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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0013900 |
| Transcript ID | LotjaGi1g1v0013900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcineurin B-like protein; TAIR: AT5G55990.1 calcineurin B-like protein 2; Swiss-Prot: sp|Q8LAS7|CNBL2_ARATH Calcineurin B-like protein 2; TrEMBL-Plants: tr|I3SQU6|I3SQU6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0013900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1798888..1801559) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGCAGTGCATAGAGGGAATTAAGCATCTATTGGCTCCGCTATTGCAATGTTGTGACCTCGATTTATATCAGCAGTC AAGAGGCATTGGAGATCCTGAACTCCTTGCAAGAGAGACAGTGTGTATGCATCAACCTAACTTTACGATAGTTATGCATT CATTGTTACTTATGTTCTTATACAAATGAATTCTGATCTGATTACTAGCTTTTAAGATCTTATCCCACTAAGTGTGGTCA GTTATATGTATCACACGTTATACATATTAGCAATGATGAACAAGAAAAGAAAAGAAACCATATGGATGATGTTACTGTCG TGTTTTTATTTTGGATCGATTACATCTCATATTACTATTTAGAAAAATACAATAATTTGGCCTGATGATAGCCATTTGTT TTGCTACTGTACACAGTCAGTGTGAGCGAAATCGAAGCACTTTATGAGCTCTTTAAAAAGATCAGCAGTGCTGTGATTGA TGATGGGCTGATCAACAAGGTTTGTCTCTACTGTCATTGGTCAACTTGTGTTGTGGCCATATTATAAATATTGTTTACTG AGCCATATTAAAAATATATATATGATTTTCAGGAAGAGTTTCAATTGGCACTATTCAAGACGAATAAAAAAGAAAGTTTG TTTGCTGATCGGGTATTGCTTTCTTTTTCTTTTTAGCTATGCTTAACTCTACTCTACTCTGAACTATGAAAATATGTTTC TTTGATCAGATCAGGTTATGGCCATCATATACAGAAACAATAACAAATGGCACAACAAATATGTCATATCCACAATATGT GTGTGTGTAGAGAGAGAGAGAAGATGTACCAAGTTAGACAACTTTTTTTTGTGAGAGATGAACGTATTATACCTTGACCA TTAGATCTAACCATGAATGATCATAATTAAAACATAAAACCCTATGAGTTTTTTAAAAAGTCAAGTGACCGTTATATTTT TACATGCATGGTTGTACGGTCAAGATTTAACGTTCTCTTTTTTTCTTTACAGAAGTCCTCTCACTTGATGTCCCCTCCCC CCTTTATATGTGCGTTGTGTAAGGAATTTAAAATAACTTCTCACATGCTAAAGTCAATGTGTTATCTCGATTCAAAAAAA TGTGACTGCGTTGCTTATCTTGTTGTCATGGTGATAAACTTAGGGGGAACTTCATATTTACTATTTAGTTAATGTATCTT AATGGTTTGTCATAATCATTAAAATGGTATACCCTTGTTTAGAGGTTTTCTCACGTGTTCCTTAAATGTTATACATATTT TAAAGAAATTTTACTTCCGGTCCAGTATAAGTTATTTCTTAACCCTTGCAACATGTACATACATTGTTTCATGTCATTCT TTTTGTTAATATCTAATGAGCTTCTTTCTTTGTACTCTCTTAGGTATTTGATTTGTTTGACACAAAGCATAATGGGATAC TAGGTTTCGAAGAGTTTGCTCGTGCACTCTCTGTTTTCCATCCAAATGCCCCCATTGATGATAAGATTCACTGTAAGTTG TTTGAAATTGTTTCTAATGATCATATAAGGACAAAACTTATGTAGCTCAGCTTGTAATTAAGAAGGGCGTATAAATCAAC TCTTTGGTTTATTGCATGGTTCTTCTTTTAAAATATACCAAAACTAAAACCACATAATGTCTTGTTTCAGTTTCCTTTCA ATTGTATGATCTCAAGCAGCAGGGTTTTATTGAAAGGCAAGAGGTAACTAGTCATCTTTGTTTTGATGATCTTAAGCTTT TACTCCTTGTTTCGGTCTCTTAGAATATGGGGTTATGCCTAACTCTACTCCAAAGCTAGCTTAGGGGTGAGGAGTGAGGA CTGCTCTACCCTATAAAATACTTCATTATCATATCTGTAGTTAATGTGGAAATCCTCACAGAAGAGTGGAGATCACACAC TTCATATTCATCTTAAGGCCCTTATCCATCCCATCTACAAGGTGGGTTGGTCAAGTCAATTCTTTAATTTCAAATTTCAA CAGGTGGTCCAACAATGGATCTAGAATTGACTCTGATACTGTATTAGAATTTGGGCTGGGTCTAAAAAACAAAATGGCAT TCTGATGAATATGAAGTTTGTGATCTCCATTTTTCAGATGTTCAGTCGTTGGCGGAGAGTGTGTTAGAAATCTCATATTG ACTAGAGATATTGCCAAAACAATCCTTATATAGGGTAGAGCAATCATCGCCCTTAAACTAAACTAAATTTTTGTGGTAGT TAGGCCTAACTGTATCTTAAGTGGGACAACCCTAATTTTTATCTTGTGTTCGCTGTGAAGGTGAAACAAATGGTTGTTGC TACACTTGCTGAATCTGGCATGAACCTATCAGATGATGTTATAGAGAGTATAATTGACAAGGTAATACCCCTTTTCCCTA GTGAGATTCGGACTCTTCATAGTCCTTTTTTACTATTATCCTTTTATGAAAAAGATCACCTAGTTTTAACATTGGATTTT GGATTTCTTAAGACTTTTGAGGAAGCAGATACAAAGCATGACGGCAAGATTGACAAGGAGGAATGGAGGAACCTTGTTTT GCGTCATCCATCACTTTTGAAGAACATGACCCTTCAATATCTCAGGTAAATCTTAAGTCATGTACATACATTCTCTAAAT TCAAGAGAGCCACTACAGGCAAATCCAAGTAA
CDS sequence (LotjaGi1g1v0013900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGTGCATAGAGGGAATTAAGCATCTATTGGCTCCGCTATTGCAATGTTGTGACCTCGATTTATATCAGCAGTC AAGAGGCATTGGAGATCCTGAACTCCTTGCAAGAGAGACAGTGTTCAGTGTGAGCGAAATCGAAGCACTTTATGAGCTCT TTAAAAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAGGAAGAGTTTCAATTGGCACTATTCAAGACGAAT AAAAAAGAAAGTTTGTTTGCTGATCGGGTATTTGATTTGTTTGACACAAAGCATAATGGGATACTAGGTTTCGAAGAGTT TGCTCGTGCACTCTCTGTTTTCCATCCAAATGCCCCCATTGATGATAAGATTCACTTTTCCTTTCAATTGTATGATCTCA AGCAGCAGGGTTTTATTGAAAGGCAAGAGGTGAAACAAATGGTTGTTGCTACACTTGCTGAATCTGGCATGAACCTATCA GATGATGTTATAGAGAGTATAATTGACAAGACTTTTGAGGAAGCAGATACAAAGCATGACGGCAAGATTGACAAGGAGGA ATGGAGGAACCTTGTTTTGCGTCATCCATCACTTTTGAAGAACATGACCCTTCAATATCTCAGGTAA
Protein sequence (LotjaGi1g1v0013900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQCIEGIKHLLAPLLQCCDLDLYQQSRGIGDPELLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN KKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLS DDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 208 | 208 | 2.2E-137 | – | |
| PANTHER | 1 | 208 | 208 | 2.2E-137 | – | |
| Gene3D | 32 | 208 | 177 | 2.9E-62 | – | |
| SUPERFAMILY | 33 | 205 | 173 | 1.25E-46 | ||
| Pfam | 64 | 109 | 46 | 1.3E-4 | – | |
| ProSiteProfiles | 82 | 117 | 36 | 11.808 | ||
| SMART | 86 | 114 | 29 | 1.6 | ||
| PRINTS | 90 | 111 | 22 | 1.0E-5 | – | |
| ProSiteProfiles | 119 | 154 | 36 | 9.966 | ||
| Pfam | 122 | 189 | 68 | 2.0E-9 | ||
| SMART | 123 | 151 | 29 | 14.0 | ||
| PRINTS | 137 | 155 | 19 | 1.0E-5 | – | |
| ProSiteProfiles | 163 | 198 | 36 | 11.724 | ||
| SMART | 167 | 195 | 29 | 0.53 | ||
| PRINTS | 183 | 203 | 21 | 1.0E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0013900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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