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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0022800 |
| Transcript ID | LotjaGi1g1v0022800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division FtsZ-like protein; TAIR: AT5G55280.1 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1; Swiss-Prot: sp|Q42545|FTSZ1_ARATH Cell division protein FtsZ homolog 1, chloroplastic; TrEMBL-Plants: tr|I3SGZ6|I3SGZ6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0022800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2777486..2781069) extracted from Lotus japonicus Gifu genome v1.2.
AGTAAAGCTATCTATTTTCATTTTCCTAACCAAAAAGATAGAACCCTAACCATAGAGATAATAAATAAACCCTCTGGAGA AAGAACTTGGTAAGGGAAAAATGGCCACACTTCCTTCCCTCACAAACCCAAATGAGCTTCTCTCATCTTCCTCCTTCTAC CACAATGCATTATCCACTTCACCCTCTGTCTCTCTCAACACCACCAGAATTACCAGAGTCGCTAGCACCCCACAACGCCT CACTCGTCGTTTCCGGTCGGTTCGATGTTCCTTCGCCTCAGTAGAAAACGCCAAGATTAAGGTTGTCGGAATCGGAGGTG GTGGCAACAATGCCGTCAACCGCATGATTGGTAGTGGTTTGCAGGTGGGGTTCCAATTTGGGTAAACCCAGTTTGGGATT TCTTCAATTTTGTAGTACTGCTTTTGTGAATTCTATGTTGCTGTAGTAACTATGTTGTTGCTTGTGGAGACACTGTTGTT GTATTGTGGTTACACATGTTGGATATTGTGCTTGTTTACTCCAGCTGAACTATGCACTAGGCTAGTCTTTGTGTTTTGCT GCAACTATGGGAATAATGATGTTGAATTCTGCTACTTTTTCAATCAGGGTGTAGACTTTTATGCAATAAATACTGATGCT CAAGCGCTGGTACATTCTGTTGCTGAGAATCCTATTAAAATCGGAGAGCTTCTGACTCGCGGATTAGGTCAGGCACTCTC CTTGCGTGTCTCGTTGCCTTCGACGTGATTTATTTGTGTGGCATCACTCTAGTTTCCTTGCTAATAGCATGTTTAGTTCT GCCTATTTTTTCACCCCAGAAGCTACCTACTTAAGCTTCTGACCAGAATTGATTTTTCCTTAGAAGAATTTTTACACATG TATTTAGTTTAGTGAGATATTGGAGGGTGACCTTTGATTCAAATTGCTTGATAGAGATGCAGGTACTGGTGGGAATCCAC TTTTGGGAGAACAAGCTGCGGAGGAATCAAGAGAAGCTATTGCGGATGCCCTTAAAGGGTCAGATTTGGTGTTCATAACA GCTGGGATGGGTGGTGGCACAGGGTCTGGTGCTGCCCCAGTTGTGGCTCAAATATCAAAAGAGGCAGGTTACTTGACTGT AGGTGTGGTTACCTATCCCTTCAGTTTTGAAGGACGTAAGAGATCCTTGCAGGCAGGTGTCCTTTCTTTCCTTGTTTTTT TTAGTATTACTCTTTATATCATGTTGAAAAAAAGAATATTCATTCATATTTTTTTTCAGGCACTTGAAGCCATTGAAAAA CTGCAGAAAAATGTTGACACACTTATAGTGATTCCAAATGACCGTCTGCTTGACATAGCTGATGAGCAGATGCCCCTTCA GGATGCTTTCCGTCTTGCGGATGATGTCTTACGCCAAGGAGTACAGGGAATATCAGACATTATAACAGTTAGTTGCTTAG CAATCAATTTATTCATACCTTTTTCTTATCACTACAGTGCTATTAGAATTCCTAGTTGATCCTGCTAGATAGGTTACTTG CAAAAAGAAAAGAAAAACAAAACATGGGGTGCTTGAACCATTCTCCAACTCCTTTCTCGTTGATTCTTGAGTGGTCACTC TTCATAACAGGGCATGTATTTATATCAAGGGTTTATTCATGTAATTCTTTTAATCTTTTTTCTATATCATAAGAGCTGTT TGTGACTTATTCCAGATACCTGGACTTGTAAATGTGGATTTTGCTGATGTAAAAGCTGTGATGAAAGACTCTGGTACTGC AATGCTTGGAGTAGGTGTTTCCTCCGGTAAAAACCGAGCAGAAGAAGCAGCAGAACAGGCTACTTTGGCTCCTTTAATTG GATCATCTATTCAATCAGCCACTGGGGTAGTATATAACATAACTGGAGGAAAGGACATAACTCTGCAGGAAGTGAACAGG GTGTCTCAGGTACGTAAAGATTTTATCAGCACTTGCTTAAGGAACATACTGTTACATCTCTTCTTGTTTGTTTCAAACAT CTTATTTTTACTTTCCAAACTAGTCCTGTAATGTTACTGTTACTGGATTTAAATGTTTAAAACTTAAAGTAGAGTGCTGT AATATTTGATTGTGTTGATATTTTTGCATTCATTATACTATAATATGTTCAAAAAGTTGAAGTGTTCCTCAAGATTAAGA TTCAGTAAAATTTTAGCAAGCCATCCAAATCCTCCCCTGAAGAGAAGAAAAGGAATTTAGACTTAGCGGATGTATCACGT GAGGGGACTTGTTATCGTGAGAGATGAGAATAAGATTATACATATAATCCTGTTAATTGTCTTTTTTTTTCTCTCTCTTC AGTTTGTGCTTCATATCAATATATTATGGTTTTTCTTTTTGCTTTTGATGGATAATAAGCTAAGGCTACTTGTGGTTAGC ACTGGTTTTGCTTCTACATTTACTGCCCTTAACATGAGTAATTTTTATAGGTGGTGACTAGTTTGGCTGATCCTTCTGCC AACATTATATTTGGGGCTGTTGTTGATGATCGTTACACTGGGGAGATTCATGTTACCATCATTGCTACCGGCTTCTCGCA GTCTTTCCAGAAGAAGCTGCTAACAGATCCAAGGGCTGCAAAGCTGCTTGACAAAGTGGCTGAGAGCCAAGAAAGTAAGG CAATGCCCCCTCCTATCAAGTCCTCGGTAGAACCTAGAGCATCTCCACGGAAGCTCTTTTTTTAGTTGCTCAATTCTTTT ACCCTTTTAACTTTTCTAATTATCATATATTGCAGTCATTCAGCTGTGTAATGATCTTGAAGCTTGATTGATTTTTTGAG ATATCATTTACTCATGGTTTGTGTAACCATTCAGCTTAAGTGTATGTAGCTTAAACAATTTTTGTTCATGAAATGGATGT GTTTGTATTTATCTACTCTGCCCCAATGATTTCCACCAAGTAACACAATTAGCTTTGTCACATCATCATTTCTTACAACT TTACCTCAGTAACATATAACATTGCTGTTGTTTTGTGCAACATATAGCTAGAGCAATGTCTTAAACTCCAGCCAGTTACA ATACAAAGCCTTCCATTTTTTCCATGTACATACAAAGCCTTTCATTACACTACATATAAGAGTCAAACACACCATATAAA CACTTACACATGTCCATTACATTACAAACTCAACAAATTGCACGCCATTGACAAAGCACCAAGAGAAATCAGGAAACTAG GTTATGATGTTTCAGTGCATACATACAGAGACGTAGACAAAAACAGAAGCTTGACGAGTTAGGCATTTTATCATTACAGA TATTTGACCAACAGCCCAATGACAACAACCAAAACCACTATGCCAATCACTGATAAAAGCATGCACAAGCAGGAGCAACC ACCGTTGGTTCGTTTATTTAAAACTGCCAAGTTCTTCTGCACACGCTGTTTTCACAGAAACATAAACGATAAGCTGTTAG TTGGTACAAATGTCAACATTCAACAAATTAACATAATTTAACTTTGATAAAACTAAATAAGAGTATCGGTCCAGATAGAA GTTACTATAAGAATATTACCCTAAGCCGAGAATCTGTGACATCTACATGTTGGTCCAAGTCATC
CDS sequence (LotjaGi1g1v0022800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACACTTCCTTCCCTCACAAACCCAAATGAGCTTCTCTCATCTTCCTCCTTCTACCACAATGCATTATCCACTTC ACCCTCTGTCTCTCTCAACACCACCAGAATTACCAGAGTCGCTAGCACCCCACAACGCCTCACTCGTCGTTTCCGGTCGG TTCGATGTTCCTTCGCCTCAGTAGAAAACGCCAAGATTAAGGTTGTCGGAATCGGAGGTGGTGGCAACAATGCCGTCAAC CGCATGATTGGTAGTGGTTTGCAGGGTGTAGACTTTTATGCAATAAATACTGATGCTCAAGCGCTGGTACATTCTGTTGC TGAGAATCCTATTAAAATCGGAGAGCTTCTGACTCGCGGATTAGGTACTGGTGGGAATCCACTTTTGGGAGAACAAGCTG CGGAGGAATCAAGAGAAGCTATTGCGGATGCCCTTAAAGGGTCAGATTTGGTGTTCATAACAGCTGGGATGGGTGGTGGC ACAGGGTCTGGTGCTGCCCCAGTTGTGGCTCAAATATCAAAAGAGGCAGGTTACTTGACTGTAGGTGTGGTTACCTATCC CTTCAGTTTTGAAGGACGTAAGAGATCCTTGCAGGCACTTGAAGCCATTGAAAAACTGCAGAAAAATGTTGACACACTTA TAGTGATTCCAAATGACCGTCTGCTTGACATAGCTGATGAGCAGATGCCCCTTCAGGATGCTTTCCGTCTTGCGGATGAT GTCTTACGCCAAGGAGTACAGGGAATATCAGACATTATAACAATACCTGGACTTGTAAATGTGGATTTTGCTGATGTAAA AGCTGTGATGAAAGACTCTGGTACTGCAATGCTTGGAGTAGGTGTTTCCTCCGGTAAAAACCGAGCAGAAGAAGCAGCAG AACAGGCTACTTTGGCTCCTTTAATTGGATCATCTATTCAATCAGCCACTGGGGTAGTATATAACATAACTGGAGGAAAG GACATAACTCTGCAGGAAGTGAACAGGGTGTCTCAGGTGGTGACTAGTTTGGCTGATCCTTCTGCCAACATTATATTTGG GGCTGTTGTTGATGATCGTTACACTGGGGAGATTCATGTTACCATCATTGCTACCGGCTTCTCGCAGTCTTTCCAGAAGA AGCTGCTAACAGATCCAAGGGCTGCAAAGCTGCTTGACAAAGTGGCTGAGAGCCAAGAAAGTAAGGCAATGCCCCCTCCT ATCAAGTCCTCGGTAGAACCTAGAGCATCTCCACGGAAGCTCTTTTTTTAG
Protein sequence (LotjaGi1g1v0022800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLPSLTNPNELLSSSSFYHNALSTSPSVSLNTTRITRVASTPQRLTRRFRSVRCSFASVENAKIKVVGIGGGGNNAVN RMIGSGLQGVDFYAINTDAQALVHSVAENPIKIGELLTRGLGTGGNPLLGEQAAEESREAIADALKGSDLVFITAGMGGG TGSGAAPVVAQISKEAGYLTVGVVTYPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQMPLQDAFRLADD VLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSGKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYTGEIHVTIIATGFSQSFQKKLLTDPRAAKLLDKVAESQESKAMPPP IKSSVEPRASPRKLFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 416 | 411 | 1.2E-258 | – | |
| PANTHER | 6 | 416 | 411 | 1.2E-258 | – | |
| TIGRFAM | 60 | 377 | 318 | 9.2E-128 | ||
| Hamap | 61 | 410 | 350 | 36.85 | ||
| Gene3D | 62 | 368 | 307 | 2.8E-119 | ||
| SUPERFAMILY | 64 | 260 | 197 | 9.94E-71 | ||
| Pfam | 65 | 225 | 161 | 7.2E-40 | ||
| SMART | 65 | 257 | 193 | 2.9E-110 | ||
| CDD | 78 | 366 | 289 | 1.19722E-151 | ||
| ProSitePatterns | 96 | 130 | 35 | - | ||
| ProSitePatterns | 149 | 170 | 22 | - | ||
| PRINTS | 150 | 170 | 21 | 2.1E-50 | ||
| ProSitePatterns | 158 | 164 | 7 | - | ||
| PRINTS | 178 | 199 | 22 | 2.1E-50 | ||
| PRINTS | 241 | 263 | 23 | 2.1E-50 | ||
| SUPERFAMILY | 259 | 375 | 117 | 1.17E-39 | ||
| SMART | 259 | 376 | 118 | 4.6E-44 | ||
| PRINTS | 264 | 285 | 22 | 2.1E-50 | ||
| Pfam | 274 | 367 | 94 | 5.1E-30 | ||
| MobiDBLite | 389 | 416 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi1g1v0022800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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