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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0013300 |
| Transcript ID | LotjaGi1g1v0013300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulatory protein recX; TAIR: AT3G13226.1 regulatory protein RecX family protein; Swiss-Prot: sp|P37861|RECX_PSEFL Regulatory protein RecX; TrEMBL-Plants: tr|A0A0B2QW25|A0A0B2QW25_GLYSO Regulatory protein recX; Found in the gene: LotjaGi1g1v0013300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1698966..1704284) extracted from Lotus japonicus Gifu genome v1.2.
CTTACACATAACCTTTTGGTTCTTGATGTCATTTTGCGACGGAAAAAGCGTACACACTTGGTGACGGATTCAATTTCAGA TGAATATACTCTTTATATCCTCGATATTTAACCCTATAATCTTTTTTATTTTTGATCATCACAAATAGTGGGAAGCTCTT GGTAACTAGCCACAAATTTTGGCTACATGACGATGATGGCAACTTTCGCGGCAAATATTGGCTTCAAAATCTCTCATCAG TTTCCGTCTCGCGTTTTTTCAACTGCCCGGTGAGTAATTCTCAGTTGGGGTATCAAAATGACACCAAAGTTTGATTTTTT CATTCTAATTATGTAATGGAGTTCTAATTTAGCTACCCAATTGGTTGTGTTGCATTGACTTGATGTCAATTCTCATAAAA GACTCAGCTTTTAATAGGGATAGATAGATTTTGAAATTTTTTGGCTTTGATTCTTACCCTTCTTCTTTTTTTGTTAAAAA TAGGATCTTTTGGAGGTTTCAGATTGCTTGCTTGAAGAGCAGAGAGTTTAGTTCTTCTGTTCCTGCTAGGTACATTCCTA AATCACCTGAAACTGCTCTGCCAGTGAAAAGCCTAGAAAGTTCTAGCTTCCCTGATGTTAGTGTGCCCAAGATAAATGGT GGAAGTGAGGCTAATTCAACTATTGCACATTATGGAACTTCTCGCAATCCGGATGAAGTTCACACTGACTTGCTCTTTGA TGACAATCAAGAAGGTAAACTGCTTTCTAACAACTTCTAGTGTGACATATAGTAGTTCATTATTTCGGGGTTAGTTTTGC TTTACTATACACTATTGCCTATTCGTGGCTCGCTAATCGCCAAAGATTTGTGATTTTAAGCATTTCAATTATATTTGATG CCGGGCATGTGATTGAAGATACATTATTTTTTTATAGTGACATTGGATAAATACACAAGTCCTGATATTCTTTAGATAGA CCTGATATTTTAAATACATAAGAGATTATTCACTTCGGGGTTTGGAGGTCTCATTGTGATTGATAAGTCGAATAAAATTG AACTTAATTTGATAATTAGCAACATAAACACGGAAGAAAAGTCAAGCGTGGTTGTCTTGTGGTTAACTAAGTTAATTTTC TCCAGCTCTCATATGATCTCCTCAACTGTTAAGATCGAGGATTGATGATAGGTTCATGCTTCTAGATTCACCGTGTTCAT TTTTTCTGAGATACAAATTAACACATGTTGTCTTGTTAGAACCTGTTTTAGCTCTCAACTTGGGCTTCTTTTTACCAATC TGTTTTAATGGAATAACCGGATGTAGAATCAACCAGGATGATTAGAAATGATATTGCACATAAAACGTGTATAATATAGG AAGTGAAGTTGTTCTAAACATCTTAATTTGTGGATTGTAGGTTCTGAGCAGATGGAAGAGGTTGGAGAGTTGACAATCCA CCTGGCAGGAGACGCGTGTGAAAAGGATTTAATACAAACTGACAAATTTACCAATGATGTTGAGCAATCAGCTATTAAGC TACTTGCAGTTAGGTTAATGCCCCCTGCCCTGAAAACAGAAGTTATTTAATGCTAGACTTGTTATGTTATGTTAAGTATG GTCAACAAAATCACGAGCATGATGTTTCCTTGTTCAGTGCAAGAGAAATCATTTTTATCATGCTACTATGAGTTTACTGT AAATATGCCATTTTGCTTCTCTCTTTGCATGGTTTGTTCATAACACCAACAGTAAATTGCCACTATGCTTACTGCTTCCT GTTGAGAGAACTGCCTTTTGATTTTGACTCAGTATATCAAGTATTTGCCTTCTCTCAACACTGCCATTAAGATTTTTGAA GAAAACTGATGATATGCTATGAGCCTATAACTGAAAGCTAAAAAATTATTTTAAAGCATAGGCATTTTATTTCGCATTTT TTTAAACTATCTGTTTAAAAATATCCCATATTTATCTTCAACCTTAAATTTCATCTTGATTGGAGTAGTTTGCATATCAT TATATCAATGAATAGGGTAATTCTGAATGAAGCATAGCTTACTTGGCATGCCTTTTGAAAAATTTAGCAAATTGTTAGAA ACAATTAATTTCCTGAATTTGTGTTTCTTAGAAGTTAAGGGAATAAGTTCTGTGATAACTGATAATTCAAGTCAACTTAT ATCTTTTGCCAGTTGGGAGTGTGTGCAATCTGCATTTACATTTAATGTGAAATGCGGTCTTTTATTAAGCTTGCCTGTCT CTCTGCTCTGCAGGGCACTCACAGCAGTCGAGTTAAGAAAAAAATTGCTTGGAAAGAGATTTTCTCCTAATGCAGTGGAG GCAGTGATAAGCAAGTTGCAGAGAAAGTATGTTGTTAACTTCATGTAAAATCTGTTCAGCTGTTATTTACCAGCTACTTT TATATGAACTTTACCTGAATCTCTACATGCTTCCAGACAACTACTTCCTCAACTTGGTTCCCATAATGTTTTATTTATGG ACAACAAAATGAGAGTAATATGTGTTATTTGATTCCTGGCCTTGAAAATGAGATGCCTGCAATTAGAGATGCAGTTGGTT ATCATGACAATGATTTGGAATGCAGCTCTAGCCAACTGTTAATTCAGTCATTGTGTCTAACTGGATGTAGAGTAGTAGTC AAAAAATGATTGTTTTGGACATTTTAGAGTAACCCACTTTATGCAGTTGGGAGTAATGAGTATGTTTATTTACAATTTTA ACTTCGAAGTCGTTGTTACATGGAGCTCTTTTTTTTTAATGATAGGTAACAATTGCCACCACTTTTTAAGTTCTTAGTGT TCAGAAAATTTATATTAAATTTGAACACATAATTAATTTATGTATGCAAATAAAATTCCCTTCTTATTTAAAATAACCTG TCATATCTCATATAAGAATTATTCATTTTGCAAAAGTTATCATAAACTTTCTCTTCTGTTTGACAAATAATTACCTTGTC TTGTGTAGTACTTTTCATAATGCACCTTTTCAAGTTCATTTATAAAACATGAATTCGCAAACATTTTTATACATGTTGTG GATTTGTGGTGATCCTTTAATCCCTTTATTTGTACCAGAGGGTTTATCAATGATAGGTTGTATGCTGAATCATTTTCTCA ATCTAGATGGTCTTCATCAAGTTGGGGGCCAAGGAGGATCAAACAAGTAAGCTAGTCCATATTGTACTTTTGTTCAGCCT GTTACTTTTTTGCTTTCTTATACATTGCCTCACTGCTATTCCATTCTGTCTTTTTCCTTGCTATGTCATTAGTCTCGTTG CCAAGCAAAAGAGGAAATGATTCTGTCAGTATTATGCTTCTGTTGTGCTTTCTAAGTTTAATTACATCTTTTCCTGCTTG ACTTGTGTTATAGTTTATTTTACTTGGTGAGTTGCTTGCCAAATGCAAAGTTCCCACCCAATAATTTTAAACTAAACTTA TAATTTATCTGATTGAATGCTTTTAAAAAATATTAAATATAATAATAATAATCATACGTGTGTTTCATTTTAAATTTGAG TTTATAGATTGCACGGTGGGTTTAAAACAGCAACCTTTAATTCTTTAATTTAATTATGATACTTAATTTTTTTTTTTGAA ACGATACTTTAAATCATAACTACACAATATAACATTAAAAACGGAAAAATCACATGAGAATATGATAGTATGACTTGGTC TTTTGATTGTTTCTCACTACTTCAGCAAAATAGGAAGAGAATCCGGAGTCAAAATAAGAGTACCAGAAAAATAGGATATT TGCTATAACAGAATGGAACAATTTGCACTATAAGAATGAATGTTATCTCACTCTTGAAGCAATTCACCGTTCGCAATTCT CACCTTCACCATTCACGATTCTTTTTCTTCTTCTTCTCCTTCTCAGAATCTCCATTTGCGATTTGAGATCCTCCATTGAC GCTCAATCTGCAGCTCTCGTCTTAAAGTATGTACGTGTGTCTTCTTTTTGTTCTCACAAGTTTATGGAATGCTCTCCATT TTGTGATTTCTGATTTATTTCTAATTTTGCATTTTGTTTCTCTTTGGAATCACAGATTAAGATTAAGCAGAGATTCTCAG GAGTGGGAACCTTAACATTGTTAGCAAATATCCTATTTTTCTGGTACTCTTATTTTGACTCCGGATTCTCTTCCTATTTT GCTGAAGTAGTGAGAAACAATCAAAAGACCAAGTCATACTATCATATTCTCATGTGATTTTTCCGTTTTTAATGTTATAT TGTGCAGTTATGATTTAAAGTATCATTTCAAAAAAATAATTAAGTATCATAATTAAATTAAAGAATTAAAGGTTGCTGTT TTAAACCCACCGTGCAATCTATAAACTCAAATTTAAAATGAAATATATGTATGATTATTATTATTATATTTAATATTTTT TAAAATTATTATATTTAAATATAATAAACCGGGCTGCCGTTTTTTTAATGGACTGCAATTGTGTTGCCAGGCACTGTTCA AGAAGGGAGTTAGTCGAGCTGATGCTGAAAAGGCACTTGAAGTGGTTTTTGAGGACAATGATTGTGCTGAAGATCATCAG TCAATTATTGGAATGTCAAAGCAGTCCATGGATCATCTTTATGCTCAGGCCTCAAAGCAGTGGCTCAGATGTCAGAATGT ACCCAAGGAGACAAGAAAATCAAGGATTGTGAGGTGGCTTCAATACCGCGGATTTGACTGGAATGTCACTAGCTTCATCT TGAAGAAATTAGAGAGGCAGGAGCAGAATCCTCCATAGTGCACACAATAGGGACATCCAAAGTTCATACCAATCTGGAAA TCCAATGGCGGGGTCCGTACAAGTTTCTTGTATTGTTTAGTGTGTAAAAGGGTAGGGTTGAAGCCTCCATTGACTCATAA TGGTGTTGCAAACAAACTAGCATTTGATTGCTTCAATGTGCTCTAGGCCATATGGAATCGGAGCACACAAGACTATTCTT GTCTGAGTACATTGAAGCTACTTTTTTTTACACTCAGGCTGAGATAAGGAACAAGCACCACTGAGGACTGAGGAGGTTCT ACTTGTGATCCACTTGTCTGGCCAGTCTTGGAGATAAGCAACTCTTTGGTACTCTTGTATTACTGAAGTTTCGTGCTCAA AGAAGTTACAATGCTATTTATTGGTTAATTTATTTGATCTGAATCATGTTTATGAGAAATTGTATTGAACCTCATCAGCT TCAAGTTCTTGCAAATATTATTTCCAACTTTTTCATTTTGGCAATATGCCCCTTCAACTAAAAAAATGTTATAATAGTTG ATTTTTTTTGTTAATAAAAACCGGTCCGAGGCTTCATAA
CDS sequence (LotjaGi1g1v0013300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGATGATGGCAACTTTCGCGGCAAATATTGGCTTCAAAATCTCTCATCAGTTTCCGTCTCGCGTTTTTTCAACTGC CCGGATCTTTTGGAGGTTTCAGATTGCTTGCTTGAAGAGCAGAGAGTTTAGTTCTTCTGTTCCTGCTAGGTACATTCCTA AATCACCTGAAACTGCTCTGCCAGTGAAAAGCCTAGAAAGTTCTAGCTTCCCTGATGTTAGTGTGCCCAAGATAAATGGT GGAAGTGAGGCTAATTCAACTATTGCACATTATGGAACTTCTCGCAATCCGGATGAAGTTCACACTGACTTGCTCTTTGA TGACAATCAAGAAGGTTCTGAGCAGATGGAAGAGGTTGGAGAGTTGACAATCCACCTGGCAGGAGACGCGTGTGAAAAGG ATTTAATACAAACTGACAAATTTACCAATGATGTTGAGCAATCAGCTATTAAGCTACTTGCAGTTAGGGCACTCACAGCA GTCGAGTTAAGAAAAAAATTGCTTGGAAAGAGATTTTCTCCTAATGCAGTGGAGGCAGTGATAAGCAAGTTGCAGAGAAA AGGGTTTATCAATGATAGGTTGTATGCTGAATCATTTTCTCAATCTAGATGGTCTTCATCAAGTTGGGGGCCAAGGAGGA TCAAACAAGCACTGTTCAAGAAGGGAGTTAGTCGAGCTGATGCTGAAAAGGCACTTGAAGTGGTTTTTGAGGACAATGAT TGTGCTGAAGATCATCAGTCAATTATTGGAATGTCAAAGCAGTCCATGGATCATCTTTATGCTCAGGCCTCAAAGCAGTG GCTCAGATGTCAGAATGTACCCAAGGAGACAAGAAAATCAAGGATTGTGAGGTGGCTTCAATACCGCGGATTTGACTGGA ATGTCACTAGCTTCATCTTGAAGAAATTAGAGAGGCAGGAGCAGAATCCTCCATAG
Protein sequence (LotjaGi1g1v0013300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMMATFAANIGFKISHQFPSRVFSTARIFWRFQIACLKSREFSSSVPARYIPKSPETALPVKSLESSSFPDVSVPKING GSEANSTIAHYGTSRNPDEVHTDLLFDDNQEGSEQMEEVGELTIHLAGDACEKDLIQTDKFTNDVEQSAIKLLAVRALTA VELRKKLLGKRFSPNAVEAVISKLQRKGFINDRLYAESFSQSRWSSSSWGPRRIKQALFKKGVSRADAEKALEVVFEDND CAEDHQSIIGMSKQSMDHLYAQASKQWLRCQNVPKETRKSRIVRWLQYRGFDWNVTSFILKKLERQEQNPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 307 | 299 | 2.3E-84 | ||
| Hamap | 112 | 307 | 196 | 13.969 | ||
| Gene3D | 144 | 189 | 46 | 1.7E-7 | ||
| Pfam | 169 | 302 | 134 | 4.6E-31 | ||
| Gene3D | 191 | 234 | 44 | 4.0E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of DNA repair | Any process that modulates the frequency, rate or extent of DNA repair. |
Expression pattern of LotjaGi1g1v0013300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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