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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0013300 |
| Transcript ID | LotjaGi1g1v0013300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulatory protein recX; TAIR: AT3G13226.1 regulatory protein RecX family protein; Swiss-Prot: sp|Q7VNS6|RECX_HAEDU Regulatory protein RecX; TrEMBL-Plants: tr|A0A0B2QW25|A0A0B2QW25_GLYSO Regulatory protein recX; Found in the gene: LotjaGi1g1v0013300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1699028..1704275) extracted from Lotus japonicus Gifu genome v1.2.
GACGGATTCAATTTCAGATGAATATACTCTTTATATCCTCGATATTTAACCCTATAATCTTTTTTATTTTTGATCATCAC AAATAGTGGGAAGCTCTTGGTAACTAGCCACAAATTTTGGCTACATGACGATGATGGCAACTTTCGCGGCAAATATTGGC TTCAAAATCTCTCATCAGTTTCCGTCTCGCGTTTTTTCAACTGCCCGGTGAGTAATTCTCAGTTGGGGTATCAAAATGAC ACCAAAGTTTGATTTTTTCATTCTAATTATGTAATGGAGTTCTAATTTAGCTACCCAATTGGTTGTGTTGCATTGACTTG ATGTCAATTCTCATAAAAGACTCAGCTTTTAATAGGGATAGATAGATTTTGAAATTTTTTGGCTTTGATTCTTACCCTTC TTCTTTTTTTGTTAAAAATAGGATCTTTTGGAGGTTTCAGATTGCTTGCTTGAAGAGCAGAGAGTTTAGTTCTTCTGTTC CTGCTAGGTACATTCCTAAATCACCTGAAACTGCTCTGCCAGTGAAAAGCCTAGAAAGTTCTAGCTTCCCTGATGTTAGT GTGCCCAAGATAAATGGTGGAAGTGAGGCTAATTCAACTATTGCACATTATGGAACTTCTCGCAATCCGGATGAAGTTCA CACTGACTTGCTCTTTGATGACAATCAAGAAGGTAAACTGCTTTCTAACAACTTCTAGTGTGACATATAGTAGTTCATTA TTTCGGGGTTAGTTTTGCTTTACTATACACTATTGCCTATTCGTGGCTCGCTAATCGCCAAAGATTTGTGATTTTAAGCA TTTCAATTATATTTGATGCCGGGCATGTGATTGAAGATACATTATTTTTTTATAGTGACATTGGATAAATACACAAGTCC TGATATTCTTTAGATAGACCTGATATTTTAAATACATAAGAGATTATTCACTTCGGGGTTTGGAGGTCTCATTGTGATTG ATAAGTCGAATAAAATTGAACTTAATTTGATAATTAGCAACATAAACACGGAAGAAAAGTCAAGCGTGGTTGTCTTGTGG TTAACTAAGTTAATTTTCTCCAGCTCTCATATGATCTCCTCAACTGTTAAGATCGAGGATTGATGATAGGTTCATGCTTC TAGATTCACCGTGTTCATTTTTTCTGAGATACAAATTAACACATGTTGTCTTGTTAGAACCTGTTTTAGCTCTCAACTTG GGCTTCTTTTTACCAATCTGTTTTAATGGAATAACCGGATGTAGAATCAACCAGGATGATTAGAAATGATATTGCACATA AAACGTGTATAATATAGGAAGTGAAGTTGTTCTAAACATCTTAATTTGTGGATTGTAGGTTCTGAGCAGATGGAAGAGGT TGGAGAGTTGACAATCCACCTGGCAGGAGACGCGTGTGAAAAGGATTTAATACAAACTGACAAATTTACCAATGATGTTG AGCAATCAGCTATTAAGCTACTTGCAGTTAGGTTAATGCCCCCTGCCCTGAAAACAGAAGTTATTTAATGCTAGACTTGT TATGTTATGTTAAGTATGGTCAACAAAATCACGAGCATGATGTTTCCTTGTTCAGTGCAAGAGAAATCATTTTTATCATG CTACTATGAGTTTACTGTAAATATGCCATTTTGCTTCTCTCTTTGCATGGTTTGTTCATAACACCAACAGTAAATTGCCA CTATGCTTACTGCTTCCTGTTGAGAGAACTGCCTTTTGATTTTGACTCAGTATATCAAGTATTTGCCTTCTCTCAACACT GCCATTAAGATTTTTGAAGAAAACTGATGATATGCTATGAGCCTATAACTGAAAGCTAAAAAATTATTTTAAAGCATAGG CATTTTATTTCGCATTTTTTTAAACTATCTGTTTAAAAATATCCCATATTTATCTTCAACCTTAAATTTCATCTTGATTG GAGTAGTTTGCATATCATTATATCAATGAATAGGGTAATTCTGAATGAAGCATAGCTTACTTGGCATGCCTTTTGAAAAA TTTAGCAAATTGTTAGAAACAATTAATTTCCTGAATTTGTGTTTCTTAGAAGTTAAGGGAATAAGTTCTGTGATAACTGA TAATTCAAGTCAACTTATATCTTTTGCCAGTTGGGAGTGTGTGCAATCTGCATTTACATTTAATGTGAAATGCGGTCTTT TATTAAGCTTGCCTGTCTCTCTGCTCTGCAGGGCACTCACAGCAGTCGAGTTAAGAAAAAAATTGCTTGGAAAGAGATTT TCTCCTAATGCAGTGGAGGCAGTGATAAGCAAGTTGCAGAGAAAGTATGTTGTTAACTTCATGTAAAATCTGTTCAGCTG TTATTTACCAGCTACTTTTATATGAACTTTACCTGAATCTCTACATGCTTCCAGACAACTACTTCCTCAACTTGGTTCCC ATAATGTTTTATTTATGGACAACAAAATGAGAGTAATATGTGTTATTTGATTCCTGGCCTTGAAAATGAGATGCCTGCAA TTAGAGATGCAGTTGGTTATCATGACAATGATTTGGAATGCAGCTCTAGCCAACTGTTAATTCAGTCATTGTGTCTAACT GGATGTAGAGTAGTAGTCAAAAAATGATTGTTTTGGACATTTTAGAGTAACCCACTTTATGCAGTTGGGAGTAATGAGTA TGTTTATTTACAATTTTAACTTCGAAGTCGTTGTTACATGGAGCTCTTTTTTTTTAATGATAGGTAACAATTGCCACCAC TTTTTAAGTTCTTAGTGTTCAGAAAATTTATATTAAATTTGAACACATAATTAATTTATGTATGCAAATAAAATTCCCTT CTTATTTAAAATAACCTGTCATATCTCATATAAGAATTATTCATTTTGCAAAAGTTATCATAAACTTTCTCTTCTGTTTG ACAAATAATTACCTTGTCTTGTGTAGTACTTTTCATAATGCACCTTTTCAAGTTCATTTATAAAACATGAATTCGCAAAC ATTTTTATACATGTTGTGGATTTGTGGTGATCCTTTAATCCCTTTATTTGTACCAGAGGGTTTATCAATGATAGGTTGTA TGCTGAATCATTTTCTCAATCTAGATGGTCTTCATCAAGTTGGGGGCCAAGGAGGATCAAACAAGTAAGCTAGTCCATAT TGTACTTTTGTTCAGCCTGTTACTTTTTTGCTTTCTTATACATTGCCTCACTGCTATTCCATTCTGTCTTTTTCCTTGCT ATGTCATTAGTCTCGTTGCCAAGCAAAAGAGGAAATGATTCTGTCAGTATTATGCTTCTGTTGTGCTTTCTAAGTTTAAT TACATCTTTTCCTGCTTGACTTGTGTTATAGTTTATTTTACTTGGTGAGTTGCTTGCCAAATGCAAAGTTCCCACCCAAT AATTTTAAACTAAACTTATAATTTATCTGATTGAATGCTTTTAAAAAATATTAAATATAATAATAATAATCATACGTGTG TTTCATTTTAAATTTGAGTTTATAGATTGCACGGTGGGTTTAAAACAGCAACCTTTAATTCTTTAATTTAATTATGATAC TTAATTTTTTTTTTTGAAACGATACTTTAAATCATAACTACACAATATAACATTAAAAACGGAAAAATCACATGAGAATA TGATAGTATGACTTGGTCTTTTGATTGTTTCTCACTACTTCAGCAAAATAGGAAGAGAATCCGGAGTCAAAATAAGAGTA CCAGAAAAATAGGATATTTGCTATAACAGAATGGAACAATTTGCACTATAAGAATGAATGTTATCTCACTCTTGAAGCAA TTCACCGTTCGCAATTCTCACCTTCACCATTCACGATTCTTTTTCTTCTTCTTCTCCTTCTCAGAATCTCCATTTGCGAT TTGAGATCCTCCATTGACGCTCAATCTGCAGCTCTCGTCTTAAAGTATGTACGTGTGTCTTCTTTTTGTTCTCACAAGTT TATGGAATGCTCTCCATTTTGTGATTTCTGATTTATTTCTAATTTTGCATTTTGTTTCTCTTTGGAATCACAGATTAAGA TTAAGCAGAGATTCTCAGGAGTGGGAACCTTAACATTGTTAGCAAATATCCTATTTTTCTGGTACTCTTATTTTGACTCC GGATTCTCTTCCTATTTTGCTGAAGTAGTGAGAAACAATCAAAAGACCAAGTCATACTATCATATTCTCATGTGATTTTT CCGTTTTTAATGTTATATTGTGCAGTTATGATTTAAAGTATCATTTCAAAAAAATAATTAAGTATCATAATTAAATTAAA GAATTAAAGGTTGCTGTTTTAAACCCACCGTGCAATCTATAAACTCAAATTTAAAATGAAATATATGTATGATTATTATT ATTATATTTAATATTTTTTAAAATTATTATATTTAAATATAATAAACCGGGCTGCCGTTTTTTTAATGGACTGCAATTGT GTTGCCAGGCACTGTTCAAGAAGGGAGTTAGTCGAGCTGATGCTGAAAAGGCACTTGAAGTGGTTTTTGAGGACAATGAT TGTGCTGAAGATCATCAGTCAATTATTGGAATGTCAAAGCAGTCCATGGATCATCTTTATGCTCAGGCCTCAAAGCAGTG GCTCAGATGTCAGAATGTACCCAAGGAGACAAGAAAATCAAGGATTGTGAGGTGGCTTCAATACCGCGGATTTGACTGGA ATGTCACTAGCTTCATCTTGAAGAAATTAGAGAGGCAGGAGCAGAATCCTCCATAGTGCACACAATAGGGACATCCAAAG TTCATACCAATCTGGAAATCCAATGGCGGGGTCCGTACAAGTTTCTTGTATTGTTTAGTGTGTAAAAGGGTAGGGTTGAA GCCTCCATTGACTCATAATGGTGTTGCAAACAAACTAGCATTTGATTGCTTCAATGTGCTCTAGGCCATATGGAATCGGA GCACACAAGACTATTCTTGTCTGAGTACATTGAAGCTACTTTTTTTTACACTCAGGCTGAGATAAGGAACAAGCACCACT GAGGACTGAGGAGGTTCTACTTGTGATCCACTTGTCTGGCCAGTCTTGGAGATAAGCAACTCTTTGGTACTCTTGTATTA CTGAAGTTTCGTGCTCAAAGAAGTTACAATGCTATTTATTGGTTAATTTATTTGATCTGAATCATGTTTATGAGAAATTG TATTGAACCTCATCAGCTTCAAGTTCTTGCAAATATTATTTCCAACTTTTTCATTTTGGCAATATGCCCCTTCAACTAAA AAAATGTTATAATAGTTGATTTTTTTTGTTAATAAAAACCGGTCCGAG
CDS sequence (LotjaGi1g1v0013300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGATGATGGCAACTTTCGCGGCAAATATTGGCTTCAAAATCTCTCATCAGTTTCCGTCTCGCGTTTTTTCAACTGC CCGGATCTTTTGGAGGTTTCAGATTGCTTGCTTGAAGAGCAGAGAGTTTAGTTCTTCTGTTCCTGCTAGGTACATTCCTA AATCACCTGAAACTGCTCTGCCAGTGAAAAGCCTAGAAAGTTCTAGCTTCCCTGATGTTAGTGTGCCCAAGATAAATGGT GGAAGTGAGGCTAATTCAACTATTGCACATTATGGAACTTCTCGCAATCCGGATGAAGTTCACACTGACTTGCTCTTTGA TGACAATCAAGAAGGTTCTGAGCAGATGGAAGAGGTTGGAGAGTTGACAATCCACCTGGCAGGAGACGCGTGTGAAAAGG ATTTAATACAAACTGACAAATTTACCAATGATGTTGAGCAATCAGCTATTAAGCTACTTGCAGTTAGGGCACTCACAGCA GTCGAGTTAAGAAAAAAATTGCTTGGAAAGAGATTTTCTCCTAATGCAGTGGAGGCAGTGATAAGCAAGTTGCAGAGAAA AGGGTTTATCAATGATAGGTTGTATGCTGAATCATTTTCTCAATCTAGATGGTCTTCATCAAGTTGGGGGCCAAGGAGGA TCAAACAAAATCTCCATTTGCGATTTGAGATCCTCCATTGA
Protein sequence (LotjaGi1g1v0013300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMMATFAANIGFKISHQFPSRVFSTARIFWRFQIACLKSREFSSSVPARYIPKSPETALPVKSLESSSFPDVSVPKING GSEANSTIAHYGTSRNPDEVHTDLLFDDNQEGSEQMEEVGELTIHLAGDACEKDLIQTDKFTNDVEQSAIKLLAVRALTA VELRKKLLGKRFSPNAVEAVISKLQRKGFINDRLYAESFSQSRWSSSSWGPRRIKQNLHLRFEILH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 219 | 211 | 3.6E-40 | ||
| Gene3D | 144 | 189 | 46 | 1.0E-7 | ||
| Pfam | 169 | 220 | 52 | 2.6E-14 | ||
| Gene3D | 191 | 221 | 31 | 4.6E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of DNA repair | Any process that modulates the frequency, rate or extent of DNA repair. |
Expression pattern of LotjaGi1g1v0013300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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