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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0014700 |
| Transcript ID | LotjaGi1g1v0014700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleotide-sugar transporter family protein; TAIR: AT5G55950.1 Nucleotide/sugar transporter family protein; Swiss-Prot: sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890; TrEMBL-Plants: tr|I3S6Y6|I3S6Y6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0014700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1928429..1932154) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAAAAAAGTTAGAGTGAGATGAAACTTTTGAATTAAAGTGTGTTGATATCTTAACATCTTATCATAAAATGAGGATT TATTCATGAATCTCTCACCTAAAACTAAAAGAGTATTTGGCGGTTGTTGCAACATATGTCTTGACTGATTCCTAATGATA TAACAACATTTCATGATGTTACCTTAACTTCCCCGTAAATCAACAGCTACATCAACATACGAAACAGACAAGTGTTACTT ATAATAATACCCTCACCAAGAGTTCAAGTATTTTGAATCGAGAAACACGTGTTGCCAAATTGGTGGAAGCCATTTCAAAT GCACATTCTCCCTAGAACATGAAGAAGCAAATGTTCTTCACTTCCTTTTTTTTCTTCTTTTTCTCTTTTGTTCCTTAGAA ACCCCTCCATGAAGAATGTCAATGTTCTGTTTTCTAGACACCCTTCAACACATTGATTGTGTTTAAAGCAACTAGGCCTA TTAATTAATCCATATATACATGCCCCTTTTTTCCTTTGCCTTTCTGCTTTGGCTTCTTTTTGTGATTGGAACAGTATTGT GGAATCAAAAGAGGGTCCCTTGCGCATTTTGATTAAATATGTGATCCAAGTCCATGAATAAGCTTGGTTGCTATGGGGTG GTTGGATTCCCTGTTTGGGGAAGGACGAAAAGTTATTAAAAGGAAGGACAGTGATGCTGGAGAAGCAGGTTTTTTTTTAT TTCTTAGCTCATATATCATTGTTTTTTATTACGTGCATAGTTTTATATAATGTATCAAAAAAAAAATTAGTTTTATATAA TGTATATCAAATTTTAGTTTTTACCTCAATTCATGTGTTCTTGAATTTCTAGGATTAGCTTTTCAACTTTGCTATGGTCA ATTATTCAGAGATTAGATTTAAACTCTCTTAAGCTAATTATTACTTTCCCTTGGCCATTATGTGTGAGATTATATTTTAT CAGCCAAGAAGATGGTGTTTTATATGTGCTATTTTATTTTCTGCAAATTTGGTTGATGTTCACACTACCCAATTCCAAAA ATGGAATCATCTTTTAGAACCACTTTGTGAATGAATATGAAATAGAAACAAAGATTATATGACATTAATGACAATACCCT TGGTCTCAATACCAATATAAACCACACTATAAAACCCCTGTTGGAAGAGTTGGACCTACCATAATGTGAATATTTTCGGC TCGAACAGCATTAGCATTGTCTTCAGAATACCCAAAAAAAAGCGAAAAATGCAGGTTCTCATGGTTCAAATGATTAGGTA GAGCACTGGAGGAGATAAGAGGTTCTTTGTACAATGAGCTCCGGACCTCAGAAGGAGCCAAGCGCCAACAACAAAGATAC TGTGGACCAACGGTGGCATTGACCTTCAACTTCATGGTTGCAGTTGGGATTATCATGGCAAACAAATTGGTAGGAAATTT ATGTTGTGATGCCCTTTTTGGAAGTTCAGCCTATTTGATTAACAGTTCAAGCGCCTTTGGGATAGTTTGTTCATATAACT CTGTTGACAGGTAATGGGAAAAGTTGGCTTCAACTTCCCAATTTTCCTCACATTTGTTCACTACATCACCGCATGGCTTC TACTTGCCATTTTCAAGGCACTCGCGGTGCTTCCCGTCTCTCCTCCATCTAAAACAACTCCATTTTCTTCTATATTTGCA CTTGGAGCTGTTATGGCTTTTGCATCTGGCCTTGCAAACACAAGCCTCAAGTATAACAGGTTGCTCCTCTTGCTTTAACA TAGATTCTAGTTGGATAAAAATTAAATAGCACTTATCGGAGCTTATCAGCTAGAAAAAATACTGAATAAGCTTCAATAAG TGCTCTTTGATCCGCATCCAAACAGGCTCATAATTATATTAAAATACTTGGAACTTTCCTGTTAGCTGACAATCCACCTC ATGCAGTGTTGGTTTCTACCAAATGGCTAAGATTGCTGTTACCCCAACAATTGTTCTAGCAGAGTTCATTCTTTTTGGGA AAACCATTTCTTTTAAAAAGGTCAAGAACCATGCTCCATCCTTTCTTTTTCTTTTTCTCTTTCTTAAATTATTTCAAATA TGTGAAAAAGGACTATTCCATTTCCAGCACCTTCCTTATTTTTCTTATACACTAATCATGTCATTGCAATGATGCAGGTT TTGGCTTTGGCTGTGGTATCAGCAGGTGTAGCAGTTGCAACTGTGACAGATTTAGAGTTCAATTTTTTTGGTGCTATAGT TGCAGTTATATGGATAATCCCAAGTGCCATAAACAAGATTTTATGGTCTACCTTGCAACAACAAGGCAATTGGACAGCTC TCGCGTAAGTACTAGTAGTAACTACCCAATTCCTCCTTGAAAAAATTTAAGTTTTCAATGCTAAGACTCAAGACTTTCTC ATTGTAGATTGATGTGGAAGACCACACCAATCACAGTTTTCTTCCTAGTGGCATTGATGCCATGGATAGATCCACCAGGA ATCTTATCCTTCAAGTGGGATGTAAACAACTCAACTACCATTATGGTATCTGCTCTCCTTGGTTTTCTCTTACAGTGGTC TGGTGCCTTGGCATTGGGGTGAGACTACTTTCCTCTTCCAATTGAAAGATTCAGGGAAAATGATTTATAGTGAGAAAGGA AAAGAAGATATAGAACTAATAAATGTGATAAGAAGAGGGAAAATTAATGAATGTGATAAGAACAGAGAGAAGTAATTGAT TTGATATATTGTAGATATGATAAGAAGATAGAGATAGAGAAAAACAAATGAGGTGTTTTTGGAGTGTCTGCAATATTTGG GTGTGTAAGTATCGTTACTGAAGATTAAGTGATGTACACTATTCATCTATATGATATACAGTAGTACAGAAGATGAAATT TTGGTACATTTTTATTAACTCTTAAAATGTAAATAGTATCCAGGTAATTAGTGGAATACAAACTTTTCCAAACAAATTAT GGGACAGAAATAATATCCCCTAGTCTGCCAGCCCAAGTTGGTGATATGAGTGAGTTAAAATTGTTTGGAAAACTATGTAT CATCTTTTAACACATGCTTCTACTTCTGATAAATATTTTTGCTCCTTGCTGGAGTGAGCTTAGTTAAGATTAGCTAACAT CATTTGATGAATCAATGCAGGGCTACTTCTGCTACAACCCATGTTGTTTTAGGACAGTTTAAGACTTGTGTCATTCTGCT GGGAGGCTATCTATTATTCAAGTCAGATCCTGGGGTTATAAGCATAAGTGGAGCTGTTGTTGCTCTCTCTGGAATGTCAA TTTACACAACATTAAACCTGCAAGAGTCTCAGGAAAGTACAAGCAAGCAGCTTCCAAAGCAAGTTTCACCACCTCCCCAA AAGCCTAAATCAGCTAATGAAGACAGTGAAGATTTGAATGTAAATATTACTTCCGTTGTTGTCTGAGTCATACAATGCAT GTCTGGAAACTCTTCTACAATTGATTCTGGTTTCATAATTGATTATGATCAAAGAGAAGTTGATCCAAACATGCTAATAA TTTGAGTACCACCAGTAAAGCAAAGTTTTTTCTCATGTGATTTGGTTAGGCAATTCAGGTCCAATTCCATTTTGCAGCAA GCCTGTTTTTTTTCCCTAGACATTCCAGCCACACTATTCAATCATTGAAAACTTGTTAAGAATATATCACCATGGCTTTT TTCCTCAAAGTTCCAATCATAGTTTCCTAATGCAAAAAAAGTAGGC
CDS sequence (LotjaGi1g1v0014700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTGGTTGGATTCCCTGTTTGGGGAAGGACGAAAAGTTATTAAAAGGAAGGACAGTGATGCTGGAGAAGCAGGTAG AGCACTGGAGGAGATAAGAGGTTCTTTGTACAATGAGCTCCGGACCTCAGAAGGAGCCAAGCGCCAACAACAAAGATACT GTGGACCAACGGTGGCATTGACCTTCAACTTCATGGTTGCAGTTGGGATTATCATGGCAAACAAATTGGTAATGGGAAAA GTTGGCTTCAACTTCCCAATTTTCCTCACATTTGTTCACTACATCACCGCATGGCTTCTACTTGCCATTTTCAAGGCACT CGCGGTGCTTCCCGTCTCTCCTCCATCTAAAACAACTCCATTTTCTTCTATATTTGCACTTGGAGCTGTTATGGCTTTTG CATCTGGCCTTGCAAACACAAGCCTCAAGTATAACAGTGTTGGTTTCTACCAAATGGCTAAGATTGCTGTTACCCCAACA ATTGTTCTAGCAGAGTTCATTCTTTTTGGGAAAACCATTTCTTTTAAAAAGGTTTTGGCTTTGGCTGTGGTATCAGCAGG TGTAGCAGTTGCAACTGTGACAGATTTAGAGTTCAATTTTTTTGGTGCTATAGTTGCAGTTATATGGATAATCCCAAGTG CCATAAACAAGATTTTATGGTCTACCTTGCAACAACAAGGCAATTGGACAGCTCTCGCATTGATGTGGAAGACCACACCA ATCACAGTTTTCTTCCTAGTGGCATTGATGCCATGGATAGATCCACCAGGAATCTTATCCTTCAAGTGGGATGTAAACAA CTCAACTACCATTATGGTATCTGCTCTCCTTGGTTTTCTCTTACAGTGGTCTGGTGCCTTGGCATTGGGGGCTACTTCTG CTACAACCCATGTTGTTTTAGGACAGTTTAAGACTTGTGTCATTCTGCTGGGAGGCTATCTATTATTCAAGTCAGATCCT GGGGTTATAAGCATAAGTGGAGCTGTTGTTGCTCTCTCTGGAATGTCAATTTACACAACATTAAACCTGCAAGAGTCTCA GGAAAGTACAAGCAAGCAGCTTCCAAAGCAAGTTTCACCACCTCCCCAAAAGCCTAAATCAGCTAATGAAGACAGTGAAG ATTTGAATGTAAATATTACTTCCGTTGTTGTCTGA
Protein sequence (LotjaGi1g1v0014700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGWLDSLFGEGRKVIKRKDSDAGEAGRALEEIRGSLYNELRTSEGAKRQQQRYCGPTVALTFNFMVAVGIIMANKLVMGK VGFNFPIFLTFVHYITAWLLLAIFKALAVLPVSPPSKTTPFSSIFALGAVMAFASGLANTSLKYNSVGFYQMAKIAVTPT IVLAEFILFGKTISFKKVLALAVVSAGVAVATVTDLEFNFFGAIVAVIWIIPSAINKILWSTLQQQGNWTALALMWKTTP ITVFFLVALMPWIDPPGILSFKWDVNNSTTIMVSALLGFLLQWSGALALGATSATTHVVLGQFKTCVILLGGYLLFKSDP GVISISGAVVALSGMSIYTTLNLQESQESTSKQLPKQVSPPPQKPKSANEDSEDLNVNITSVVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 52 | 52 | - | – | |
| PANTHER | 11 | 368 | 358 | 1.8E-202 | – | |
| PANTHER | 11 | 368 | 358 | 1.8E-202 | – | |
| TMHMM | 53 | 72 | 20 | - | – | |
| Phobius | 53 | 73 | 21 | - | – | |
| Pfam | 61 | 338 | 278 | 5.2E-14 | ||
| Phobius | 74 | 84 | 11 | - | – | |
| Phobius | 85 | 112 | 28 | - | – | |
| TMHMM | 87 | 109 | 23 | - | – | |
| SUPERFAMILY | 100 | 194 | 95 | 1.06E-5 | – | |
| Phobius | 113 | 123 | 11 | - | – | |
| TMHMM | 121 | 138 | 18 | - | – | |
| Phobius | 124 | 142 | 19 | - | – | |
| Phobius | 143 | 147 | 5 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 148 | 169 | 22 | - | – | |
| Phobius | 170 | 177 | 8 | - | – | |
| TMHMM | 177 | 194 | 18 | - | – | |
| Phobius | 178 | 194 | 17 | - | – | |
| Phobius | 195 | 199 | 5 | - | – | |
| TMHMM | 198 | 220 | 23 | - | – | |
| Phobius | 200 | 220 | 21 | - | – | |
| Phobius | 221 | 231 | 11 | - | – | |
| Phobius | 232 | 253 | 22 | - | – | |
| TMHMM | 232 | 254 | 23 | - | – | |
| Phobius | 254 | 272 | 19 | - | – | |
| TMHMM | 269 | 291 | 23 | - | – | |
| Phobius | 273 | 291 | 19 | - | – | |
| Phobius | 292 | 297 | 6 | - | – | |
| TMHMM | 298 | 316 | 19 | - | – | |
| Phobius | 298 | 316 | 19 | - | – | |
| Phobius | 317 | 321 | 5 | - | – | |
| TMHMM | 321 | 343 | 23 | - | – | |
| Phobius | 322 | 343 | 22 | - | – | |
| Phobius | 344 | 384 | 41 | - | – | |
| MobiDBLite | 348 | 377 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0014700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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