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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036388
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We have found 241 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 5.136s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0005500.1
n.a. O-methyltransferase, putative; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase; TrEMBL-Plants: tr|I3SH20|I3SH20_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0005500 LjG1.1_chr1 864921 868292 -
2 domain predictions
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LotjaGi1g1v0013300.1
n.a. Regulatory protein recX; TAIR: AT3G13226.1 regulatory protein RecX family protein; Swiss-Prot: sp|P37861|RECX_PSEFL Regulatory protein RecX; TrEMBL-Plants: tr|A0A0B2QW25|A0A0B2QW25_GLYSO Regulatory protein recX; Found in the gene: LotjaGi1g1v0013300 LjG1.1_chr1 1698966 1704284 +
2 domain predictions
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LotjaGi1g1v0013300.2
n.a. Regulatory protein recX; TAIR: AT3G13226.1 regulatory protein RecX family protein; Swiss-Prot: sp|Q7VNS6|RECX_HAEDU Regulatory protein RecX; TrEMBL-Plants: tr|A0A0B2QW25|A0A0B2QW25_GLYSO Regulatory protein recX; Found in the gene: LotjaGi1g1v0013300 LjG1.1_chr1 1699028 1704275 +
2 domain predictions
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LotjaGi1g1v0052100.1
n.a. Heat shock transcription factor; TAIR: AT1G46264.1 heat shock transcription factor B4; Swiss-Prot: sp|Q7XHZ0|HFB4B_ORYSJ Heat stress transcription factor B-4b; TrEMBL-Plants: tr|A0A0L9UVT9|A0A0L9UVT9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0052100 LjG1.1_chr1 7354422 7356970 +
2 domain predictions
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LotjaGi1g1v0055600.1
n.a. La-related protein; TAIR: AT5G21160.2 LA RNA-binding protein; Swiss-Prot: sp|Q940X9|LRP1A_ARATH La-related protein 1A; TrEMBL-Plants: tr|A0A0B2S1Z3|A0A0B2S1Z3_GLYSO La-related protein; Found in the gene: LotjaGi1g1v0055600 LjG1.1_chr1 7828557 7836943 +
2 domain predictions
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LotjaGi1g1v0055600.2
n.a. La-related protein; TAIR: AT5G21160.2 LA RNA-binding protein; Swiss-Prot: sp|Q940X9|LRP1A_ARATH La-related protein 1A; TrEMBL-Plants: tr|A0A0B2S1Z3|A0A0B2S1Z3_GLYSO La-related protein; Found in the gene: LotjaGi1g1v0055600 LjG1.1_chr1 7828565 7836943 +
2 domain predictions
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LotjaGi1g1v0066100.1
n.a. Disease resistance protein; TAIR: AT3G14470.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3; TrEMBL-Plants: tr|G7K723|G7K723_MEDTR Disease resistance protein RGA4; Found in the gene: LotjaGi1g1v0066100 LjG1.1_chr1 9110106 9116462 -
2 domain predictions
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LotjaGi1g1v0066100.2
n.a. Disease resistance protein; TAIR: AT3G14470.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3; TrEMBL-Plants: tr|G7K723|G7K723_MEDTR Disease resistance protein RGA4; Found in the gene: LotjaGi1g1v0066100 LjG1.1_chr1 9110111 9116477 -
2 domain predictions
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LotjaGi1g1v0066100.3
n.a. Disease resistance protein; TAIR: AT3G14470.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3; TrEMBL-Plants: tr|G7K723|G7K723_MEDTR Disease resistance protein RGA4; Found in the gene: LotjaGi1g1v0066100 LjG1.1_chr1 9110111 9116477 -
2 domain predictions
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LotjaGi1g1v0066100.4
n.a. Disease resistance protein; TAIR: AT3G14470.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3; TrEMBL-Plants: tr|G7K723|G7K723_MEDTR Disease resistance protein RGA4; Found in the gene: LotjaGi1g1v0066100 LjG1.1_chr1 9110392 9116462 -
2 domain predictions
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LotjaGi1g1v0092300.1
n.a. HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0092300 LjG1.1_chr1 13568955 13570373 -
2 domain predictions
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LotjaGi1g1v0109900.1
n.a. O-methyltransferase; TAIR: AT4G35160.1 O-methyltransferase family protein; Swiss-Prot: sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase; TrEMBL-Plants: tr|I3SKV8|I3SKV8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0109900 LjG1.1_chr1 17171747 17173636 -
2 domain predictions
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LotjaGi1g1v0110800.1
n.a. O-methyltransferase; TAIR: AT4G35160.1 O-methyltransferase family protein; Swiss-Prot: sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase; TrEMBL-Plants: tr|I3SKV8|I3SKV8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0110800 LjG1.1_chr1 17279521 17281447 -
2 domain predictions
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LotjaGi1g1v0110900.1
n.a. O-methyltransferase; TAIR: AT4G35160.1 O-methyltransferase family protein; Swiss-Prot: sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase; TrEMBL-Plants: tr|I3SKV8|I3SKV8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0110900 LjG1.1_chr1 17282873 17284633 -
2 domain predictions
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LotjaGi1g1v0111000.1
n.a. O-methyltransferase; TAIR: AT4G35160.1 O-methyltransferase family protein; Swiss-Prot: sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase; TrEMBL-Plants: tr|I3SKV8|I3SKV8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0111000 LjG1.1_chr1 17303319 17306678 -
2 domain predictions
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LotjaGi1g1v0124300.1
n.a. Disease resistance protein; TAIR: AT3G14470.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2; TrEMBL-Plants: tr|G7K723|G7K723_MEDTR Disease resistance protein RGA4; Found in the gene: LotjaGi1g1v0124300 LjG1.1_chr1 19703923 19708993 +
2 domain predictions
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LotjaGi1g1v0150000.1
n.a. electron protein, putative (Protein of unknown function, DUF547); TAIR: AT4G08550.2 electron carrier/ protein disulfide oxidoreductase; Swiss-Prot: sp|Q5AW24|IML1_EMENI Vacuolar membrane-associated protein iml1; TrEMBL-Plants: tr|A0A1J7HL05|A0A1J7HL05_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0150000 LjG1.1_chr1 25768004 25774927 -
2 domain predictions
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LotjaGi1g1v0180600.1
n.a. Peroxisomal membrane protein PEX14; TAIR: AT5G62810.1 peroxin 14; Swiss-Prot: sp|Q9FXT6|PEX14_ARATH Peroxisomal membrane protein PEX14; TrEMBL-Plants: tr|A0A0S3RFU7|A0A0S3RFU7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0180600 LjG1.1_chr1 35123142 35127703 -
2 domain predictions
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LotjaGi1g1v0184200.1
n.a. E2F transcription factor; TAIR: AT3G48160.2 DP-E2F-like 1; Swiss-Prot: sp|Q8LSZ4|E2FE_ARATH E2F transcription factor-like E2FE; TrEMBL-Plants: tr|A0A0S3RGB4|A0A0S3RGB4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0184200 LjG1.1_chr1 36043233 36047921 -
2 domain predictions
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LotjaGi1g1v0187700.1
n.a. Protein serine/threonine kinase; TAIR: AT3G51270.1 protein serine/threonine kinase; Swiss-Prot: sp|Q54T05|RIO2_DICDI Serine/threonine-protein kinase rio2; TrEMBL-Plants: tr|I1MZH4|I1MZH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0187700 LjG1.1_chr1 36746824 36756507 -
2 domain predictions
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LotjaGi1g1v0187700.2
n.a. Protein serine/threonine kinase; TAIR: AT3G51270.1 protein serine/threonine kinase; Swiss-Prot: sp|Q54T05|RIO2_DICDI Serine/threonine-protein kinase rio2; TrEMBL-Plants: tr|I1MZH4|I1MZH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0187700 LjG1.1_chr1 36746839 36756528 -
2 domain predictions
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LotjaGi1g1v0187700.3
n.a. Protein serine/threonine kinase; TAIR: AT3G51270.1 protein serine/threonine kinase; Swiss-Prot: sp|Q54T05|RIO2_DICDI Serine/threonine-protein kinase rio2; TrEMBL-Plants: tr|I1MZH4|I1MZH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0187700 LjG1.1_chr1 36746998 36754708 -
2 domain predictions
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LotjaGi1g1v0187700.4
n.a. Protein serine/threonine kinase; TAIR: AT3G51270.1 protein serine/threonine kinase; Swiss-Prot: sp|Q54T05|RIO2_DICDI Serine/threonine-protein kinase rio2; TrEMBL-Plants: tr|K7LRG4|K7LRG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0187700 LjG1.1_chr1 36747343 36754415 -
2 domain predictions
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LotjaGi1g1v0205000.1
n.a. Transcription factor; TAIR: AT5G03415.1 Transcription factor DP; Swiss-Prot: sp|Q9FNY2|DPB_ARATH Transcription factor-like protein DPB; TrEMBL-Plants: tr|A0A151SD62|A0A151SD62_CAJCA Transcription factor Dp-1; Found in the gene: LotjaGi1g1v0205000 LjG1.1_chr1 44306403 44310233 +
2 domain predictions
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LotjaGi1g1v0205100.1
n.a. Transcription factor; TAIR: AT5G03415.1 Transcription factor DP; Swiss-Prot: sp|Q9FNY2|DPB_ARATH Transcription factor-like protein DPB; TrEMBL-Plants: tr|A0A151SD62|A0A151SD62_CAJCA Transcription factor Dp-1; Found in the gene: LotjaGi1g1v0205100 LjG1.1_chr1 44319380 44333436 +
2 domain predictions
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LotjaGi1g1v0205100.2
n.a. Transcription factor; TAIR: AT5G03415.1 Transcription factor DP; Swiss-Prot: sp|Q9FNY2|DPB_ARATH Transcription factor-like protein DPB; TrEMBL-Plants: tr|A0A151SD62|A0A151SD62_CAJCA Transcription factor Dp-1; Found in the gene: LotjaGi1g1v0205100 LjG1.1_chr1 44319438 44333123 +
2 domain predictions
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LotjaGi1g1v0248200.1
n.a. electron protein, putative (Protein of unknown function, DUF547); TAIR: AT4G08550.2 electron carrier/ protein disulfide oxidoreductase; Swiss-Prot: sp|Q8TB45|DPTOR_HUMAN DEP domain-containing mTOR-interacting protein; TrEMBL-Plants: tr|A0A0B2PNK6|A0A0B2PNK6_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0248200 LjG1.1_chr1 59634276 59638914 -
2 domain predictions
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LotjaGi1g1v0264000.1
n.a. SWI/SNF complex subunit SWI3C; TAIR: AT1G21700.1 SWITCH/sucrose nonfermenting 3C; Swiss-Prot: sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C; TrEMBL-Plants: tr|G7J4Z5|G7J4Z5_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0264000 LjG1.1_chr1 64650364 64665077 +
2 domain predictions
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LotjaGi1g1v0264000.2
n.a. SWI/SNF complex subunit SWI3C; TAIR: AT1G21700.1 SWITCH/sucrose nonfermenting 3C; Swiss-Prot: sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C; TrEMBL-Plants: tr|G7J4Z5|G7J4Z5_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0264000 LjG1.1_chr1 64650974 64664536 +
2 domain predictions
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LotjaGi1g1v0268900.1
n.a. O-methyltransferase; TAIR: AT4G35160.1 O-methyltransferase family protein; Swiss-Prot: sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase; TrEMBL-Plants: tr|I1JJX3|I1JJX3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0268900 LjG1.1_chr1 65540271 65550352 +
2 domain predictions
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LotjaGi1g1v0281500.1
n.a. RNA polymerase sigma factor; TAIR: AT5G24120.1 sigma factor E; Swiss-Prot: sp|Q9ZNX9|SIGE_ARATH RNA polymerase sigma factor sigE, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1KAN0|I1KAN0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0281500 LjG1.1_chr1 68623598 68628758 -
2 domain predictions
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LotjaGi1g1v0299800.1
n.a. O-methyltransferase, putative; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase; TrEMBL-Plants: tr|I3SJD0|I3SJD0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0299800 LjG1.1_chr1 72490351 72495474 -
2 domain predictions
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LotjaGi1g1v0336400.1
n.a. SWI/SNF complex subunit SWI3A; TAIR: AT2G47620.1 SWITCH/sucrose nonfermenting 3A; Swiss-Prot: sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A; TrEMBL-Plants: tr|G7J3D7|G7J3D7_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0336400 LjG1.1_chr1 79598271 79604703 +
2 domain predictions
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LotjaGi1g1v0355900.1
n.a. Heat shock transcription factor; TAIR: AT1G46264.1 heat shock transcription factor B4; Swiss-Prot: sp|Q9C635|HSFB4_ARATH Heat stress transcription factor B-4; TrEMBL-Plants: tr|G7J6F2|G7J6F2_MEDTR Heat shock transcription factor; Found in the gene: LotjaGi1g1v0355900 LjG1.1_chr1 82773625 82775575 -
2 domain predictions
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LotjaGi1g1v0367500.2
n.a. Heat shock transcription factor; TAIR: AT2G26150.1 heat shock transcription factor A2; Swiss-Prot: sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30; TrEMBL-Plants: tr|I1JTX5|I1JTX5_SOYBN Heat shock transcription factor HSFA2; Found in the gene: LotjaGi1g1v0367500 LjG1.1_chr1 84550386 84555331 +
2 domain predictions
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LotjaGi1g1v0393200.1
n.a. Replication protein A 32 kDa subunit-like protein; TAIR: AT2G24490.1 replicon protein A2; Swiss-Prot: sp|Q9ZQ19|RFA2A_ARATH Replication protein A 32 kDa subunit A; TrEMBL-Plants: tr|I3SHT3|I3SHT3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0393200 LjG1.1_chr1 87774747 87780576 -
2 domain predictions
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LotjaGi1g1v0400000.1
n.a. La protein like; TAIR: AT4G32720.2 La protein 1; Swiss-Prot: sp|Q93ZV7|LA1_ARATH La protein 1; TrEMBL-Plants: tr|I1K995|I1K995_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0400000 LjG1.1_chr1 88736591 88740914 +
2 domain predictions
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LotjaGi1g1v0424300.1
n.a. Transcription initiation factor IIF subunit beta; TAIR: AT1G75510.1 Transcription initiation factor IIF, beta subunit; Swiss-Prot: sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta; TrEMBL-Plants: tr|I3T827|I3T827_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0424300 LjG1.1_chr1 91883797 91891132 -
2 domain predictions
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LotjaGi1g1v0424300.2
n.a. Transcription initiation factor IIF subunit beta; TAIR: AT1G75510.1 Transcription initiation factor IIF, beta subunit; Swiss-Prot: sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta; TrEMBL-Plants: tr|I3T827|I3T827_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0424300 LjG1.1_chr1 91885016 91891038 -
2 domain predictions
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LotjaGi1g1v0425700.1
n.a. Lysine-specific histone demethylase 1 like 1; TAIR: AT4G16310.1 LSD1-like 3; Swiss-Prot: sp|F4JLS1|LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3; TrEMBL-Plants: tr|A0A072V301|A0A072V301_MEDTR Polyamine oxidase; Found in the gene: LotjaGi1g1v0425700 LjG1.1_chr1 92008591 92020282 -
2 domain predictions
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LotjaGi1g1v0428700.1
n.a. Transcription factor; TAIR: AT1G47870.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FV70|E2FC_ARATH Transcription factor E2FC; TrEMBL-Plants: tr|A0A151TCJ9|A0A151TCJ9_CAJCA Transcription factor E2F4; Found in the gene: LotjaGi1g1v0428700 LjG1.1_chr1 92370291 92375112 -
2 domain predictions
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LotjaGi1g1v0431200.1
n.a. La-related; TAIR: AT4G35890.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q94K80|LRP1C_ARATH La-related protein 1C; TrEMBL-Plants: tr|A0A151RUU0|A0A151RUU0_CAJCA La-related protein 1B; Found in the gene: LotjaGi1g1v0431200 LjG1.1_chr1 92616619 92621188 -
2 domain predictions
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LotjaGi1g1v0508300.1
n.a. O-methyltransferase; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|P93324|CHOMT_MEDSA Isoliquiritigenin 2'-O-methyltransferase; TrEMBL-Plants: tr|A0A0R0F4I8|A0A0R0F4I8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0508300 LjG1.1_chr1 102696545 102699613 -
2 domain predictions
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LotjaGi1g1v0513400.1
n.a. O-methyltransferase, putative; TAIR: AT4G35150.1 O-methyltransferase family protein; Swiss-Prot: sp|Q84KK5|D7OMT_GLYEC Isoflavone 7-O-methyltransferase; TrEMBL-Plants: tr|I3SP90|I3SP90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0513400 LjG1.1_chr1 103539608 103541900 -
2 domain predictions
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LotjaGi1g1v0524000.1
n.a. DNA-directed RNA polymerase III subunit RPC6; TAIR: AT5G23710.1 DNA binding / DNA-directed RNA polymerase; Swiss-Prot: sp|O94553|RPC6_SCHPO Probable DNA-directed RNA polymerase III subunit rpc6; TrEMBL-Plants: tr|I3SJX0|I3SJX0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0524000 LjG1.1_chr1 104902965 104905105 +
2 domain predictions
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LotjaGi1g1v0556700.1
n.a. RNA polymerase sigma factor; TAIR: AT1G08540.1 RNApolymerase sigma subunit 2; Swiss-Prot: sp|O22056|SIGB_ARATH RNA polymerase sigma factor sigB; TrEMBL-Plants: tr|K7KHD7|K7KHD7_SOYBN RNA polymerase sigma factor; Found in the gene: LotjaGi1g1v0556700 LjG1.1_chr1 108876942 108881659 -
2 domain predictions
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LotjaGi1g1v0569600.1
n.a. SWI/SNF complex subunit SWI3B-like protein; TAIR: AT2G33610.1 switch subunit 3; Swiss-Prot: sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B; TrEMBL-Plants: tr|I1K790|I1K790_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0569600 LjG1.1_chr1 110246313 110252412 -
2 domain predictions
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LotjaGi1g1v0672000.1
n.a. Heat Stress Transcription Factor family protein; TAIR: AT2G41690.1 heat shock transcription factor B3; Swiss-Prot: sp|O22230|HSFB3_ARATH Heat stress transcription factor B-3; TrEMBL-Plants: tr|I1JNB9|I1JNB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672000 LjG1.1_chr1 123639278 123643552 +
2 domain predictions
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LotjaGi1g1v0672000.2
n.a. Heat Stress Transcription Factor family protein; TAIR: AT2G41690.1 heat shock transcription factor B3; Swiss-Prot: sp|O22230|HSFB3_ARATH Heat stress transcription factor B-3; TrEMBL-Plants: tr|I1JNB9|I1JNB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672000 LjG1.1_chr1 123639677 123643044 +
2 domain predictions
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LotjaGi1g1v0689200.1
n.a. RNA polymerase sigma factor; TAIR: AT2G36990.1 RNApolymerase sigma-subunit F; Swiss-Prot: sp|Q9LD95|SIGF_ARATH RNA polymerase sigma factor sigF, chloroplastic; TrEMBL-Plants: tr|A0A151TIX7|A0A151TIX7_CAJCA RNA polymerase sigma factor; Found in the gene: LotjaGi1g1v0689200 LjG1.1_chr1 125689612 125694637 -
2 domain predictions
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