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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0024700 |
| Transcript ID | LotjaGi1g1v0024700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GrpE protein homolog; TAIR: AT4G26780.1 Co-chaperone GrpE family protein; Swiss-Prot: sp|Q11B39|GRPE_CHESB Protein GrpE; TrEMBL-Plants: tr|A0A0B2RV54|A0A0B2RV54_GLYSO GrpE protein homolog; Found in the gene: LotjaGi1g1v0024700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2953912..2960067) extracted from Lotus japonicus Gifu genome v1.2.
CTAATTGATGTGTTTTCTGTTCACCGCCGCAATCACCTTCTTCCCCTTCTCATTTCCTCTTTCTCTAAACCCTTGATTTT CCCTCTGCAAATTCGATCTCCATTTCCATTCCCATTTCCAAAGTTTTCATCTTTTGCCCCTCAACCCTTCTCTTTTCCCT TCAATTCCCTCAACAATGTTCGTCAATAAGCTTCTAACCCGTATCTCCAGAACCGTTTCCAGAACCTCCCTTCTCTCTGC TTCGCAAAGACCCCAACAATTCCATTCCCTCCTTCCCCAATCACCCAACAAGGTTCGCTCCCATGCTTTCTGATTTCAAA ATTTCATTTTTTCCCCATTTTCATAGACTAGGGTTTTACTAGGGTTTTAGACCCTTTGATGAAAATTGGACAATTTTAAT AGTTTCAATGTTAATTAGGGTTTTACTAGGGTTTTAGGACCTTTGCTGAAAATTGGTCAATTTTAGTTTCAATGCTAATT CTCATTGTTGTGTTCTCTTTGATGCTGTTGTGTTGAATTTGGCTATTTTATGTGGGGAGAGGTATCCACTAACCAGTGCC ATTTTTTATGTTAGGGTTCCTTTTAAATTCAAATGTTCAGGAAAAAAATCAATGCAATGTCATTTTAGGGTTCAGAATAA CTGAATATATAGCTATGAAATCTCTTCTGTCATTTTGCTACAACTGGTTTTGATTGTCCATTTAGCCAGGGTTTTATCAG GGTGGTATGTGATCCATTACGCTAAAGAAGATTTTACGATAATTAATGTGAACGAGTGCTTTATGCAGAAGAAAGGGTTT TAAGAAATGTTTTCACTTGGTCTGAACTGAAAATAAGTATTTAGGTTACGTTTGGGTAAACAACTTAATTAAGCGCCTAT GACAATAAGCGCTTATCGTATAAGCAATTATTCGAAAGCTAATTTGAGAAACTTATAGAAATTGACTGAAAATAGGTTAT AGATTAGCATAAGCTAATATGACCAGCTTATGAAAATAAGCTCAACAATTTCTCGGTAGACCAAAAACTATTGACATAAG CTCTCCCAAACACTTGCGTAAGCGTTTATGCTAGAAGATAAACTCAAATAAGCTCTTCCAAGCGGGATCTTAGTCTTGTG ATTTTATTTTTTCAAAAAGTCATGCTTTAGTCAACTTAAAAAGAAAAAAAGTGATTGATGAAAAATCTGTAATCTGACAG ATACAACTTTATTTTATTGATGAAGAGCACCATGCTTGAGCTTAAGTCATATAATATGCCCAGTCCTCCAACTTTTTTTT TAATCTTATTTTTATGTTTTTCTCTCTGGGGTTTTTTTTTTTTTGGCATAAGCAGGTTCAAGTGCCTTCAATATATGAAG GGATATAGTATGAAAATTATTTATATGATGGTTAATTGATTATTACTGTCCTGTGGTCTAGGATCCATTTATCTTCCTTA AAATTCTCTATTGGATAAATTTGAAGATACGTTCTAAAATTCTCATTAATTTTCACACATGTTTTACAATATACCAGCTG ATTTCAGCTCAAGCAAATTTGTTATGTCCAACAATAAGTTCCTTAACTCCAAGATTTGGATTTTCTTCATCACCCACAAC TGAAACTAATGAAAAAGAAAAAGAGAACCATCAGCATAATGGCAGTTCTTCAACTGATGACCCAATAAAAACAAGTGAAG AGGCCAAGAAAGTTGATCAGGATGGACAAGCTAAGCCTGTAGATGAAACAACAGAATCAGGTTCTATTTCAGATTCTCAG TCTCAAACTGTCAAAAGAAGGAGCAGGGGTATTAAACGAACTGCATTTTCTGATTCAGATTCAGATTTCGATTCAGAGAG TGAATGTGATCTTTCCAGGGAAGATTTAATTAAGCTTGTGTCTGAGAAGGAAGAACTTTTGAAGTTAAAGCACAAAGATA TTGAGAAAATGCACGATAAAGTTCTGCGTACTTATGCAGAGATGGAGAATATCAAGGACAGGACTAGACGTGAAGCAGAG AATTCAAAAAAATTTGCTATACAGGTCTAAGTTTGAACCTGTCTGTCCCAAATATTTTATTCTTCAACTTTGTGCTAAGT GTGTTAAATGTGATGCAGAATTTTGCAAAGAGCTTACTAGATGTTGCGGATAATTTGGGAAGAGCTTCATCAGTTGTAAA AGAAAGTTTTTCAAAAATTGATTCGTCGAGTGACTCTGCTGAAGCGGTAAAACTCCTGAAAACACTTATGGAAGGTGTGG AAATGACTGAGAAACAACTTTCAGAGGTAGAATGTTCTACTTTATGTTGTTTCTGTTTAATTGCAATTGTCAAAGATAAT CTAGTATAATATATTTTTCTTTTATAAGGTTATTTTTCTTCTGTTTTCTGCTATTGCTGCTATGTTAATCATTTATGGTC TTGTTTGTTCATGGTAGTGGATTTAAGTTCATTGGGTGAATGTGTCTTATGAATGTAAGGGTGATTTTGTGGGGGGAGGG GGGGAGAGGCTTTGAGCTCAGTATTTTGGTTGTTTAGGGCTATAAGATTAGGGGTTTATATTGGTTTATTTTCAAAAGCC AATTATATTTTAAAGGGTTAAACGTTATATTGGTCCCTGTCTTTGTGTTGCCGTCTGAACCAAGTCCCTCCCCGGAAAAT TTATTGATTTGGGTCCTCATTTTTGAAAAGTTTTTGGGGCAAATCCTCGCCGGAGGGCGGAGCTCCGGCGAGTGCATGTG TGGCATGCTGACTAGCTTTAATGAGGTGATGTGGAATAAAAAAAAATTGAAAATTCAAAAATAAATTACACCTCAGTTTT GTAAAAACAATTAACATAATCCTAATCCAACCCTAACTTGATTAACCAAAATTAATTCCCCCCCAAACTTAACCCAAATC CCCAATTCCCAAATTGAATCTGAAGATTCACCCCAAACTAATTTTTTTTACATTAATCTCATATTCATTTTCTTATCTTC ATAAAATTAAGAATAATAAACAAAAGAAAATACCAAAACACCCAATTTAATTTTCCCAGGTCTTCACTTCCAAAAAAAAA AATTCCCTAATCTTCAACGTCATAACAGAAAACCCAGAAACACATGATGTTGAATCCTTCAACAGAAACCCAGAAACACA TAAGTTTGGTGTGCTGAGCCAAACCTCCTCACGGCCTCACCCCAAACCTCCTCACCCAAACCCTCCTCCACCTGCAATCA CAGATCTGTGAGCCCCAACCCCACCCCCACCTGCAACCAGATCTGTAAATCGAAGGGCAGAGTGAAGCGTGAAGTGGTCC AGTGTGTGAAGCATGAAGTGCTCCAGAGGGAAATGAAATTCATCTCCGTCGGGTCCGGCGTGGAGGTTTAACTGATAGCT GTGCTGAGCCTCGGCCTCGTCGTCTCCGTCGCTGAGGATAGGTTAGGGTGGGAAACTGTAACAGTCGGGTCGGGTTTGAT GCGGGGAAGACGGTTCTGCGGGTGGGTTCTTTCGGATCTGTTGTTTTGATTTCAGGTTTGATCAATCAGAGGGTGGAGGA GTTGTTGGAGGGTCAGGATTCGATTAGCGGGTGAGGGTGAGGTTTGGGGCTTGGGGTTTCGGTTGGGTTGGGATTGGGGG TGGGGCGAGGATGGGGGTGGGGTTGGGGTTGGGGTTGCAGTGGGTGGGTGGGTGTTGGGGTTGAAGTTGCGGGTGGATCC GTGGATATGGGTGAGGATGCAGGTAAGAATTTTTATGGGGTAATATGCTTTTTGAAAGATCCCAAGAAAGAAGAACTGTT GAGAAGGAGAAAGAAACAGGGCAATGCTGCAGAAGGTGAATCCTCCAATGTTGGTGGCCAGGGTGATATATCTGCAGAAG AAGCTGCTGAGCAAGCAGTTGTCATGAGATCACAGATTCATATCTGCTGGGGTAATATGCTTTTTGAAAGATCCCAAATT GAATGCAAATTGGGTTTAGGGAATGGATGATGATGATGATTTGGGGTTGAAGAGGATAAGGAATTTGGATTTTTAATTTT ATTTTTTCTGTTAATAGGGTTAAACTCTAAACCCTTAATTAATTTTTAATTTAAATTATTTTTTTTAATTTAAATTAATT TTCTGATGTGTATTTTTTTTAATTTTCTTTTTTTTCCTAATAATCCACGTAAGCATTTTTATCCTTGTCAGCGATCCAAA TCAGCACTCGTCGGAGCTCAGAGCTCCGGCGAGGATCCGCTCCAAATAATTTTCAAACATGAGGACTATATACAATAATT TTTCCGGCGAGGGACCTAGGTCAGACGGCGACACAAAGACAGGGACTAATATGATGCTTAACCCTATTTTAAAATTACAA ACTTTTTGAAATGGTTTTCTTATTCTTCTTTTTATAACTATTTCCTGAATTGTTTTCTTAACAAAAAAATTAGTTCTTTG TTCTAAAAATACTAGATTTTGCATTTAACAAGATTGTAGTCTACCCGGGGAATCTTGATTAGAGGGATGCCGTGGGGAAT TTGAGGGAAGACTTCTGTTATAAACAGTAAGTTTAATTTATAACTACTATGCTTATTATGAAAGATTTTGCCATATATAT CTTGCAATACATCATTGTGTGCTTTAAATAATGTGCTTTCTGAGCATAGTATAGTGCTTCAGTATACTGTTTTAAAGCTT ACTGCTTCTACCTACAGGTACTTAAAAAGTTCGGTGTAGAAAAAATTGACCCTATAAATGAGCCATTTGATCCACATAGG CATAATGCCATCTTCCAAATCCCTGATGGTTCCAAGCCTCCAGGCACTGTTGCAGCTGTTCTGAAGGTAAATTACACAAT TGTTTTTAGAAGGACTGTGATTTGTTTTTCCCAATTTTAAAATTTGTTATCGGCTCTTCAAAAATCTTGACTTGTGTTAT TGTTGGTCTATGATACATGGATACTCCATCTTTTTTTTTTGTTGGAGGAGTGTCTGTATCATATTCACAAATGCTGATGC TTTTATTCATTCTACTGCATCTGTTGTTTTGATGTATGTATATCATTTTTATTTGGAATAAACTGAGTTATATATCCAAG TCATGTTCTCTCCCATACTCTGCCTCTATATCCACGTTGAATCATATCAGACATGCAGCTGCTGAATATCCTTTCAGTTT GCAACTTGACAAGTTATGGTTGATCTTTGTCACAAATCTTAATCATGCTGATACTTTCTGTTTATGATTGCCTGCCTGAC AAAAGGCTTTTCAGAAAGCGGCTTTGCTTCGTTCTATGTGGGAATGGATGTGATCTTATTCTTGATTATTTTTAATAGTT CATTTAGGAGATTGAAACAAACAAACAAAATGTCTTATCCTGCGGCTATATGGATACAGATCCATATTAAAGATATCGGC CTGTTTTACGTTGACTGCCGAAAGCCTAACACAACTTTCCTCTTTCATCCGGGCATAGGTGGAGTTATTTAGGAGATTGA AAACATGAATAAAAAGCTATCTTATGGTTATGTTTGCAGGCAGGATATGTGCTTCATGATCGTGTTATTCGTCCAGCAGA AGTTGGTGTGACTCAAGCAGTAGAAGACAATCCAACGGAGTAATGGAGAAGATAGTATAGCTGGTAAGGACTCATGATAA GGGGATTCTGGAGTGGCTTCTTATTGAAGATTTTCCAATGTTTATTTCAATTATGTATCTTCAGAAGCATTATGATCTGC TCTCCTTGACACTACCTCTACTTTCCATGCCTTTAACCTGCATGCAACTGAGTATTCTTATAAACTAGTGTCTCTAGAGT AACATGATACCATAAGGTGGGATTAATTCCAACAGATCTTGGTTGTATTATACTCTTTATACAGATTCATTGTAATAATT TTTTTAGTAGTGGGACTCTGATATGTTGTGTTGTCTTACACAATCTTAGGAGTTATGCTCACTTCGTTTAAGATCATAAT TCATAGGCTAGGAAAGATGACTAGTTGGTGCATGTTTGGAAATCCTTCTTCTATTTGATTTGACTGTCATAATCAATTAT AAGGAAAAAACTAATGTGAATAACTTATGAATTTCATAATTGCTTTTGATAAAAGAGCTTCTATTCACGAATGCGAATTC CCTGGAAGGACAAAGCAATATGAATGATGGTAAATTGGTTTGTTTTGAATTCAAAGTAAAATGAAGTTTGAATCGA
CDS sequence (LotjaGi1g1v0024700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGTCAATAAGCTTCTAACCCGTATCTCCAGAACCGTTTCCAGAACCTCCCTTCTCTCTGCTTCGCAAAGACCCCA ACAATTCCATTCCCTCCTTCCCCAATCACCCAACAAGCTGATTTCAGCTCAAGCAAATTTGTTATGTCCAACAATAAGTT CCTTAACTCCAAGATTTGGATTTTCTTCATCACCCACAACTGAAACTAATGAAAAAGAAAAAGAGAACCATCAGCATAAT GGCAGTTCTTCAACTGATGACCCAATAAAAACAAGTGAAGAGGCCAAGAAAGTTGATCAGGATGGACAAGCTAAGCCTGT AGATGAAACAACAGAATCAGGTTCTATTTCAGATTCTCAGTCTCAAACTGTCAAAAGAAGGAGCAGGGGTATTAAACGAA CTGCATTTTCTGATTCAGATTCAGATTTCGATTCAGAGAGTGAATGTGATCTTTCCAGGGAAGATTTAATTAAGCTTGTG TCTGAGAAGGAAGAACTTTTGAAGTTAAAGCACAAAGATATTGAGAAAATGCACGATAAAGTTCTGCGTACTTATGCAGA GATGGAGAATATCAAGGACAGGACTAGACGTGAAGCAGAGAATTCAAAAAAATTTGCTATACAGAATTTTGCAAAGAGCT TACTAGATGTTGCGGATAATTTGGGAAGAGCTTCATCAGTTGTAAAAGAAAGTTTTTCAAAAATTGATTCGTCGAGTGAC TCTGCTGAAGCGGTAAAACTCCTGAAAACACTTATGGAAGGTGTGGAAATGACTGAGAAACAACTTTCAGAGGTACTTAA AAAGTTCGGTGTAGAAAAAATTGACCCTATAAATGAGCCATTTGATCCACATAGGCATAATGCCATCTTCCAAATCCCTG ATGGTTCCAAGCCTCCAGGCACTGTTGCAGCTGTTCTGAAGGCAGGATATGTGCTTCATGATCGTGTTATTCGTCCAGCA GAAGTTGGTGTGACTCAAGCAGTAGAAGACAATCCAACGGAGTAA
Protein sequence (LotjaGi1g1v0024700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVNKLLTRISRTVSRTSLLSASQRPQQFHSLLPQSPNKLISAQANLLCPTISSLTPRFGFSSSPTTETNEKEKENHQHN GSSSTDDPIKTSEEAKKVDQDGQAKPVDETTESGSISDSQSQTVKRRSRGIKRTAFSDSDSDFDSESECDLSREDLIKLV SEKEELLKLKHKDIEKMHDKVLRTYAEMENIKDRTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIDSSSD SAEAVKLLKTLMEGVEMTEKQLSEVLKKFGVEKIDPINEPFDPHRHNAIFQIPDGSKPPGTVAAVLKAGYVLHDRVIRPA EVGVTQAVEDNPTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 13 | 13 | - | – | |
| PANTHER | 20 | 114 | 95 | 1.4E-126 | – | |
| PANTHER | 20 | 114 | 95 | 1.4E-126 | ||
| MobiDBLite | 58 | 147 | 90 | - | – | |
| Hamap | 72 | 326 | 255 | 19.156 | ||
| MobiDBLite | 89 | 106 | 18 | - | – | |
| MobiDBLite | 107 | 124 | 18 | - | – | |
| PANTHER | 137 | 333 | 197 | 1.4E-126 | ||
| PANTHER | 137 | 333 | 197 | 1.4E-126 | – | |
| Gene3D | 154 | 269 | 116 | 3.6E-24 | ||
| Pfam | 159 | 325 | 167 | 5.8E-50 | ||
| SUPERFAMILY | 162 | 270 | 109 | 4.32E-23 | ||
| CDD | 175 | 324 | 150 | 6.63057E-62 | ||
| PRINTS | 182 | 198 | 17 | 6.8E-17 | ||
| Gene3D | 270 | 326 | 57 | 5.2E-20 | ||
| SUPERFAMILY | 271 | 326 | 56 | 1.12E-17 | ||
| PRINTS | 278 | 293 | 16 | 6.8E-17 | ||
| ProSitePatterns | 281 | 324 | 44 | - | ||
| PRINTS | 305 | 324 | 20 | 6.8E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Adenyl-nucleotide exchange factor activity | Stimulates the hydrolysis and exchange of adenyl nucleotides by other proteins. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Protein homodimerization activity | Interacting selectively and non-covalently with an identical protein to form a homodimer. | ||
| Molecular function | Chaperone binding | Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. |
Expression pattern of LotjaGi1g1v0024700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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