35 | ||
Pfam | 283 | 339 | 57 | 1.9E-23 | ||
MobiDBLite | 377 | 398 | 22 | - | – | |
Coils | 412 | 432 | 21 | - | – | |
MobiDBLite | 414 | 434 | 21 | - | – | |
MobiDBLite | 414 | 468 | 55 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0008300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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