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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0023600 |
| Transcript ID | LotjaGi1g1v0023600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein VTA1 like; TAIR: AT4G26750.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SZ15|LIP5_ARATH Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5; TrEMBL-Plants: tr|I1M6L7|I1M6L7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0023600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2847348..2850780) extracted from Lotus japonicus Gifu genome v1.2.
CGCTGACCGTAGGGCGAGAGATTAGTCTCATGGCTGTCGGCCGTGGGTATACCTTGGTCAAGACTAAAAACAAAAAATCA AACCCCAATTAAATTTGCGGAACAAGCTTTCTCTTCCTCAAAAGGTCAAAACCCAGTAAACGACGTCGTATCTGTACATC ACCTTCTCTGTGAATTGTGATTCCGATCATCATGGCGGCGAACGAGAACGAACCGGCAAAGCTGCTGCTACCATACCTTC AACGCGCCGATGAGTTGCAGAAGCACGAACCTCTCGTCGCTTATTACTGTAATCAATTCATTCATTCTCAAATCTGATAA ACCCTAATTATCGTTATCATTATTAACTAATTTTCATTAATTTGGTGAATTTAGGTCGATTATATGCGATGGAACGCGGG TTGAAGATTCCACAGAGTGATCGCACCAAGACCACTAATGCTCTTCTTGTTTCGCTCATGAAACAGCTCGAAAAGGTTCA ATTTTTAATTATGCCCAATTAGGTTTTATTTTCATCCTAATCATAATTAACTACTAAAACACTACTAATTCTGTTAATTG ACTGTTCCATTGGTTCCCAAATTTCATTTTGTGTTGGAAAGGAAGAAGCTTTTCTCCTCATGTTATATGGCAGTGTCTGA ATCTGGATAGTAATGATGCTATAACATGTTTACATGACAACCAACATGCTGTTTTTCCTTTGAATAAATATCAGTGTCTG GAATAATTATTGGTTAAATTTTTTATGATCAACTATCCGGAAAAATTAAGCTATTGGGTAAAGATACATTAGTAGTTTTT CTATTATGTTTTTAACAAACCATGGATGGTGGTGGACAATGCATATTGATATACCTTGTACTTAAATTCAACTTCTTTTA TTAGACGAATAAGGAATGTAAGGATTGAACTTTACAGTTTAGACTACTTGGTCATAGAGGCTCTTAGTTATACCATGTCA TGAACCAATTTTCTCAAATATTTGAGCAATTGAGGGAAGACGTATGAATACATCAAGAATGTGGAGTCAATTATGTGGAT CATGCGATGCCATTAATCTGTCATGTTTTAAAATCAAAGATAGATAGTTTATTTCCAAATCTCTCTTAAGGAGTTGGCTT ATAGTTTTATATGAATGCGGATTTATAGTTTTTTTTTTTACTTCATTGAATCCTCTATTTGTTTCTAAACTAATCCTGCT TCTTGTTATCCTTACAGGATAAAAAGTCAATCCAGTTGGGGCCTGAAGACAATTTATATCTTGAGGGATTTGCTTTGAAT GTGTTTGGAAAAGCAGACAAGCAAGATCGTGCTGGGAGAGCAGATTTGTAAGTTAAAAACAAATTTTAATGAGATTTGTG TCTATTTACCACTTTATTTCTAGGCCTTTAGGCTTATCTGTTACTTCTGTCATACTCATGTCAGCTTCAATTCCTATTAC CTCAGTTGTATTGAGGACGACAAGGAATTTGAAGCTTCTTGTTCCTATCTTGGATGATGAATTTTTCATCTGTGATCAGT TTTTAACATTTATTCTTTGACCTTTTGCAGAAGTACAGCCAAAACATTTTATGCTGCTAGCATATTTTTTGAGATTCTTA ATCAATTTGGAGCAGTTCAGCCTGATGTGTGTATTCGACTGCCCTGAACCTTCATTTTTTTATGCATGTGTCATTGCATT TGCATGGTTCTCACAACCCTTTCTTATTCGACAATGATTTGATGCGAAAATATAACTTTATGAATGTGATTGTATATTTA ATGCTCTTCTGGGTCTCTTTTGCAGCTGGAGCAGAAACAGAAATATGCAGTGTGGAAAGCAGCTGATATAAGAAAAGCTT TGAAAGAAGGAAGGAAGCCCGTGGCTGGCCCACCCGATGGTGATGAGGACCTATCAGTTCCATCGAGCACTCCTAGTAAT AGATATGTATGATTTGAAACCCAACCTGGTGTATCCTGAGCTTGATCAATTCATATATACAAAGAATTAACTTTCAGTTT TTCATTCTTGCAGGATCTTGGGACTACTGAAACTACTGTTACGAGTCCTGGACCCGAGTCTGATTCAACACATAGTTATC ACAACCCTGTCAACCACGAGAATCTGCCAAGCATACATCCTTCACCCAAATTTCACGATACTGTTAATGATCAGCATTCC GCAAACATTCCACCTTCTATGCAGTTTCATGATATATTGGATAGTAACAAGCATTCTCCTACTGTTTCTCCATCATCTCA CTCATACACACCTGGAGATTATCCTTCCCATGATTACCATCCTCCTCCACCTTCCCATGAATACCATCCTCCTCCACCTT CCCAAGATTATCCTCCATCTTCCCAAGACTACCATGCTCGTCCACCTTCCCAAGATTATCCTCCATCTTCCCAAGATTAC CATGCTCGTCCTCCTTCCCAAGATTATCCTCCTCCACCTTCCCAAGATTACCAGCATCCTCCACCTGAGCTGTACAACCA TCCGCAATATTCACCAGAGCACTCACAACATATAGGTCCTAGCTACCCTTCTCATGAAACTCCTTCGCCTTATTCATATC CCAATTTTCAATCTTATCCGAGTTTTTCAGAAAGCAGTCTACCATCAGCCCCATCAAACTATACTCATTATCAAGGGTCA GATGCTTCAAATTCTTTCCAGTCAACTCCCCAAACTACAAATCCTCCATCAAGTGCTCAACACAGTTCCGGCACCAGAAA TGGAAATGTCTCGGAGCCTAAGTCAACTGCTCAGACATACCAGTACGACAGTAGCTATCAGCCGGCACCTGAAAGAATTG CAGAGGCACACAAGGCTGCAAGATTTGCTGTTGGGGCACTAGCGTTTGACGATGTCTCGATTGCAGTAGACTACCTGAGG AAATCACTCGAGTTGCTGACAAACCCATCCGCTGGACAGTAAAATTTAATGTAAAAACCTTGGGTGATTTCCATGGTTTT TGACTGTTTTAACTATTTTTTGCATGTCTTGTTTTGTAAAATATTATATTGATCATGCATGCGTGGAGAGATTCATGACT TGAATGGAAATCACAAAATATGTTTGGAGTGTGCTCTTTCTCATTCCTTAACTGAGAGTTGTCTGTTTGTCAAGTGACTT TGATATAAATAAGATGTCTGCTTGGAAGTGTTTTTCTTGTTAAGGTCTATTATCAGAACCCAATTTAGGTTCACATTCGT TCATCTGTATTTACAATACTCCTGCAGTACCTATTTCCTTGACAGTTATTGCTTTTTAATTTTACAGTTGTCTTCTTTTT TCTCAATTTTTTTTAAAAGAAAAATGCTTAAGTAAATGATGAGCTAGACGAAATGGATAATTTCTACTCATTCATACTTT TCCATCATTTTATAGATTTTGGAGAGTGCTAGCTTTGTCTTACAAATACTGAATTAATTGTTCTAAAAGTTCA
CDS sequence (LotjaGi1g1v0023600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGAACGAGAACGAACCGGCAAAGCTGCTGCTACCATACCTTCAACGCGCCGATGAGTTGCAGAAGCACGAACC TCTCGTCGCTTATTACTGTCGATTATATGCGATGGAACGCGGGTTGAAGATTCCACAGAGTGATCGCACCAAGACCACTA ATGCTCTTCTTGTTTCGCTCATGAAACAGCTCGAAAAGGATAAAAAGTCAATCCAGTTGGGGCCTGAAGACAATTTATAT CTTGAGGGATTTGCTTTGAATGTGTTTGGAAAAGCAGACAAGCAAGATCGTGCTGGGAGAGCAGATTTAAGTACAGCCAA AACATTTTATGCTGCTAGCATATTTTTTGAGATTCTTAATCAATTTGGAGCAGTTCAGCCTGATCTGGAGCAGAAACAGA AATATGCAGTGTGGAAAGCAGCTGATATAAGAAAAGCTTTGAAAGAAGGAAGGAAGCCCGTGGCTGGCCCACCCGATGGT GATGAGGACCTATCAGTTCCATCGAGCACTCCTAGTAATAGATATGATCTTGGGACTACTGAAACTACTGTTACGAGTCC TGGACCCGAGTCTGATTCAACACATAGTTATCACAACCCTGTCAACCACGAGAATCTGCCAAGCATACATCCTTCACCCA AATTTCACGATACTGTTAATGATCAGCATTCCGCAAACATTCCACCTTCTATGCAGTTTCATGATATATTGGATAGTAAC AAGCATTCTCCTACTGTTTCTCCATCATCTCACTCATACACACCTGGAGATTATCCTTCCCATGATTACCATCCTCCTCC ACCTTCCCATGAATACCATCCTCCTCCACCTTCCCAAGATTATCCTCCATCTTCCCAAGACTACCATGCTCGTCCACCTT CCCAAGATTATCCTCCATCTTCCCAAGATTACCATGCTCGTCCTCCTTCCCAAGATTATCCTCCTCCACCTTCCCAAGAT TACCAGCATCCTCCACCTGAGCTGTACAACCATCCGCAATATTCACCAGAGCACTCACAACATATAGGTCCTAGCTACCC TTCTCATGAAACTCCTTCGCCTTATTCATATCCCAATTTTCAATCTTATCCGAGTTTTTCAGAAAGCAGTCTACCATCAG CCCCATCAAACTATACTCATTATCAAGGGTCAGATGCTTCAAATTCTTTCCAGTCAACTCCCCAAACTACAAATCCTCCA TCAAGTGCTCAACACAGTTCCGGCACCAGAAATGGAAATGTCTCGGAGCCTAAGTCAACTGCTCAGACATACCAGTACGA CAGTAGCTATCAGCCGGCACCTGAAAGAATTGCAGAGGCACACAAGGCTGCAAGATTTGCTGTTGGGGCACTAGCGTTTG ACGATGTCTCGATTGCAGTAGACTACCTGAGGAAATCACTCGAGTTGCTGACAAACCCATCCGCTGGACAGTAA
Protein sequence (LotjaGi1g1v0023600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAANENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSDRTKTTNALLVSLMKQLEKDKKSIQLGPEDNLY LEGFALNVFGKADKQDRAGRADLSTAKTFYAASIFFEILNQFGAVQPDLEQKQKYAVWKAADIRKALKEGRKPVAGPPDG DEDLSVPSSTPSNRYDLGTTETTVTSPGPESDSTHSYHNPVNHENLPSIHPSPKFHDTVNDQHSANIPPSMQFHDILDSN KHSPTVSPSSHSYTPGDYPSHDYHPPPPSHEYHPPPPSQDYPPSSQDYHARPPSQDYPPSSQDYHARPPSQDYPPPPSQD YQHPPPELYNHPQYSPEHSQHIGPSYPSHETPSPYSYPNFQSYPSFSESSLPSAPSNYTHYQGSDASNSFQSTPQTTNPP SSAQHSSGTRNGNVSEPKSTAQTYQYDSSYQPAPERIAEAHKAARFAVGALAFDDVSIAVDYLRKSLELLTNPSAGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 335 | 335 | 2.3E-127 | – | |
| Gene3D | 3 | 153 | 151 | 4.9E-52 | ||
| Pfam | 14 | 149 | 136 | 4.9E-43 | ||
| MobiDBLite | 149 | 432 | 284 | - | – | |
| MobiDBLite | 165 | 206 | 42 | - | – | |
| MobiDBLite | 236 | 256 | 21 | - | – | |
| MobiDBLite | 260 | 282 | 23 | - | – | |
| MobiDBLite | 283 | 307 | 25 | - | – | |
| MobiDBLite | 309 | 323 | 15 | - | – | |
| PANTHER | 323 | 473 | 151 | 2.3E-127 | – | |
| MobiDBLite | 333 | 430 | 98 | - | – | |
| Gene3D | 434 | 472 | 39 | 6.6E-8 | – | |
| Pfam | 434 | 471 | 38 | 1.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0023600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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