Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0014700 |
| Transcript ID | LotjaGi1g1v0014700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleotide-sugar transporter family protein; TAIR: AT5G55950.1 Nucleotide/sugar transporter family protein; Swiss-Prot: sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890; TrEMBL-Plants: tr|I3S6Y6|I3S6Y6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0014700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1929629..1931854) extracted from Lotus japonicus Gifu genome v1.2.
TCGAACAGCATTAGCATTGTCTTCAGAATACCCAAAAAAAAGCGAAAAATGCAGGTTCTCATGGTTCAAATGATTAGGTA GAGCACTGGAGGAGATAAGAGGTTCTTTGTACAATGAGCTCCGGACCTCAGAAGGAGCCAAGCGCCAACAACAAAGATAC TGTGGACCAACGGTGGCATTGACCTTCAACTTCATGGTTGCAGTTGGGATTATCATGGCAAACAAATTGGTAGGAAATTT ATGTTGTGATGCCCTTTTTGGAAGTTCAGCCTATTTGATTAACAGTTCAAGCGCCTTTGGGATAGTTTGTTCATATAACT CTGTTGACAGGTAATGGGAAAAGTTGGCTTCAACTTCCCAATTTTCCTCACATTTGTTCACTACATCACCGCATGGCTTC TACTTGCCATTTTCAAGGCACTCGCGGTGCTTCCCGTCTCTCCTCCATCTAAAACAACTCCATTTTCTTCTATATTTGCA CTTGGAGCTGTTATGGCTTTTGCATCTGGCCTTGCAAACACAAGCCTCAAGTATAACAGGTTGCTCCTCTTGCTTTAACA TAGATTCTAGTTGGATAAAAATTAAATAGCACTTATCGGAGCTTATCAGCTAGAAAAAATACTGAATAAGCTTCAATAAG TGCTCTTTGATCCGCATCCAAACAGGCTCATAATTATATTAAAATACTTGGAACTTTCCTGTTAGCTGACAATCCACCTC ATGCAGTGTTGGTTTCTACCAAATGGCTAAGATTGCTGTTACCCCAACAATTGTTCTAGCAGAGTTCATTCTTTTTGGGA AAACCATTTCTTTTAAAAAGGTCAAGAACCATGCTCCATCCTTTCTTTTTCTTTTTCTCTTTCTTAAATTATTTCAAATA TGTGAAAAAGGACTATTCCATTTCCAGCACCTTCCTTATTTTTCTTATACACTAATCATGTCATTGCAATGATGCAGGTT TTGGCTTTGGCTGTGGTATCAGCAGGTGTAGCAGTTGCAACTGTGACAGATTTAGAGTTCAATTTTTTTGGTGCTATAGT TGCAGTTATATGGATAATCCCAAGTGCCATAAACAAGATTTTATGGTCTACCTTGCAACAACAAGGCAATTGGACAGCTC TCGCGTAAGTACTAGTAGTAACTACCCAATTCCTCCTTGAAAAAATTTAAGTTTTCAATGCTAAGACTCAAGACTTTCTC ATTGTAGATTGATGTGGAAGACCACACCAATCACAGTTTTCTTCCTAGTGGCATTGATGCCATGGATAGATCCACCAGGA ATCTTATCCTTCAAGTGGGATGTAAACAACTCAACTACCATTATGGTATCTGCTCTCCTTGGTTTTCTCTTACAGTGGTC TGGTGCCTTGGCATTGGGGTGAGACTACTTTCCTCTTCCAATTGAAAGATTCAGGGAAAATGATTTATAGTGAGAAAGGA AAAGAAGATATAGAACTAATAAATGTGATAAGAAGAGGGAAAATTAATGAATGTGATAAGAACAGAGAGAAGTAATTGAT TTGATATATTGTAGATATGATAAGAAGATAGAGATAGAGAAAAACAAATGAGGTGTTTTTGGAGTGTCTGCAATATTTGG GTGTGTAAGTATCGTTACTGAAGATTAAGTGATGTACACTATTCATCTATATGATATACAGTAGTACAGAAGATGAAATT TTGGTACATTTTTATTAACTCTTAAAATGTAAATAGTATCCAGGTAATTAGTGGAATACAAACTTTTCCAAACAAATTAT GGGACAGAAATAATATCCCCTAGTCTGCCAGCCCAAGTTGGTGATATGAGTGAGTTAAAATTGTTTGGAAAACTATGTAT CATCTTTTAACACATGCTTCTACTTCTGATAAATATTTTTGCTCCTTGCTGGAGTGAGCTTAGTTAAGATTAGCTAACAT CATTTGATGAATCAATGCAGGGCTACTTCTGCTACAACCCATGTTGTTTTAGGACAGTTTAAGACTTGTGTCATTCTGCT GGGAGGCTATCTATTATTCAAGTCAGATCCTGGGGTTATAAGCATAAGTGGAGCTGTTGTTGCTCTCTCTGGAATGTCAA TTTACACAACATTAAACCTGCAAGAGTCTCAGGAAAGTACAAGCAAGCAGCTTCCAAAGCAAGTTTCACCACCTCCCCAA AAGCCTAAATCAGCTAATGAAGACAGTGAAGATTTGAATGTAAATATTACTTCCGTTGTTGTCTGA
CDS sequence (LotjaGi1g1v0014700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCAGTTGGGATTATCATGGCAAACAAATTGGTAATGGGAAAAGTTGGCTTCAACTTCCCAATTTTCCTCACATT TGTTCACTACATCACCGCATGGCTTCTACTTGCCATTTTCAAGGCACTCGCGGTGCTTCCCGTCTCTCCTCCATCTAAAA CAACTCCATTTTCTTCTATATTTGCACTTGGAGCTGTTATGGCTTTTGCATCTGGCCTTGCAAACACAAGCCTCAAGTAT AACAGTGTTGGTTTCTACCAAATGGCTAAGATTGCTGTTACCCCAACAATTGTTCTAGCAGAGTTCATTCTTTTTGGGAA AACCATTTCTTTTAAAAAGGTTTTGGCTTTGGCTGTGGTATCAGCAGGTGTAGCAGTTGCAACTGTGACAGATTTAGAGT TCAATTTTTTTGGTGCTATAGTTGCAGTTATATGGATAATCCCAAGTGCCATAAACAAGATTTTATGGTCTACCTTGCAA CAACAAGGCAATTGGACAGCTCTCGCATTGATGTGGAAGACCACACCAATCACAGTTTTCTTCCTAGTGGCATTGATGCC ATGGATAGATCCACCAGGAATCTTATCCTTCAAGTGGGATGTAAACAACTCAACTACCATTATGGTATCTGCTCTCCTTG GTTTTCTCTTACAGTGGTCTGGTGCCTTGGCATTGGGGGCTACTTCTGCTACAACCCATGTTGTTTTAGGACAGTTTAAG ACTTGTGTCATTCTGCTGGGAGGCTATCTATTATTCAAGTCAGATCCTGGGGTTATAAGCATAAGTGGAGCTGTTGTTGC TCTCTCTGGAATGTCAATTTACACAACATTAAACCTGCAAGAGTCTCAGGAAAGTACAAGCAAGCAGCTTCCAAAGCAAG TTTCACCACCTCCCCAAAAGCCTAAATCAGCTAATGAAGACAGTGAAGATTTGAATGTAAATATTACTTCCGTTGTTGTC TGA
Protein sequence (LotjaGi1g1v0014700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAVGIIMANKLVMGKVGFNFPIFLTFVHYITAWLLLAIFKALAVLPVSPPSKTTPFSSIFALGAVMAFASGLANTSLKY NSVGFYQMAKIAVTPTIVLAEFILFGKTISFKKVLALAVVSAGVAVATVTDLEFNFFGAIVAVIWIIPSAINKILWSTLQ QQGNWTALALMWKTTPITVFFLVALMPWIDPPGILSFKWDVNNSTTIMVSALLGFLLQWSGALALGATSATTHVVLGQFK TCVILLGGYLLFKSDPGVISISGAVVALSGMSIYTTLNLQESQESTSKQLPKQVSPPPQKPKSANEDSEDLNVNITSVVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 304 | 304 | 4.1E-176 | – | |
| PANTHER | 1 | 304 | 304 | 4.1E-176 | – | |
| Pfam | 6 | 274 | 269 | 1.9E-14 | ||
| TMHMM | 17 | 39 | 23 | - | – | |
| Phobius | 23 | 48 | 26 | - | – | |
| SUPERFAMILY | 36 | 130 | 95 | 6.15E-6 | – | |
| Phobius | 49 | 59 | 11 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 60 | 78 | 19 | - | – | |
| Phobius | 79 | 83 | 5 | - | – | |
| TMHMM | 83 | 105 | 23 | - | – | |
| Phobius | 84 | 105 | 22 | - | – | |
| Phobius | 106 | 113 | 8 | - | – | |
| Phobius | 114 | 130 | 17 | - | – | |
| Phobius | 131 | 135 | 5 | - | – | |
| TMHMM | 134 | 156 | 23 | - | – | |
| Phobius | 136 | 156 | 21 | - | – | |
| Phobius | 157 | 167 | 11 | - | – | |
| TMHMM | 168 | 190 | 23 | - | – | |
| Phobius | 168 | 189 | 22 | - | – | |
| Phobius | 190 | 208 | 19 | - | – | |
| TMHMM | 205 | 227 | 23 | - | – | |
| Phobius | 209 | 227 | 19 | - | – | |
| Phobius | 228 | 233 | 6 | - | – | |
| Phobius | 234 | 252 | 19 | - | – | |
| TMHMM | 234 | 252 | 19 | - | – | |
| Phobius | 253 | 257 | 5 | - | – | |
| TMHMM | 257 | 279 | 23 | - | – | |
| Phobius | 258 | 279 | 22 | - | – | |
| Phobius | 280 | 320 | 41 | - | – | |
| MobiDBLite | 284 | 313 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0014700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…