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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0023800 |
| Transcript ID | LotjaGi1g1v0023800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Microtubule associated protein 65; TAIR: AT5G55230.1 microtubule-associated proteins 65-1; Swiss-Prot: sp|Q9FLP0|MA651_ARATH 65-kDa microtubule-associated protein 1; TrEMBL-Plants: tr|A0A0B2QV10|A0A0B2QV10_GLYSO 65-kDa microtubule-associated protein 1; Found in the gene: LotjaGi1g1v0023800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2862622..2865237) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCACTCACTGAAGCTCAAAACCCTCTTATTGTGGAAAACACTTGCGGTTCATTGTTGAAGAAGCTGCAGGTAACTAA CTTAACTTCATTCACCTGTTGATCCAACGTTACTGGTTATGTACATTGTCTGCAGGATAGTGAGATTAGTTGATTTCGTT TTATTCGTTGTAGCAAATATGGGATGAGGTAGGCGAGAGCGACGAGGAACGGGACAAGATGCTTCTTCAGTTAGAGCAGG AGTGCTTGGATGTGTACAAGAGAAAGGTTGAGCAGGCTGTAAAATCTAGGGCACAGCTGCTTCAAGCTTTATCTGATGCT AAGCTTGAGCTTTCGACACTTCTATCAGCTCTTGGAGAAAAGAGCTTCGCCGGAATTGTTAGTAACTTTGTATTGCCAAT CATAGTAGCTTTGTGGTGTATTTAAACTGTTTTGCTATGCATTTTAACCCCTTTCTTTCACAGCCTGAGGACACTTCTGG AACTATCAAGGAGCAGCTTGCAGCTATAGCACCAGTACTTGAACAGTTATGGCAACAAAAGGAAGAAAGAATCAAAGAGT TTTCTGATGTGCAGTCACAGATTGAAAAAATATGTGGAGAGATAGCTGGGAGCTTGAACCTTAATGATGTTTCACCCGCG GTTGACGAGTCCGACCTGTCGCTGAAGAAGTTCAATGAGTATCAATCTGAGCTCCAAGATCTTCAAAAAGAAAAAGTAAA TTCTGTTATATTATACTCTCCAATAATGTATCAGTTGGTCCCAAATTTGAAATGTTCATTTGATTTCATTCGCTAAACAG CACATTGAGGGTTTTATTGCATTGCTTTGTGTGGCAGACTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTAC ATGATTTATGTGCTGTCCTTGGTATGGACTTCTTCAGTACTGTAACAGAGGTTCATCCAAGCCTTAATGATACGAATGTT GTTCAATCCAAAAGCATAAGCAACGACACTCTAGCTAGGCTTGCTAAGACTGTCTTAACGCTGAAAGAAGATAAAAAGCA GAGGCTCCACAAGGTAATGCATTTAGAACTCTGTTTTATATCATAAAATATGGAATGACTGTTTAGCTGTATATGCTTTC TACTGTTAGTATCTTTTGCATCCTATGATTTTTCTCTTGCAAAATATTCCATGTATCTTTTTAAGAAATCCCTATGAATT ATGACTGTGGCATGGGGATATTCATTTTTGCTTGACCTTTAATCTATGGTTTAATTTGACCTGTATAACCCTTGCAGCTA CAAGAATTAGCTTCTCAATTAATTGACCTGTGGAATCTAATGGATACCCCTCCAGAGGAAAGGAGTCTATTTGACCATGT TACCTGTAATATCTCAGCTTCAGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGGTCGAGCAGGTACTTA CTATCTTCTGAAGTTTATAGTTTTGAGCTCCTTAAATGATGCTAACTAATGATTTTGTTCTTTTTGTAAAGGCTGAAGTG GAAGTTGAGAGACTTGATCAGCTGAAAGCTAGCAGGATGAAGGAAATTGCTTTGAAGAAGCAAGGAGAACTCGAAGAGAT ATTTGCCCGTGCTCATGTAGAAATAGATCCAGAAGCTGCCCGAGAGAGGATTATGGCATTGATTGATTCAGGAGACATTG AACCAACTGAGTTACTGGCTGACATGGACAGTCAGATAGCGAAAGCGAAAGAAGAAGCTTTAAGCCGAAAAGATATATTG GACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAATCGGGTACTTATAGCCTCCCT TCTACATATTTTTTCTCTGTCTATGTGTCTGTGTGCCATGTGGTTGGGGAATGGGGATAGAAAGCTTTGGTGATAGAGGT GAAGTAGTAATATTCTGATCCGGGCACTTGCTATCTTGTTAATAAAATTTAAAATCCTTTAACCTGATGCAATTGGCATT TGGCTTTATTCTATAGCCTACAAGTTTTAAGTTTAAAATAAAATTTAGATTTGCCACTTGATAAGAAAATTGAAAGTGGC TTGCCCTTTTTCCTAAAGTTTATAAGTTAGCTTTGGCTTTGACGCAAGTTATGATCATCCCATAAAACTGTTACATAATC CTTGTTGTTTGGATTATAATTTTACCCTGACAACCTCTGTGAAACAGGATGAAAACAGGTATAATGCGAGTAGAGGCGCA CATTTAAACCTCAAACGTGCAGAGAAAGCTCGGATACTGGTCAACAAAATCCCAGGTATCTATAGAATGAGAATACAACC ACCACATAATACTATCAATATTAATTCAATATGCTGTCAGTGTAACAAAATGATGCCACATTATTGGGATGGTTAACTTT GTTTCATCTGGTGAAATGCAGCTTTGGTTGATACATTGGTTGCTAAAACCCGTGCATGGGAAGAAGAACATGACATGTCA TTCTCATATGATGGTGTTCCTCTTCTCGCCATGCTGGATGAATATGCCATGCTCAGGCATGAACGGGAAGAGGAAAAACG AAGGATGAGAGTAAGTTTCTTTGATGATATGATTAAGACATGAATTTTCAGATTAA
CDS sequence (LotjaGi1g1v0023800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTCACTGAAGCTCAAAACCCTCTTATTGTGGAAAACACTTGCGGTTCATTGTTGAAGAAGCTGCAGCAAATATG GGATGAGGTAGGCGAGAGCGACGAGGAACGGGACAAGATGCTTCTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGA GAAAGCCTGAGGACACTTCTGGAACTATCAAGGAGCAGCTTGCAGCTATAGCACCAGTACTTGAACAGTTATGGCAACAA AAGGAAGAAAGAATCAAAGAGTTTTCTGATGTGCAGTCACAGATTGAAAAAATATGTGGAGAGATAGCTGGGAGCTTGAA CCTTAATGATGTTTCACCCGCGGTTGACGAGTCCGACCTGTCGCTGAAGAAGTTCAATGAGTATCAATCTGAGCTCCAAG ATCTTCAAAAAGAAAAAACTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTACATGATTTATGTGCTGTCCTT GGTATGGACTTCTTCAGTACTGTAACAGAGGTTCATCCAAGCCTTAATGATACGAATGTTGTTCAATCCAAAAGCATAAG CAACGACACTCTAGCTAGGCTTGCTAAGACTGTCTTAACGCTGAAAGAAGATAAAAAGCAGAGGCTCCACAAGCTACAAG AATTAGCTTCTCAATTAATTGACCTGTGGAATCTAATGGATACCCCTCCAGAGGAAAGGAGTCTATTTGACCATGTTACC TGTAATATCTCAGCTTCAGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGGTCGAGCAGGCTGAAGTGGA AGTTGAGAGACTTGATCAGCTGAAAGCTAGCAGGATGAAGGAAATTGCTTTGAAGAAGCAAGGAGAACTCGAAGAGATAT TTGCCCGTGCTCATGTAGAAATAGATCCAGAAGCTGCCCGAGAGAGGATTATGGCATTGATTGATTCAGGAGACATTGAA CCAACTGAGTTACTGGCTGACATGGACAGTCAGATAGCGAAAGCGAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGA CAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAATCGGGATGAAAACAGGTATAATG CGAGTAGAGGCGCACATTTAAACCTCAAACGTGCAGAGAAAGCTCGGATACTGGTCAACAAAATCCCAGCTTTGGTTGAT ACATTGGTTGCTAAAACCCGTGCATGGGAAGAAGAACATGACATGTCATTCTCATATGATGGTGTTCCTCTTCTCGCCAT GCTGGATGAATATGCCATGCTCAGGCATGAACGGGAAGAGGAAAAACGAAGGATGAGAGTAAGTTTCTTTGATGATATGA TTAAGACATGA
Protein sequence (LotjaGi1g1v0023800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALTEAQNPLIVENTCGSLLKKLQQIWDEVGESDEERDKMLLQLEQECLDVYKRKPEDTSGTIKEQLAAIAPVLEQLWQQ KEERIKEFSDVQSQIEKICGEIAGSLNLNDVSPAVDESDLSLKKFNEYQSELQDLQKEKTERLHKVLEFVSTVHDLCAVL GMDFFSTVTEVHPSLNDTNVVQSKSISNDTLARLAKTVLTLKEDKKQRLHKLQELASQLIDLWNLMDTPPEERSLFDHVT CNISASVDEVTVPGALALDLVEQAEVEVERLDQLKASRMKEIALKKQGELEEIFARAHVEIDPEAARERIMALIDSGDIE PTELLADMDSQIAKAKEEALSRKDILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPALVD TLVAKTRAWEEEHDMSFSYDGVPLLAMLDEYAMLRHEREEEKRRMRVSFFDDMIKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 57 | 57 | 9.7E-244 | – | |
| PANTHER | 1 | 57 | 57 | 9.7E-244 | ||
| Pfam | 24 | 446 | 423 | 1.8E-76 | – | |
| PANTHER | 52 | 446 | 395 | 9.7E-244 | ||
| PANTHER | 52 | 446 | 395 | 9.7E-244 | – | |
| Coils | 118 | 145 | 28 | - | – | |
| Coils | 202 | 222 | 21 | - | – | |
| Coils | 261 | 281 | 21 | - | – | |
| Gene3D | 332 | 449 | 118 | 2.5E-27 | – | |
| Coils | 424 | 444 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Microtubule cytoskeleton organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. | ||
| Molecular function | Microtubule binding | Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. |
Expression pattern of LotjaGi1g1v0023800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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