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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR039431
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 21 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.473s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0023600.1
n.a. Vacuolar protein sorting-associated protein VTA1 like; TAIR: AT4G26750.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SZ15|LIP5_ARATH Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5; TrEMBL-Plants: tr|I1M6L7|I1M6L7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0023600 LjG1.1_chr1 2847348 2850780 -
2 domain predictions
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LotjaGi1g1v0319000.1
n.a. Callose synthase; TAIR: AT2G13680.1 callose synthase 5; Swiss-Prot: sp|Q3B724|CALS5_ARATH Callose synthase 5; TrEMBL-Plants: tr|G7JBJ9|G7JBJ9_MEDTR Glucan synthase-like protein; Found in the gene: LotjaGi1g1v0319000 LjG1.1_chr1 76805485 76821846 -
2 domain predictions
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LotjaGi1g1v0319000.2
n.a. Callose synthase; TAIR: AT2G13680.1 callose synthase 5; Swiss-Prot: sp|Q3B724|CALS5_ARATH Callose synthase 5; TrEMBL-Plants: tr|G7JBJ9|G7JBJ9_MEDTR Glucan synthase-like protein; Found in the gene: LotjaGi1g1v0319000 LjG1.1_chr1 76805817 76821482 -
2 domain predictions
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LotjaGi1g1v0319000.5
n.a. Callose synthase; TAIR: AT2G13680.1 callose synthase 5; Swiss-Prot: sp|Q3B724|CALS5_ARATH Callose synthase 5; TrEMBL-Plants: tr|A0A151ST57|A0A151ST57_CAJCA Callose synthase 5; Found in the gene: LotjaGi1g1v0319000 LjG1.1_chr1 76805823 76821482 -
2 domain predictions
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LotjaGi1g1v0319000.6
n.a. Callose synthase; TAIR: AT2G13680.1 callose synthase 5; Swiss-Prot: sp|Q3B724|CALS5_ARATH Callose synthase 5; TrEMBL-Plants: tr|G7JBJ9|G7JBJ9_MEDTR Glucan synthase-like protein; Found in the gene: LotjaGi1g1v0319000 LjG1.1_chr1 76805823 76821482 -
2 domain predictions
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LotjaGi1g1v0554200.2
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|I1KZH4|I1KZH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0554200 LjG1.1_chr1 108616035 108642257 +
2 domain predictions
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LotjaGi1g1v0554200.3
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A0B2QTX7|A0A0B2QTX7_GLYSO Callose synthase 3; Found in the gene: LotjaGi1g1v0554200 LjG1.1_chr1 108616289 108641390 +
2 domain predictions
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LotjaGi1g1v0554200.4
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|G7KWP5|G7KWP5_MEDTR Glucan synthase-like protein; Found in the gene: LotjaGi1g1v0554200 LjG1.1_chr1 108616289 108641390 +
2 domain predictions
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LotjaGi3g1v0126900.1
n.a. Callose synthase; TAIR: AT1G05570.1 callose synthase 1; Swiss-Prot: sp|Q9AUE0|CALS1_ARATH Callose synthase 1; TrEMBL-Plants: tr|A0A0R0ISM0|A0A0R0ISM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0126900 LjG1.1_chr3 15588416 15625572 -
2 domain predictions
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LotjaGi3g1v0126900.3
n.a. Callose synthase; TAIR: AT2G31960.1 glucan synthase-like 3; Swiss-Prot: sp|Q9SL03|CALS2_ARATH Callose synthase 2; TrEMBL-Plants: tr|A0A0R0ISM0|A0A0R0ISM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0126900 LjG1.1_chr3 15588691 15624820 -
2 domain predictions
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LotjaGi3g1v0126900.4
n.a. Callose synthase; TAIR: AT1G05570.1 callose synthase 1; Swiss-Prot: sp|Q9AUE0|CALS1_ARATH Callose synthase 1; TrEMBL-Plants: tr|A0A0R0ISM0|A0A0R0ISM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0126900 LjG1.1_chr3 15588691 15624820 -
2 domain predictions
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LotjaGi3g1v0147300.1
n.a. Callose synthase-like protein; TAIR: AT3G14570.1 glucan synthase-like 4; Swiss-Prot: sp|Q9LUD7|CALS8_ARATH Putative callose synthase 8; TrEMBL-Plants: tr|A0A0S3SK62|A0A0S3SK62_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0147300 LjG1.1_chr3 19781456 19801717 +
2 domain predictions
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LotjaGi3g1v0147300.3
n.a. Glucan synthase-like protein; TAIR: AT3G14570.1 glucan synthase-like 4; Swiss-Prot: sp|Q9LUD7|CALS8_ARATH Putative callose synthase 8; TrEMBL-Plants: tr|A0A0S3SK62|A0A0S3SK62_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0147300 LjG1.1_chr3 19781911 19800850 +
2 domain predictions
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LotjaGi4g1v0409500.1
n.a. Callose synthase; TAIR: AT2G13680.1 callose synthase 5; Swiss-Prot: sp|Q3B724|CALS5_ARATH Callose synthase 5; TrEMBL-Plants: tr|G7LE18|G7LE18_MEDTR Glucan synthase-like protein; Found in the gene: LotjaGi4g1v0409500 LjG1.1_chr4 78548633 78564442 -
2 domain predictions
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LotjaGi5g1v0362200.1
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A151RX23|A0A151RX23_CAJCA Callose synthase 3; Found in the gene: LotjaGi5g1v0362200 LjG1.1_chr5 67602820 67616745 +
2 domain predictions
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LotjaGi5g1v0362200.2
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A151RX23|A0A151RX23_CAJCA Callose synthase 3; Found in the gene: LotjaGi5g1v0362200 LjG1.1_chr5 67602880 67616180 +
2 domain predictions
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LotjaGi5g1v0362200.3
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A151RX23|A0A151RX23_CAJCA Callose synthase 3; Found in the gene: LotjaGi5g1v0362200 LjG1.1_chr5 67602884 67616180 +
2 domain predictions
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LotjaGi5g1v0362200.4
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A151RX23|A0A151RX23_CAJCA Callose synthase 3; Found in the gene: LotjaGi5g1v0362200 LjG1.1_chr5 67602884 67616180 +
2 domain predictions
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LotjaGi5g1v0362200.5
n.a. Callose synthase; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|A0A151RX23|A0A151RX23_CAJCA Callose synthase 3; Found in the gene: LotjaGi5g1v0362200 LjG1.1_chr5 67602892 67616180 +
2 domain predictions
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LotjaGi6g1v0153600.1
n.a. Vacuolar protein sorting-associated protein VTA1 like; TAIR: AT4G26750.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SZ15|LIP5_ARATH Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5; TrEMBL-Plants: tr|I1M6L7|I1M6L7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0153600 LjG1.1_chr6 43159381 43164793 -
2 domain predictions
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LotjaGi6g1v0167800.1
n.a. Callose synthase-like protein; TAIR: AT1G06490.1 glucan synthase-like 7; Swiss-Prot: sp|Q9SHJ3|CALS7_ARATH Callose synthase 7; TrEMBL-Plants: tr|G7IXI4|G7IXI4_MEDTR Callose synthase-like protein; Found in the gene: LotjaGi6g1v0167800 LjG1.1_chr6 45304801 45328043 +
2 domain predictions
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