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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR018316
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 74 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.992s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0058329.1
n.a. gamma-tubulin [Vigna angularis] gi|187761602|dbj|BAG31940.1| chr0 19186792 19187126 +
2 domain predictions
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Lj0g3v0058349.1
n.a. gamma-tubulin [Vigna angularis] gi|187761602|dbj|BAG31940.1| chr0 19187111 19187332 +
3 domain predictions
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Lj0g3v0212479.1
n.a. PREDICTED: tubulin beta-2 chain-like [Glycine max] gi|356504309|ref|XP_003520939.1| chr0 107231785 107234164 -
4 domain predictions
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Lj0g3v0257789.1
n.a. PREDICTED: tubulin gamma-1 chain-like isoform X1 [Cicer arietinum] gi|502113903|ref|XP_004494797.1| chr0 133827814 133832009 +
4 domain predictions
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Lj1g3v2095980.1
n.a. Tubulin alpha-7 chain [Medicago truncatula] gi|357466771|ref|XP_003603670.1| chr1 25043058 25044993 -
4 domain predictions
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Lj1g3v3244640.1
n.a. PREDICTED: tubulin gamma-1 chain-like isoform X1 [Cicer arietinum] gi|502113903|ref|XP_004494797.1| chr1 36732302 36735148 -
4 domain predictions
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Lj1g3v3244640.2
n.a. Tubulin gamma-1 chain protein [Medicago truncatula] gi|357512519|ref|XP_003626548.1| chr1 36732302 36735461 -
4 domain predictions
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Lj1g3v3975290.1
n.a. PREDICTED: tubulin alpha-1 chain [Vitis vinifera] gi|225435758|ref|XP_002285721.1| chr1 46797930 46801574 +
4 domain predictions
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Lj1g3v3975300.1
n.a. alpha-tubulin, partial [Populus alba] gi|403329628|gb|AFR42124.1| chr1 46801074 46801782 +
3 domain predictions
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Lj1g3v4093380.1
n.a. PREDICTED: tubulin beta-1 chain-like [Glycine max] gi|356571899|ref|XP_003554108.1| chr1 48477799 48480580 +
4 domain predictions
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Lj1g3v4717260.1
n.a. PREDICTED: cell division protein ftsZ homolog 2-1, chloroplastic-like [Glycine max] gi|356572556|ref|XP_003554434.1| chr1 56228399 56234759 +
3 domain predictions
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Lj2g3v0661570.1
n.a. beta-tubulin 16 [Salix arbutifolia] gi|460240332|gb|AGH08237.1| chr2 10708898 10710777 -
4 domain predictions
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Lj2g3v0661580.1
n.a. RecName: Full=Tubulin beta-2 chain; AltName: Full=Beta-2-tubulingi|4415992|gb|AAD20179.1| beta-tubulin 2 [Eleusine indica] gi|8928425|sp|Q9ZPN9.1|TBB2_ELEIN chr2 10709141 10709800 -
4 domain predictions
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Lj2g3v3088170.1
n.a. gamma-tubulin [Vigna angularis] gi|187761602|dbj|BAG31940.1| chr2 39741848 39745441 -
2 domain predictions
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Lj2g3v3224250.1
n.a. PREDICTED: cell division protein ftsZ homolog 1, chloroplastic-like [Glycine max] gi|356501582|ref|XP_003519603.1| chr2 41234052 41237585 -
3 domain predictions
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Lj4g3v0286260.1
n.a. PREDICTED: tubulin beta-3 chain-like [Cicer arietinum] gi|502141952|ref|XP_004504719.1| chr4 3513234 3518963 +
4 domain predictions
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Lj4g3v0286270.1
n.a. n.a. chr4 3518065 3518520 -
3 domain predictions
 –
Lj4g3v0286270.2
n.a. n.a. chr4 3518065 3518963 -
3 domain predictions
 –
Lj4g3v0506840.1
n.a. 3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 1 [Theobroma cacao] gi|508780785|gb|EOY28041.1| chr4 8465272 8468736 +
2 domain predictions
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Lj4g3v2604350.1
n.a. RecName: Full=Tubulin alpha-3 chain; AltName: Full=Alpha-3-tubulingi|2511535|gb|AAC05719.1| alpha-tubulin 3 [Eleusine indica] gi|6094431|sp|O22349.1|TBA3_ELEIN chr4 35169577 35172212 -
4 domain predictions
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Lj4g3v2951260.1
n.a. PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502139309|ref|XP_004503723.1| chr4 39119527 39122014 -
4 domain predictions
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Lj4g3v2951260.2
n.a. PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502139309|ref|XP_004503723.1| chr4 39119527 39123221 -
4 domain predictions
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Lj5g3v2013620.1
n.a. PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502119269|ref|XP_004496560.1| chr5 28301676 28304250 -
4 domain predictions
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Lj5g3v2065190.1
n.a. PREDICTED: tubulin alpha chain-like [Cicer arietinum] gi|502120143|ref|XP_004496862.1| chr5 29924004 29927705 -
4 domain predictions
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Lj6g3v0818970.1
n.a. PREDICTED: cell division protein ftsZ homolog 1, chloroplastic-like [Glycine max] gi|356567042|ref|XP_003551732.1| chr6 8254322 8256958 -
3 domain predictions
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Lj6g3v1629640.1
n.a. tubulin beta chain [Lotus japonicus] gi|244539475|dbj|BAH82659.1| chr6 18371425 18374052 +
4 domain predictions
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LotjaGi1g1v0022800.1
n.a. Cell division FtsZ-like protein; TAIR: AT5G55280.1 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1; Swiss-Prot: sp|Q42545|FTSZ1_ARATH Cell division protein FtsZ homolog 1, chloroplastic; TrEMBL-Plants: tr|I3SGZ6|I3SGZ6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0022800 LjG1.1_chr1 2777486 2781069 +
2 domain predictions
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LotjaGi1g1v0022800.2
n.a. Cell division FtsZ-like protein; TAIR: AT5G55280.1 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1; Swiss-Prot: sp|Q42545|FTSZ1_ARATH Cell division protein FtsZ homolog 1, chloroplastic; TrEMBL-Plants: tr|I3SGZ6|I3SGZ6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0022800 LjG1.1_chr1 2777486 2781558 +
2 domain predictions
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LotjaGi1g1v0022800.3
n.a. Cell division FtsZ-like protein; TAIR: AT5G55280.1 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1; Swiss-Prot: sp|Q42545|FTSZ1_ARATH Cell division protein FtsZ homolog 1, chloroplastic; TrEMBL-Plants: tr|I3SGZ6|I3SGZ6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0022800 LjG1.1_chr1 2777595 2780190 +
2 domain predictions
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LotjaGi1g1v0042300.1
n.a. Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0042300 LjG1.1_chr1 5815073 5820824 +
3 domain predictions
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LotjaGi1g1v0042300.2
n.a. Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0042300 LjG1.1_chr1 5815555 5820241 +
3 domain predictions
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LotjaGi1g1v0412500.1
n.a. Tubulin alpha chain; TAIR: AT1G04820.1 tubulin alpha-4 chain; Swiss-Prot: sp|P46259|TBA1_PEA Tubulin alpha-1 chain; TrEMBL-Plants: tr|A0A0L9UGJ9|A0A0L9UGJ9_PHAAN Tubulin alpha chain; Found in the gene: LotjaGi1g1v0412500 LjG1.1_chr1 90374350 90376623 -
3 domain predictions
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LotjaGi1g1v0412500.2
n.a. Tubulin alpha chain; TAIR: AT4G14960.1 Tubulin/FtsZ family protein; Swiss-Prot: sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain; TrEMBL-Plants: tr|W9QUC8|W9QUC8_9ROSA Tubulin alpha chain; Found in the gene: LotjaGi1g1v0412500 LjG1.1_chr1 90374628 90376319 -
3 domain predictions
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LotjaGi1g1v0545200.1
n.a. Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0545200 LjG1.1_chr1 107452913 107459849 -
3 domain predictions
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LotjaGi1g1v0545200.2
n.a. Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0545200 LjG1.1_chr1 107453921 107459496 -
3 domain predictions
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LotjaGi1g1v0643600.1
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain; TrEMBL-Plants: tr|I1ML11|I1ML11_SOYBN Tubulin alpha chain; Found in the gene: LotjaGi1g1v0643600 LjG1.1_chr1 120093672 120103499 +
3 domain predictions
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LotjaGi1g1v0643600.2
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain; TrEMBL-Plants: tr|I1ML11|I1ML11_SOYBN Tubulin alpha chain; Found in the gene: LotjaGi1g1v0643600 LjG1.1_chr1 120093672 120103914 +
3 domain predictions
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LotjaGi1g1v0659300.1
n.a. Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 LjG1.1_chr1 122037270 122040624 +
3 domain predictions
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LotjaGi1g1v0659300.3
n.a. Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 LjG1.1_chr1 122037789 122040099 +
3 domain predictions
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LotjaGi1g1v0659300.4
n.a. Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 LjG1.1_chr1 122037789 122040169 +
3 domain predictions
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LotjaGi1g1v0676200.1
n.a. Cell division FtsZ-like protein; TAIR: AT3G52750.1 Tubulin/FtsZ family protein; Swiss-Prot: sp|Q9LXJ0|FTZ22_ARATH Cell division protein FtsZ homolog 2-2, chloroplastic; TrEMBL-Plants: tr|I1NAM9|I1NAM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0676200 LjG1.1_chr1 124302538 124309275 -
2 domain predictions
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LotjaGi1g1v0676200.2
n.a. Cell division FtsZ-like protein; TAIR: AT3G52750.1 Tubulin/FtsZ family protein; Swiss-Prot: sp|Q9LXJ0|FTZ22_ARATH Cell division protein FtsZ homolog 2-2, chloroplastic; TrEMBL-Plants: tr|I1NAM9|I1NAM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0676200 LjG1.1_chr1 124303033 124308611 -
2 domain predictions
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LotjaGi1g1v0676200.3
n.a. Cell division FtsZ-like protein; TAIR: AT3G52750.1 Tubulin/FtsZ family protein; Swiss-Prot: sp|Q9LXJ0|FTZ22_ARATH Cell division protein FtsZ homolog 2-2, chloroplastic; TrEMBL-Plants: tr|I1NAM9|I1NAM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0676200 LjG1.1_chr1 124303033 124308632 -
2 domain predictions
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LotjaGi2g1v0107000.1
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|P28752|TBA1_ORYSJ Tubulin alpha-1 chain; TrEMBL-Plants: tr|A0A0L9VLH4|A0A0L9VLH4_PHAAN Tubulin alpha chain; Found in the gene: LotjaGi2g1v0107000 LjG1.1_chr2 36442927 36447872 +
3 domain predictions
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LotjaGi2g1v0107000.2
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A0L9VLH4|A0A0L9VLH4_PHAAN Tubulin alpha chain; Found in the gene: LotjaGi2g1v0107000 LjG1.1_chr2 36443124 36447569 +
3 domain predictions
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LotjaGi2g1v0107000.3
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A0L9VLH4|A0A0L9VLH4_PHAAN Tubulin alpha chain; Found in the gene: LotjaGi2g1v0107000 LjG1.1_chr2 36443124 36447592 +
3 domain predictions
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LotjaGi3g1v0217800.1
n.a. Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 LjG1.1_chr3 32851086 32854371 +
3 domain predictions
 –
LotjaGi3g1v0217800.2
n.a. Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 LjG1.1_chr3 32851189 32853424 +
3 domain predictions
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LotjaGi3g1v0217800.4
n.a. Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 LjG1.1_chr3 32851354 32853429 +
3 domain predictions
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LotjaGi4g1v0026900.1
n.a. Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 LjG1.1_chr4 3263112 3274563 +
3 domain predictions
 –