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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0028600 |
| Transcript ID | LotjaGi1g1v0028600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aconitate hydratase; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic; TrEMBL-Plants: tr|G7I4S9|G7I4S9_MEDTR Aconitate hydratase; Found in the gene: LotjaGi1g1v0028600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3430879..3434706) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGCCCTGAATATGGAGCAACAATGGCCTTCTTCCCTGTAGATAATGTGACATTGGAGTATCTTAGATTGACTGGAAG AAGTGAAGAGACAGTGAGACACTCTTACTTTTTTTTCTCCTTCAAAATAGTTTAGTTTTCTCAGTATAAAAAATTATGTA GTTGACTATTTTGCTTGCTTACAGGTTTCAATGATAGAATCATATTTATATGCAAACAGATTGTTTTATGACAGTAAGAA GGTAAAATCTTCTGTTGCATAAATAAGTAGATGTTATGATTGCAAATTATCGATCTTCGGTCATGGAGACTTTTCTTTCA TCCAGGCTCACAGTGAAAGAGTATACACATCTCATTTGCAGTTGGACTTGGGAGAAGTTGAATCATGTGTTTCAGGGCCC AAAAGGTATACCTAACTAAGTGCTTGTTTGGACATCCTTATAGAATTGATTCTAGCGACAAAAGCAATTATGAGAAGACG CTACTAGATGCCAGAGCTGATCCTAAGAAAAGATAAGCTGATCCAAACATGATATAATAGCTTAATGCTTGTATTCCTTT ATATTAATGCATTGTGATCCATACATTTTGAAAGGCCTCATGATCGCGTTCTCTTGAAAGACATGAAAGCAGATTGGCAT GCTTGTCTTGACAACAAAGTTGGATTCAAGGTGATCTGGATCTTGCAGACAACTTTGATTTTTTAATAGATACAATATGG AAAACCCGGAAAGCAATATTTGTTTGCTTGATCATGCTGGTGAAACAATATAAACATTCACCTTCAGTAGTAACAGTTTA TTCATTCAGTTAACATAGACATCCCACCACAGTGTCCATGGATCAATCATGTTGATTGTTGTGAGTGATGTTTTGACATA GAGGTTCAATTAATATATAATGTTTTATCACGTTGTCTATCTTTGTTATCTTTTTAACTGATTTTTTACTCAGTTGTTTA TATTATTGGATATTTAGCAGGGGTTTGGGATATCAAAAGGAGAAAAGGATAAAGTCGTAAAGTTTTCTTTCCAAGGACAT CCCGCTGAGATTAAGCATGGAAGTATTGTCATTGCAGCCATTACAAGTTGCACAAATACATCAAACCCTAGTGCAATGCT TGGGGCTGGTCTTGTTGCCAAGAAAGCTTGTGAATTAGGTTTGGAGGTTAGTCTCAAATCTCAGCACCTAAATGTAAATT TAAGGAATTTGAAATTAACATTCACTTAACTTTAATTTTAATATCAATCATGCTTTTCTTGCTTCTTATGTCAGGTTAAG CCATGGACTAAAACAAGTCTTGCTCCTGGCTCAAGGGTAGTAACAGAATATCTGATCCAGAGGTTTGACATATACCTACC CTTTTGTCTTCTTATGCGAATAAGAACACACCTGGCTTATACTTACATTTTTTTCAGTGGCCTGCAAAACTACCTAAACC AGCAAGGCTTTCACACAGTTGGCTATGGTTGCACAACTTGTATTGGGAATTCCGGAGAACTTGATGACTCATTAGCATCT GCAATTTCAGAAAATGGTACATAATGAACTGTGAGATATTCTTCTCTTTTGGGAACCTATAGCACATGCTAGATATTGAT CATTCTTTACAATTCAAGTGGCTTTGATCTTATTTAAATATCAATTTTGGATCTTCATACATTTAGTTTTCATGTTCTAT CTTAATCACCTGTTTTCTAGTTTAATCTTCTTTCTCCTACCTTTGTAGACATTATTGCAGCTTCTGTTCTTTCTGGAAAC CGAAATTTTGAAGGCCGTATTCATCCATTAACAAAAGCCAACTACCTTGCTTCTCCCCCATTAGTTGTTGCCTATGCACT TGCTGGCACGGTTTGTCTGTATTCTTTTTCTTGCATGATATAGTGTTACCTTTAAAGTGTACTTTAGGCACATATTTTGG TGAAGATACTCAAACAATTAATAGCTTGGACATATTGAGAGTTTTTAGTTAGATATGCTTATATTTTAACTTCAGCTCAA TGACAATTTCCATTTCAGGTTGATATTGATTTTAATGAAAAACCAGTAGGAACGGGAAAGAATAGAAAGAGTGTGTACCT GAAAGATATCTGGCCTAGTAATGAAGAGGTCTCTAAGGTAGAAAGAAGGTTTAAGCTATGACATTAATGTAATGATTTTT TATTTTAAGCTATAATTTTACACTTTGATAAGTATTGCTCTTAATGCTTATATAGGTTCTTCAAACTTATGTATTACCTG ACATGTTCAAGAGCATTTATGAATCTATTACAAATGGTAACCCTATGTGGAGTGAGCTTTCAGTTCCTTCTTCGACTTTG TACTCATGGGACCCAAACTCCATGTACATTCATGAGCCTCCTTATTTTAAGAATATGACCATGGATCCCCCTGGTCTTCA AGGGATAGAGGATTGCTATTGCTTTCTTAAATTTGGAGATGGTATTACCACTGATCATATTTCTCCCCCTGGAAGAATCC ACAAGGATAGCCCTGCTGCAGAGTACTTACTTGAGCATGGCGTGGATCACCAGGACTTCAATTCTTATGGTAGTCGGCGC GGAAATGATGAAGTGATGGTGAGAGGCACATTTTCCAGTATCCGTCTTGTGAACAAACTTCTGAATGGAGAAGTAGGTCC AAAAACTATTCACTTTCCAACAGGAGAAAAACTGTCAGTGTATGAAGCAGCAATGGTGAGTATTAATAGTTTAACAGATG GGTAAGTTTCATATGAAAAATCATTTTTAACCCATGTTACCCTGAGCCTTGACAAATCAGTAACCAAGGTGATATCTGTT TGGGTGCGGACTAAAGAGTACTTATTGAAGCCTATCTACTCGAAAAAACACTAGATAAGCTTCAGTAAATGTTCTTGGTC TATGTCCAAACAGGCTTATATTGTATCAAATGTTATTAAGCAAGAAATTGGATCTGGAGTCTTGTTGAATTAGATTATCA TATGCTTCCTCTTTTAAACTATGTAGTAGATTGATTGAGACCTACTTTACAGACTAATGAATATTAATTCTAACTCATTG TATGTTTCAATCAGTTTCTTTTTCCTCATAACCAATTTTGCGGAGAAGCTTCTATGAGAATTGATTCTAACTTTATAATT ATAATCAATTTAGAAAAAACATTCATGCATTTAGTATGGTCTTTTTCTATACAGAGATATAAGGCCTCTGGTCAAGGCAC CATCATCTTGGCTGGAGCAGACTATGGAGCAGGAAGCTCTCGAGATTGGGCTGCTAAGGGTCCTCTGCTACTTGTGAGCA TACAAAATGATGTTCACATTCACTACATTGCTTTTTCCCCCTCTTTTTCGCAAATATTTTTTCACTTGCTTTTAATTGTA GGGGGTGAAAGCAGTAATTGCAAAGAGCTATGAGAGAATTCACCGTGGTAATCTTGTTGGGATGGGGATCATTCCACTTT GCTTCAAGCCCGGTGATGATGCAGAAACACTTGAATTGACAGGCCACGAGCGTTTCACAGTTGATCTTCCAAGAAAAGTT AGTGATATAGAACCTGGTCAAGATGTTAATGTCACCACTGACACTGGCAAATCTTTTACATGCAAGCTTCGCGTTGATAC AAAGGTAAATGTTGTTAGAAACATAATATAAAATCTTTCATATATCTTCACTCATCAATTTAAGCTTTTAAGACAATTAG TTCATAACGCTTCAATGACCAAGTGGTAGAGTTCAATCCTTATTACCCCTTATTCTAATAAAAAGTTGAATATCTACACA AGGCAAGTGAGTATGTGCATTATCCACAGCCGGAACGCACTAACAATTCATGTAGTTTCACTCAATAA
CDS sequence (LotjaGi1g1v0028600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCCCTGAATATGGAGCAACAATGGCCTTCTTCCCTGTAGATAATGTGACATTGGAGTATCTTAGATTGACTGGAAG AAGTGAAGAGACAGCTCACAGTGAAAGAGTATACACATCTCATTTGCAGTTGGACTTGGGAGAAGTTGAATCATGTGTTT CAGGGCCCAAAAGGCCTCATGATCGCGTTCTCTTGAAAGACATGAAAGCAGATTGGCATGCTTGTCTTGACAACAAAGTT GGATTCAAGGGGTTTGGGATATCAAAAGGAGAAAAGGATAAAGTCGTAAAGTTTTCTTTCCAAGGACATCCCGCTGAGAT TAAGCATGGAAGTATTGTCATTGCAGCCATTACAAGTTGCACAAATACATCAAACCCTAGTGCAATGCTTGGGGCTGGTC TTGTTGCCAAGAAAGCTTGTGAATTAGGTTTGGAGGTTAAGCCATGGACTAAAACAAGTCTTGCTCCTGGCTCAAGGGTA GTAACAGAATATCTGATCCAGAGTGGCCTGCAAAACTACCTAAACCAGCAAGGCTTTCACACAGTTGGCTATGGTTGCAC AACTTGTATTGGGAATTCCGGAGAACTTGATGACTCATTAGCATCTGCAATTTCAGAAAATGACATTATTGCAGCTTCTG TTCTTTCTGGAAACCGAAATTTTGAAGGCCGTATTCATCCATTAACAAAAGCCAACTACCTTGCTTCTCCCCCATTAGTT GTTGCCTATGCACTTGCTGGCACGGTTGATATTGATTTTAATGAAAAACCAGTAGGAACGGGAAAGAATAGAAAGAGTGT GTACCTGAAAGATATCTGGCCTAGTAATGAAGAGGTCTCTAAGGTTCTTCAAACTTATGTATTACCTGACATGTTCAAGA GCATTTATGAATCTATTACAAATGGTAACCCTATGTGGAGTGAGCTTTCAGTTCCTTCTTCGACTTTGTACTCATGGGAC CCAAACTCCATGTACATTCATGAGCCTCCTTATTTTAAGAATATGACCATGGATCCCCCTGGTCTTCAAGGGATAGAGGA TTGCTATTGCTTTCTTAAATTTGGAGATGGTATTACCACTGATCATATTTCTCCCCCTGGAAGAATCCACAAGGATAGCC CTGCTGCAGAGTACTTACTTGAGCATGGCGTGGATCACCAGGACTTCAATTCTTATGGTAGTCGGCGCGGAAATGATGAA GTGATGGTGAGAGGCACATTTTCCAGTATCCGTCTTGTGAACAAACTTCTGAATGGAGAAGTAGGTCCAAAAACTATTCA CTTTCCAACAGGAGAAAAACTGTCAGTGTATGAAGCAGCAATGAGATATAAGGCCTCTGGTCAAGGCACCATCATCTTGG CTGGAGCAGACTATGGAGCAGGAAGCTCTCGAGATTGGGCTGCTAAGGGTCCTCTGCTACTTGGGGTGAAAGCAGTAATT GCAAAGAGCTATGAGAGAATTCACCGTGGTAATCTTGTTGGGATGGGGATCATTCCACTTTGCTTCAAGCCCGGTGATGA TGCAGAAACACTTGAATTGACAGGCCACGAGCGTTTCACAGTTGATCTTCCAAGAAAAGTTAGTGATATAGAACCTGGTC AAGATGTTAATGTCACCACTGACACTGGCAAATCTTTTACATGCAAGCTTCGCGTTGATACAAAGGCAAGTGAGTATGTG CATTATCCACAGCCGGAACGCACTAACAATTCATGTAGTTTCACTCAATAA
Protein sequence (LotjaGi1g1v0028600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCPEYGATMAFFPVDNVTLEYLRLTGRSEETAHSERVYTSHLQLDLGEVESCVSGPKRPHDRVLLKDMKADWHACLDNKV GFKGFGISKGEKDKVVKFSFQGHPAEIKHGSIVIAAITSCTNTSNPSAMLGAGLVAKKACELGLEVKPWTKTSLAPGSRV VTEYLIQSGLQNYLNQQGFHTVGYGCTTCIGNSGELDDSLASAISENDIIAASVLSGNRNFEGRIHPLTKANYLASPPLV VAYALAGTVDIDFNEKPVGTGKNRKSVYLKDIWPSNEEVSKVLQTYVLPDMFKSIYESITNGNPMWSELSVPSSTLYSWD PNSMYIHEPPYFKNMTMDPPGLQGIEDCYCFLKFGDGITTDHISPPGRIHKDSPAAEYLLEHGVDHQDFNSYGSRRGNDE VMVRGTFSSIRLVNKLLNGEVGPKTIHFPTGEKLSVYEAAMRYKASGQGTIILAGADYGAGSSRDWAAKGPLLLGVKAVI AKSYERIHRGNLVGMGIIPLCFKPGDDAETLELTGHERFTVDLPRKVSDIEPGQDVNVTTDTGKSFTCKLRVDTKASEYV HYPQPERTNNSCSFTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 312 | 312 | 7.85E-107 | ||
| PANTHER | 1 | 556 | 556 | 0.0 | ||
| Gene3D | 1 | 52 | 52 | 5.1E-10 | – | |
| PANTHER | 1 | 556 | 556 | 0.0 | – | |
| Pfam | 1 | 247 | 247 | 4.2E-73 | ||
| PRINTS | 51 | 65 | 15 | 1.7E-8 | ||
| Gene3D | 53 | 275 | 223 | 3.9E-110 | ||
| ProSitePatterns | 112 | 128 | 17 | - | ||
| PRINTS | 116 | 127 | 12 | 1.7E-8 | ||
| ProSitePatterns | 178 | 191 | 14 | - | ||
| PRINTS | 178 | 191 | 14 | 1.7E-8 | ||
| Gene3D | 276 | 337 | 62 | 3.1E-24 | – | |
| SUPERFAMILY | 316 | 554 | 239 | 1.2E-76 | – | |
| Gene3D | 339 | 563 | 225 | 3.4E-97 | ||
| CDD | 353 | 523 | 171 | 3.47554E-106 | – | |
| Pfam | 377 | 503 | 127 | 1.4E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0028600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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