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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0014300 |
| Transcript ID | LotjaGi1g1v0014300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Albumin-2 protein; TAIR: AT1G54450.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|P08688|ALB2_PEA Albumin-2; TrEMBL-Plants: tr|G7LEK7|G7LEK7_MEDTR Albumin-2 protein; Found in the gene: LotjaGi1g1v0014300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1830234..1831613) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAACATAAATAAAGAGTTCCATAAATGTTTGGGCGAGTGAAGAACGTGGTTGGAGCGATTCTTTCAAGTTTAAAAAT TTCCAAATGTTGCATGTGTAATAAATAATGAATCTCTCTTGCTGTCTGATCTCTAGCTTGTGTATGTGTATATATATAAC CTTGTTTAATTTGGTGCTTGTGCTTAATTGCATCTATCCATCGATCCCTCTTATTTACCTGCTTCTTGTTTCATATCAAT ATCATCATCATGTCTCCAATTGCTCCTGGTTCTGTAAATGCTGCATTCCGTTCATCTAAGAACAATGAAGCCTACATATT CATCAACAATGAGTATATATTGGAGGATTATGCTCCCGGATCATCGCATGACAAAATTCTGAAGGGACCATTACTTATTT CTGATGGGTTTCCATCACTCAAGGGCACACCATTTGGAGATCATGGCATAGAGTGTGCCTTTGACACTGATGGTACTGAC GCATTCATCTTCTCCGGTGAGCTTTGTGCTTTAGTAGACTACGCTAAACCAGGTGATGAGTACATGATGCTTGAATCAGG GCCAATCTATGAAATGTTTCCTCGCTTGAAGGGCACCGCGTTCGAGAAAAGGATCAACGCTGCATTCCGGTCAAGCCTAA GTAATGAAGCTTACATCTTCACAGGAGACCATTACGCTCGTATAAACTATGCTTCCAAGAAGGTGATCTACACCGATGCC ATTAAAAATGTGTGGCATTGTTTGGTAGGCACGATCTTTGAAAGTGGAATTGAAGCGGCTTTTGCTTCTCATAGGACTGA GGAAGCTTACTTCTTCAAAGGAGATCAGTATGCACGTATCAAGTTTACTCCAGGCAAAAATGAAGACTACGACATTATTG ATAAAGTCAAGCCTATCAAACCTTCTTGGAACGCTCTTGGTGACCTCTTGGAACGCAAGAACAGTACCAAGGTTTGAGCA CGATCGATGATGCTAATGGGTGTCCAATTTCTCTCGACATGAATAGCACACTAGCTCTAATGTGGTGATTTTCAATAAAA TATTTCAGATCGATCAATTATGATCAGTTTCTTTTAGTGGTACCTTACTACCTTAGGAATAAAGACTTCCCTAGTTGGTG TGTTTGCTTTATATTCCTCAATGTGATGTGTGTGCTGTTTCTTTCCAACTATGAAATGTCTAATAATAATATGCATGTGT GGCAATTTGTTTTCAAATCTCAATATAATGTGTGCGAGCTAGGCTGTTTGAAAATAATTGTAAAAAAAAAAAATACATAC TAAAAAATATAGTTATAATAGTGTTAAACATTTTTAATATAATAGTGTTCCCGAAGAGAAAGTCCAGAGACTAATATCTA ATTATTATAATTTATCTTTC
CDS sequence (LotjaGi1g1v0014300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCAATTGCTCCTGGTTCTGTAAATGCTGCATTCCGTTCATCTAAGAACAATGAAGCCTACATATTCATCAACAA TGAGTATATATTGGAGGATTATGCTCCCGGATCATCGCATGACAAAATTCTGAAGGGACCATTACTTATTTCTGATGGGT TTCCATCACTCAAGGGCACACCATTTGGAGATCATGGCATAGAGTGTGCCTTTGACACTGATGGTACTGACGCATTCATC TTCTCCGGTGAGCTTTGTGCTTTAGTAGACTACGCTAAACCAGGTGATGAGTACATGATGCTTGAATCAGGGCCAATCTA TGAAATGTTTCCTCGCTTGAAGGGCACCGCGTTCGAGAAAAGGATCAACGCTGCATTCCGGTCAAGCCTAAGTAATGAAG CTTACATCTTCACAGGAGACCATTACGCTCGTATAAACTATGCTTCCAAGAAGGTGATCTACACCGATGCCATTAAAAAT GTGTGGCATTGTTTGGTAGGCACGATCTTTGAAAGTGGAATTGAAGCGGCTTTTGCTTCTCATAGGACTGAGGAAGCTTA CTTCTTCAAAGGAGATCAGTATGCACGTATCAAGTTTACTCCAGGCAAAAATGAAGACTACGACATTATTGATAAAGTCA AGCCTATCAAACCTTCTTGGAACGCTCTTGGTGACCTCTTGGAACGCAAGAACAGTACCAAGGTTTGA
Protein sequence (LotjaGi1g1v0014300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPIAPGSVNAAFRSSKNNEAYIFINNEYILEDYAPGSSHDKILKGPLLISDGFPSLKGTPFGDHGIECAFDTDGTDAFI FSGELCALVDYAKPGDEYMMLESGPIYEMFPRLKGTAFEKRINAAFRSSLSNEAYIFTGDHYARINYASKKVIYTDAIKN VWHCLVGTIFESGIEAAFASHRTEEAYFFKGDQYARIKFTPGKNEDYDIIDKVKPIKPSWNALGDLLERKNSTKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 228 | 225 | 3.9E-73 | ||
| ProSiteProfiles | 6 | 57 | 52 | 9.437 | ||
| SMART | 9 | 59 | 51 | 6.8 | ||
| SUPERFAMILY | 9 | 206 | 198 | 3.59E-22 | ||
| ProSiteProfiles | 119 | 165 | 47 | 10.254 | ||
| SMART | 122 | 164 | 43 | 0.26 | ||
| Pfam | 122 | 148 | 27 | 8.5E-5 | ||
| ProSiteProfiles | 171 | 223 | 53 | 10.798 | ||
| Pfam | 174 | 200 | 27 | 1.1E-6 | ||
| SMART | 174 | 216 | 43 | 0.0061 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0014300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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