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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0020300 |
| Transcript ID | LotjaGi1g1v0020300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G26640.2 WRKY family transcription factor family protein; Swiss-Prot: sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20; TrEMBL-Plants: tr|I1JJG7|I1JJG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0020300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2496755..2502707) extracted from Lotus japonicus Gifu genome v1.2.
CACACATATCAAACAATTGCAAGACTACTCAACCATGTCACCATCTTGAAAAATCTTTCATAAGCGCTTCATTAACTCAT CTCGTCTATTACAGCCTTATCATCCAGATCCAAAACTTTGTCGTAGATATAGCTATCGCCACCGGAGCGTTTAACCTACG TCTACCTACCGTACAAAGATTAGAAATTACCATGATAATTTTCAAATTTTCATTTCTATTTTTTTTCCATTGGGGTGAGT TGTTGAGAAGTAACAAAAGAACTCAAGAAAAAAAGGGTTTAAAAGACAAGGCAATAGCATAGAACAGAACAGAACAGAGT GTCACACATGAATGAGTTTAAGAGAGAGAGAGAGTGATCCATCTTTGCAAGTCAACTAATAAGTCCCACTCACTCTCTCA GCATCTCTGATAGATCCATCCTTCAAACACAGACAACCAAAAAACAACACCACCCAGAAGAGTGTCAAATGACCCTTTTG CCCTTCCTTCCTTCTCTGCTCTTGCTTTGACTCTCAGCCACAATGGACGCTACTGCCGCCACCACCAGCTCCGGCGAAAC CGATGATCCGAATCGAACAGGGTCGGGCCAGAATTCGAATTCGACCGCGAGGTACAAGCTTTTCTCGCCGGCGAAGCTTC CGATCTCGAGGTCGCCGTGCATCACCATCCCTCCGGGGCTCAGTCCGTCGTCGTTTCTCGAGTCCCCCGTTCTTCTTTCC AACATGAAGGTGAGCGAGTCTTCTCTTTGCTTCTTCATCTTCTTTGGCTCCAATTGAAGTGTTTGGTTTGGGTGAATTTT GAGGGGAAATTTTCAAAGGGTTTTGGGTTTTCTGAGAGAAAGTGAAATAGAAAATGGGAATAAAATGTGGGTATGAATTT GTTTGTTGAATGCTGCTATTGTTGTTTGCTAGTTCATTTTGGTCAAAGGTGGTGCTAGTTGTGTGTGGAGTATAAAAAAT TTGTTATTTTCACTGTGATTTTCTTGCTATTTCTCAGAAACCAAACAGCTCCTATCTGGGCTGGGCTCAAATCTTATCAT TTTGGTAGGAATATTTGATGACATCAGGAAATGACTTAAGATGCTGTGTTTGTTTCATAAATTAAAAAATTCAGATTCTT ATATGCTTGTTTGTTTGTTTTGTCTCGTGGTGAATTGATTGTTTGTTTATAGCTGGAACTTTCCATGTTTTGATCCTTCA CTTGGCACATTTCATGTATGGGATGATTAGGTTCTGATGCTTGATCTTAAAGAGTTTTTGTATTGGCTGCTTTTTGGTTA ATGGGGTGTTCTGTTGGGATATGACTTCAGCTGAGGATCAAACGACATTCTCCTATCAATATTTTAATGCCAGTGTTGTT TTTTCACATTATGAATCTTCCTTTTTCGTTGATGCTTTCCCTTTTTGTTTGTTTTTTATTTTATTTAACGGTGTAGCAGA GTTCACAGTACAAAAGAATCAATGCATTACCACAAGTTATGTGTGCTATGAGCCTATGAGAATAATATAAAAGAATGTCA GAAAGATTGTGGGTTTAGATTTTTTTTGAAAAGACTTGATTTATGCTACATTCAATGGGAATGGCTTTTCTAAATTATGA TTGATTGCTTATATATCTAACTTCTTCATATTATAATGTACTATGTTATCTCTGTCATAAGGACCCACCTAAACAATGAA ATATAATCAGGAGAAAATGAAGAACTTTGCTCATGCTCAATAGTAGGACTAGGGGCCGCTTGCGTCGCTGGCCACTAAAT TTGTTCAGTTGCTTGGTTTACCTAGACGATTATATATGTGCTCTCTTTCCATTGTTATTACTGATTTCGTTGGTCGATTG ATTGCTGTTTGGGGCCTTCAGGTTTGCAGGAACTTAGAAACCTTCTGTTGTTTTGTTCTTTCCTCTTCTCTTTATTTTGT TTCTTTGAGAAATAAATTTGTTTCCTGTATGTTTTTGTGCATTGGAATTTATAAATTTTCATTTCATTCGGCAATTGTTG CTCATAAAGCATTGCAGTTTAAGTATTATTTTTTCCCATGCTTTACAGGTTGAGCCTTCACCCACTACAGGATCCTTTGC TAAGCTTTTCCAAACAGTACATGGTTCTACAGCTTCTAATGCGTCTGTTACATTTCCTGTAACCACTGTATGCTTCAATA CCAGTGCTGTTGATGAAGGAAAATCGAGCTTCTTTGAGTTTAAACCACACAATAGATCAAATATGGTAATCAATTATTAG TTGATGTTCGTAACACTTTTATGAATATAACTTCATATTCTGTAAACTTGAGCTTCAGTTTTGTGTTTATTTCTCCTGTG ATTTTCTTGATTTAAACCTGTGCGCGAAGTTGGCACACATCACTTTGTCACCCAAGATAAAATCAATCCGTGAAGTCTTA TAAGTTAACCATTTTATTCTGGGGTTGCATTGTTAGATGGAAATATTGGGTTTTCATGTTTCATGTTTTGATTTATATTT TTTTGAGGACTAGTAATTGCTTAGAACTTACCAATGCTATTTGTTCATGTTAAGGCTCCTGCTGACTTCAACAAGCATGT AAATGAACAGTCTACTCATGTAGAAGGTCCAGGAAAAGCTCAGCCATTAACCACCTCTCCATTAGTGGAAAGTGAGTTAG CGGTTCTATCTAATGAGTTAAGCCTATCATCACCTGGTCAGATGGTTAGTTCTGGGGCTAGTGCTCCTGTTGATTTCAAT TCGGATGAATTTAACCACAAATGCACTGGGCTTCAAACATCACATGCTGACGTTAGAGGCAGTGGCCTTTTGGTTGCAGC CGAAAAAGTAACGAATGATGGATATAATTGGCGAAAATATGGGCAGAAACTTGTTAAAGGAAGTGAATTTCCGCGCAGCT ATTACAAATGTACACACCCTAACTGTGAAGTCAAAAAACTTTTTGAACGCTCTCATGATGGTCAGATCACTGAGATAGTT TACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCAGTCGGTCCTCTGCTGGTTCTATTATGTCTATGCAAGGAGA AAGATCTGATATGACTTCTTCAGCTGGCCGAGATGGTAATATCTGTCAGATTCTTCTCGTTGTTTCCATTTTATTCTTAC TTATTGCAAATAAGTAAGCTGGCTTCTTTTTCTTATAATACATGAATTGTAGACAAAGCATCCAATGTGTATGGTCATGT GTCTCATGAAGCTGAGCCCAATAGTACTCCCGAGCTATCACCTGTAGCAACTAATGATGACAGTCAAGAATGTGCTGGAT TTGTGTCGAACAGGACAAATGAGGAGGTTGATGATGATGATCCTTTCCCCAAGCGAAGGTATAATAATTTTAGCCAAAGC TCTAGGTTTTCTGCAGCATATGTGCTTACTTACTGACCATGAGTTTTTTTTTTTTTTTTCATTGAGTAGAAAAATGGAAC TTGGAAATGTTGACATTATCCCTATTGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTGCAAACTCTGAGTGAAGTGGAT ATATTGGATGATGGGTACCGCTGGCGTAAATATGGGCAGAAGGTGGTGAGGGGAAATCCGAACCCAAGGTATGTCCTCAC ATAAAACTAGGAAATAGAAGCTAAAAGTAATAAATTCCAATTGAATATAATTTATTCCTTCCTCAAACAATTTTTTTCAT GTATATTGTTGAGCTTTTGCTCTTGTGCTTAGTCTCTTGACAAGAATTGAAGTGGGGAATCAACTTGATATGATCTTTTA TTTCCTCAAACTTCCTGATCATATTACCTTACAATCTGTTGCTTTTGTTCTGATTTAGCATTGGGTATGCATATGTATGT ATGTATGCCAAAGAAAGGAAGAAATTTTGCTTATACATATTGAATTAGTAAAAGCATGAGATAAGGAATACCTATTATTT TCATTATTACTTTTGTTGAGGTTAGGGATACTGAGATGGACATGTTACATGTTGAATACTAATGTTTCGTGATTTCAAGA ATAGCAATGGAAATTGGTTTTGGACGTTTGCTAGATTCTGAAAATGAAAGAATTATCTATAGGAATTTCATTTGGATGTC TTCTGGAAGCTGTTCATTGAGAAGTTTTTTTTTTATTGGTTTTCTGACTGGTCAAATGTGAGTTGTAATTGGTGTTCAGA ATGTTCATGAGATTGATCTTATAAAGGAACTAGAATGAAAAAATATATAATGGCTTAGATACAAATTGATTAAAAGAGCA TGTCTGCTAAAAATTTGCAAAGGAACATGGTGATAAATTCAAATGGCATTAACTATTACTAGATATGAGATTTTTTTTAG GAATAGATGCCCTTCCTTGAGGTAAGGAGTGAATATTAATATTGCAAGCCAAGTTATAAGGAAATTTGATTTTCATGTAT ATTGATGGTGCAACCTTTTTTCTTTTGTTTTCCATTTTATTTCTGAGGAAATTAGAACTTCCATGTTCCATCCTGTTAGT TTCAATTATTGACTGGTGTTGCTGACCCCAATGTTACCATTAAGCCTGCTGTTAACATCTTCTGAAGTTATTTGGCACTT ATGAGCAAGTAGTTATAAGTTGGGGTATATTCACCTGAGTTTTGTTGTCATAGTTGTCCTAGGATGTGCCTGTACCACGA TTCATGCATTTCAGCTCTTTCTATTTCATGGAGACAAATCAGACAATCGTTAATATAAATGCCAATACTGTGGTCTCAAA AACCAAAATGTTACTTCTTATTCTTCCTCTGTAATATGATTCTGTTTTTAGCTTTAGGAAGAGCTTGAAAGCATTGAATT CAAATAAAATATTTGGACTTATGACCTTGATGGGTAGGATTTGTAATATGTTAATTATCCATGGTTGTGATCTTAACTCA CTGCGATTAGATATGATAATTAACTTCGAACTTTTTGTGAGTCTTGTTCTTATCATGCTTCTTATGCAGGAGCTATTACA AGTGCACAAATGCTGGTTGCCCTGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCGAAAGCGGTGATAACTACATAT GAGGGTAAACACAACCATGATGTTCCTGCTGCAAGGAATAGCAGCCATGACATGGTAGGACATGTAGCTGCTGGTGGAAA TACAAGAATCAAGTTAGAACAAAGTGATACTATTAGCCTTGACCTTGGTATGGGCATTACTACCTCAGCGGCTGAAAACC GATCAAATGGGCAAGGGAAAATGGTGCTCTCTGAATTTGGACACAGTCAAAATACTCACCCTAGCACTTCCAATTTCAAG TTTGTTCATACTAGCCCAGCTCCAGGATACTATGGTGTTCTAAATAATAGCTCAAGTTCCTATGGTTCTAGAGAAAATAG GAGTGATGGTCCATCTTTAAACCATTCCTCATATCCTTGCTCACAGAACATGGGAAGATTACTAATGGGTCCAAGAAATT GTTAACTAACTACAAAAAATAAAAATAAATATTTATGAGTAGCGCTCTGGTTTCTTCTTTTTGGCGGGTATAGCTTCAAA GGTGAAAAAAAAAGCTCATTTTCTGTAAGAAAATGCAGATAGTTCTTTCATGTCTATATCACTATTTATGAGCTGCTGTG TAGGAGTGAAGCAGCTCCGGGTTGACTTTATATGTAATTGTTGTTTGTAATTGTATAATTATATCCAAATTCTTCTGTAT AAATATGAGGCCAATATCAAAGCAGCTTCTGCAAAAATGTTGTAAAAGTGTTTGAATGAAACTATTTAAGTAGCATTTAG CCTTTTACTGAACTCTGGCATTGATGTCCCCACTGCATTGATGTCCTTTTTGGCTATAGTAAAATTGGATGGATATGCCA TGAATTTTTCCTTATCAGATTTTCTCACACTATATTGTCTGCATTGAACTAAAATATGAATGGAAAAAGATTCATAGATG TCCGCCACCGGACAAACATTCAGAGTGTGAAGA
CDS sequence (LotjaGi1g1v0020300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGCTACTGCCGCCACCACCAGCTCCGGCGAAACCGATGATCCGAATCGAACAGGGTCGGGCCAGAATTCGAATTC GACCGCGAGGTACAAGCTTTTCTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACCATCCCTCCGGGGCTCA GTCCGTCGTCGTTTCTCGAGTCCCCCGTTCTTCTTTCCAACATGAAGGTTGAGCCTTCACCCACTACAGGATCCTTTGCT AAGCTTTTCCAAACAGTACATGGTTCTACAGCTTCTAATGCGTCTGTTACATTTCCTGTAACCACTGTATGCTTCAATAC CAGTGCTGTTGATGAAGGAAAATCGAGCTTCTTTGAGTTTAAACCACACAATAGATCAAATATGGCTCCTGCTGACTTCA ACAAGCATGTAAATGAACAGTCTACTCATGTAGAAGGTCCAGGAAAAGCTCAGCCATTAACCACCTCTCCATTAGTGGAA AGTGAGTTAGCGGTTCTATCTAATGAGTTAAGCCTATCATCACCTGGTCAGATGGTTAGTTCTGGGGCTAGTGCTCCTGT TGATTTCAATTCGGATGAATTTAACCACAAATGCACTGGGCTTCAAACATCACATGCTGACGTTAGAGGCAGTGGCCTTT TGGTTGCAGCCGAAAAAGTAACGAATGATGGATATAATTGGCGAAAATATGGGCAGAAACTTGTTAAAGGAAGTGAATTT CCGCGCAGCTATTACAAATGTACACACCCTAACTGTGAAGTCAAAAAACTTTTTGAACGCTCTCATGATGGTCAGATCAC TGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCAGTCGGTCCTCTGCTGGTTCTATTATGTCTA TGCAAGGAGAAAGATCTGATATGACTTCTTCAGCTGGCCGAGATGACAAAGCATCCAATGTGTATGGTCATGTGTCTCAT GAAGCTGAGCCCAATAGTACTCCCGAGCTATCACCTGTAGCAACTAATGATGACAGTCAAGAATGTGCTGGATTTGTGTC GAACAGGACAAATGAGGAGGTTGATGATGATGATCCTTTCCCCAAGCGAAGAAAAATGGAACTTGGAAATGTTGACATTA TCCCTATTGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTGCAAACTCTGAGTGAAGTGGATATATTGGATGATGGGTAC CGCTGGCGTAAATATGGGCAGAAGGTGGTGAGGGGAAATCCGAACCCAAGGAGCTATTACAAGTGCACAAATGCTGGTTG CCCTGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCGAAAGCGGTGATAACTACATATGAGGGTAAACACAACCATG ATGTTCCTGCTGCAAGGAATAGCAGCCATGACATGGTAGGACATGTAGCTGCTGGTGGAAATACAAGAATCAAGTTAGAA CAAAGTGATACTATTAGCCTTGACCTTGGTATGGGCATTACTACCTCAGCGGCTGAAAACCGATCAAATGGGCAAGGGAA AATGGTGCTCTCTGAATTTGGACACAGTCAAAATACTCACCCTAGCACTTCCAATTTCAAGTTTGTTCATACTAGCCCAG CTCCAGGATACTATGGTGTTCTAAATAATAGCTCAAGTTCCTATGGTTCTAGAGAAAATAGGAGTGATGGTCCATCTTTA AACCATTCCTCATATCCTTGCTCACAGAACATGGGAAGATTACTAATGGGTCCAAGAAATTGTTAA
Protein sequence (LotjaGi1g1v0020300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDATAATTSSGETDDPNRTGSGQNSNSTARYKLFSPAKLPISRSPCITIPPGLSPSSFLESPVLLSNMKVEPSPTTGSFA KLFQTVHGSTASNASVTFPVTTVCFNTSAVDEGKSSFFEFKPHNRSNMAPADFNKHVNEQSTHVEGPGKAQPLTTSPLVE SELAVLSNELSLSSPGQMVSSGASAPVDFNSDEFNHKCTGLQTSHADVRGSGLLVAAEKVTNDGYNWRKYGQKLVKGSEF PRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSSRSSAGSIMSMQGERSDMTSSAGRDDKASNVYGHVSH EAEPNSTPELSPVATNDDSQECAGFVSNRTNEEVDDDDPFPKRRKMELGNVDIIPIVKPIREPRVVVQTLSEVDILDDGY RWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMVGHVAAGGNTRIKLE QSDTISLDLGMGITTSAAENRSNGQGKMVLSEFGHSQNTHPSTSNFKFVHTSPAPGYYGVLNNSSSSYGSRENRSDGPSL NHSSYPCSQNMGRLLMGPRNC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 22 | 570 | 549 | 5.4E-272 | – | |
| PANTHER | 22 | 570 | 549 | 5.4E-272 | – | |
| Gene3D | 211 | 281 | 71 | 5.0E-28 | ||
| ProSiteProfiles | 216 | 280 | 65 | 24.088 | ||
| SUPERFAMILY | 218 | 280 | 63 | 3.14E-25 | ||
| SMART | 221 | 279 | 59 | 1.9E-33 | ||
| Pfam | 222 | 278 | 57 | 8.6E-25 | ||
| MobiDBLite | 271 | 363 | 93 | - | – | |
| MobiDBLite | 280 | 309 | 30 | - | – | |
| MobiDBLite | 324 | 347 | 24 | - | – | |
| Gene3D | 382 | 457 | 76 | 3.2E-35 | ||
| SUPERFAMILY | 388 | 456 | 69 | 2.09E-29 | ||
| ProSiteProfiles | 391 | 456 | 66 | 38.825 | ||
| SMART | 396 | 455 | 60 | 3.1E-39 | ||
| Pfam | 397 | 454 | 58 | 8.0E-26 | ||
| MobiDBLite | 545 | 566 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0020300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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