Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0008300 |
| Transcript ID | LotjaGi1g1v0008300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT2G04880.2 zinc-dependent activator protein-1; Swiss-Prot: sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1; TrEMBL-Plants: tr|A0A0B2SJM8|A0A0B2SJM8_GLYSO WRKY transcription factor 1; Found in the gene: LotjaGi1g1v0008300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1093328..1096691) extracted from Lotus japonicus Gifu genome v1.2.
TTAATTAATTAATATTATGTTGGTTGTACTGCTTTGGACTTTCTCTTCTTCTCATTGCTCACTTCCACAACAACACAACA CAACACATTCACATGCTTGATTGAATCATCCATCTTCACTGTCTCACTGCTCCAATTTCAAGGTGATTTCCTCTTCCCTT CCCACTTGCTATCTTAATTCTTCTCTTTTTGTCTACCTCCCATTTTAAATAAACCTTCATATATAAAAAAATATTTTCCC AGTTATTGTTGTAATTGAGGTATGTATGAGCTGAGGGTTTTGAATTTCCATGTTCTGTGTGAGTGAACAAGGAACATGTC TTGGAAAATCAGATTTTATCACTCCCCTATGTGAGACATAGGAAATGAAATCCCCCCTCCTTCTCTCTCCACTGAGTTTC ATTTCACACACCAAATAAAGAATATAAATGATGCCAAAATGTTATCTTTGTGTTATTCAATTCAACTATATTCTGTAAAG GTGATCAAGTTTCTAAAAAGGAATTATTTTCTTAACCCCACTGTTTATACTTTATACTATATCATTGATGTCAATGATGC TTCTGATAACATTGTACCCAAATTTGTGTTTTGCTGATAAGCTTGTTTCAGGTTTGAAGGAGCACAGGACAACCACATAG TGTTTGTTGGTGCTCAACTCAATTACTTCAATATATTCATGGAAGAAGTCAATGAATCTTGACCTGTTTCCTTTTGATAT ATAAAATAGTGTGAGTTGGTTCTCATGGTTTCTTCAGATGGAAGTGTTGATCACAAGGCTTCTTCTGATGAAGCACAGCA GAGAGCGAGTCCTCATGGCGATGTCACATTGTCAGAACAAGGGATTTGTGATACTGAAATTCATTTGTCCAAGCCAGAGG GAGCAAGAAGTACTCTTTCTATTGTGGCTGAAAATGCAGGGAAGGATTCTGATTCCACTGCTTGTGCCTTGCAATCAGGT CAAGAAGGAAGCCCTTCACCACTTGAGAAACATTTGCATAGCCCTGATACTTCTTTGCATGAATCGCAATCTGGTCAGCA CAGTCCTGCTATAGTGCGTGAAAAGGTAACAAAAGATGGCTATAACTGGCGAAAATATGGCCAGAAACATGTTAAGGGGA ATGAGTTTATAAGGAGCTATTACAAGTGTACACATCCCAGCTGCCAGGCTAAAAAGCAGTTGCAGCAGTTAAACAATGGG CAGATTACAGATTCTATTTGCATCGGTCAGCACAATCATCCTAGGCCGCAATTGGACACCGCACAACCAGTTCATTCTGT TCTGCCTGTTGCTGAACAAGGACCACAAAAGCCTTCTTTAACCAATGTGGAAGGTGAGAAGTAAACTTCTTTAGTATTTT AGTTTCTATGTGTTGAGATATTGCTAGATACTGTTGAGATATTGTTGAAATACTGTTAAGATGTTGTGTATTTCTTTTGA TATTATTAGTGATGTGAATGTATATAATTTATATCATAGATTATTTACTTATTTAGATTGATTGTTATCCCTAAACTTGT GGTACTTTTGTATATATATTGTATTATCATGGAATAAAATAACCAGAATAGTTTATTCAAGTCTATGCTTCCATGAAAAA TCTCCTGATATATTTCATGTCATCTTACATGAAGACAAATCATCAGTTGAGCATGGATGTCAGCCTCTAGAGGTCAAGCC TTTACACTCCCTTCCAGCTTCAAAAGTTTCCCCAGCTGATGATTTGAAAGCTACACATTTACAATTGAAAGTAAAGGATG AGGCTCATAGCAATGAGGATTCTGCGTCAAAGAGGCTGTATGTTATTTGGCTATTTTATAAAAAAAATTGGAATTGATGT ATATGCAATAGCTAACTTTTAGTTTACTGCCAAATTGATACCAAACAGAAAGAAAGAGAACGGCAATGCTGCCGCCGCTG GAGTTGACCTACCAACTCGTGGACCTCGTGTTGTTCATACTTCCAGTGAGGTTGATTTTGTAGATGATGGGTATCGTTGG CGCAAATATGGGCAGAAACTAGTTAGAGGGAATACAAATCCAAGGTACATTTTAGCTTTTAATTTCAAGATTCAGTTGTA TTTTCAAATTCAATTCTATCTATGTCTAGGTTGTTTTAGAAATTAGAATGTGTTTATACTTTATATCATCCCATATATAA AGTATAAATTGATTGCATTAGCTTCTTGTCTAAAGTTCTGTTGAATTATTCTTCCCCTTCTTGTAAGCGACGGGAAAGGG TTTTAATGACTTTTTATATTATTTTCAAACTGTGTTCAACATGTGCATTTTTTCTTATTTAATTCGTGGCTGGTTCTGCA CTCGGTACAACTTTCTACCACAATTTTTTTATGGCTTTAACCATGATTTAGCAGTCCTAACCAGGTTGTGAAAAGCCAGC TAACCTCTCAAAGTTTGCACATGTATGAACAATTTAATCAGAAGTCTCTTGTGTTTCTTTGATATAGAAAGAAATGGCAA TAGTATCAATAATGATTTTGTTCTGAATTGGTACATAACATTGTGTTGCTTTAGTTCTCAATAATGCAGTTCAACCTGTT GGTCACAACTGTTAGATGTTTATTTGCTCATCCATTCACGAATGATTCAATTTTAATGACTGCATTTTCTCTCCACTCTT ACAGAAGTTATTATCGATGCTCGAATCCTGGATGCTTTGCCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAATT GTAATAACTACCTATGAAGGACATCATTGTCATGAAATCCCCTCTGCAAGGAGTGTTACTACTCATAATTCAGCTATAGA TACTCACGCAATGGCCACCAATGGCAAGTCAGGAACCAAATATGAGGGTAGTATTGTTCGTGTTGATTCAGGCTCTAAAA GCAGATTAGATGAGCAACAAAATGAGGAGCCAATTACGTCAAAATCAAAGGTTGGTGATACGGTTGAGTTTTGTGCAGTC AGCCTGAGTAATGAGGGTCATGAAACTAAATTAAAAGAGCAAGAACAACAAAATGATGACTCAGGTGCCAAAGATGATTC TGTCAGCAGTGACATCATTTGTCATTCAAGTTCTGAAGGTCCTTGTAGAACAAATGAACAACTGAAAGATGAGGTAAAAA CTACATCAGAAGGAAGTAAGGATTGTCTCAATGTGGTTGCTGTTGATGTTCATAATCAGCAACCAAAATCTGACCCAGAA CCTGTTCAAAGCTAAATTGCAATGTTTTATGTATCTATCTATATATAATATATTAATTCAGAAGCGTACATTCTACCATT GGGACATCAGATATTAAATTAGTTTTGTAAAGAAAGAATTGCTCTTATTAATGTGTGTAGAATTATTTAAGAGAGTTGCA CTAA
CDS sequence (LotjaGi1g1v0008300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCTTCAGATGGAAGTGTTGATCACAAGGCTTCTTCTGATGAAGCACAGCAGAGAGCGAGTCCTCATGGCGATGT CACATTGTCAGAACAAGGGATTTGTGATACTGAAATTCATTTGTCCAAGCCAGAGGGAGCAAGAAGTACTCTTTCTATTG TGGCTGAAAATGCAGGGAAGGATTCTGATTCCACTGCTTGTGCCTTGCAATCAGGTCAAGAAGGAAGCCCTTCACCACTT GAGAAACATTTGCATAGCCCTGATACTTCTTTGCATGAATCGCAATCTGGTCAGCACAGTCCTGCTATAGTGCGTGAAAA GGTAACAAAAGATGGCTATAACTGGCGAAAATATGGCCAGAAACATGTTAAGGGGAATGAGTTTATAAGGAGCTATTACA AGTGTACACATCCCAGCTGCCAGGCTAAAAAGCAGTTGCAGCAGTTAAACAATGGGCAGATTACAGATTCTATTTGCATC GGTCAGCACAATCATCCTAGGCCGCAATTGGACACCGCACAACCAGTTCATTCTGTTCTGCCTGTTGCTGAACAAGGACC ACAAAAGCCTTCTTTAACCAATGTGGAAGACAAATCATCAGTTGAGCATGGATGTCAGCCTCTAGAGGTCAAGCCTTTAC ACTCCCTTCCAGCTTCAAAAGTTTCCCCAGCTGATGATTTGAAAGCTACACATTTACAATTGAAAGTAAAGGATGAGGCT CATAGCAATGAGGATTCTGCGTCAAAGAGGCTAAAGAAAGAGAACGGCAATGCTGCCGCCGCTGGAGTTGACCTACCAAC TCGTGGACCTCGTGTTGTTCATACTTCCAGTGAGGTTGATTTTGTAGATGATGGGTATCGTTGGCGCAAATATGGGCAGA AACTAGTTAGAGGGAATACAAATCCAAGAAGTTATTATCGATGCTCGAATCCTGGATGCTTTGCCAAAAAGCATGTGGAA AGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAAGGACATCATTGTCATGAAATCCCCTCTGCAAGGAGTGT TACTACTCATAATTCAGCTATAGATACTCACGCAATGGCCACCAATGGCAAGTCAGGAACCAAATATGAGGGTAGTATTG TTCGTGTTGATTCAGGCTCTAAAAGCAGATTAGATGAGCAACAAAATGAGGAGCCAATTACGTCAAAATCAAAGGTTGGT GATACGGTTGAGTTTTGTGCAGTCAGCCTGAGTAATGAGGGTCATGAAACTAAATTAAAAGAGCAAGAACAACAAAATGA TGACTCAGGTGCCAAAGATGATTCTGTCAGCAGTGACATCATTTGTCATTCAAGTTCTGAAGGTCCTTGTAGAACAAATG AACAACTGAAAGATGAGGTAAAAACTACATCAGAAGGAAGTAAGGATTGTCTCAATGTGGTTGCTGTTGATGTTCATAAT CAGCAACCAAAATCTGACCCAGAACCTGTTCAAAGCTAA
Protein sequence (LotjaGi1g1v0008300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSSDGSVDHKASSDEAQQRASPHGDVTLSEQGICDTEIHLSKPEGARSTLSIVAENAGKDSDSTACALQSGQEGSPSPL EKHLHSPDTSLHESQSGQHSPAIVREKVTKDGYNWRKYGQKHVKGNEFIRSYYKCTHPSCQAKKQLQQLNNGQITDSICI GQHNHPRPQLDTAQPVHSVLPVAEQGPQKPSLTNVEDKSSVEHGCQPLEVKPLHSLPASKVSPADDLKATHLQLKVKDEA HSNEDSASKRLKKENGNAAAAGVDLPTRGPRVVHTSSEVDFVDDGYRWRKYGQKLVRGNTNPRSYYRCSNPGCFAKKHVE RASHDSKIVITTYEGHHCHEIPSARSVTTHNSAIDTHAMATNGKSGTKYEGSIVRVDSGSKSRLDEQQNEEPITSKSKVG DTVEFCAVSLSNEGHETKLKEQEQQNDDSGAKDDSVSSDIICHSSSEGPCRTNEQLKDEVKTTSEGSKDCLNVVAVDVHN QQPKSDPEPVQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 104 | 104 | - | – | |
| PANTHER | 2 | 492 | 491 | 1.8E-140 | – | |
| PANTHER | 2 | 492 | 491 | 1.8E-140 | – | |
| MobiDBLite | 55 | 77 | 23 | - | – | |
| Gene3D | 94 | 169 | 76 | 3.1E-24 | ||
| ProSiteProfiles | 104 | 168 | 65 | 19.084 | ||
| SUPERFAMILY | 105 | 168 | 64 | 3.66E-22 | ||
| SMART | 109 | 167 | 59 | 1.0E-27 | ||
| Pfam | 110 | 166 | 57 | 1.9E-21 | ||
| MobiDBLite | 182 | 201 | 20 | - | – | |
| MobiDBLite | 234 | 252 | 19 | - | – | |
| MobiDBLite | 234 | 271 | 38 | - | – | |
| Gene3D | 267 | 343 | 77 | 1.7E-31 | ||
| SUPERFAMILY | 274 | 342 | 69 | 2.22E-27 | ||
| ProSiteProfiles | 277 | 342 | 66 | 33.247 | ||
| SMART | 282 | 341 | 60 | 2.9E-35 | ||
| Pfam | 283 | 339 | 57 | 1.9E-23 | ||
| MobiDBLite | 377 | 398 | 22 | - | – | |
| Coils | 412 | 432 | 21 | - | – | |
| MobiDBLite | 414 | 434 | 21 | - | – | |
| MobiDBLite | 414 | 468 | 55 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0008300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…