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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0032200 |
| Transcript ID | LotjaGi1g1v0032200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (Reverse transcriptase); TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SXX7|A0A151SXX7_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0032200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:4096589..4100730) extracted from Lotus japonicus Gifu genome v1.2.
TTGTTCTAACTTATAAGTAGCAATAAGTTCTTTTTAGTCCTTATCTAAACAGCTTGTTGACTTGTCGCATGAGCTGTTTG AGCTTGTCTTGTCTAGTAATTTTATGTCATAATCTATCCGTAGATTGATTTATCCAAGCTTAGTTTAACTTTATCATAAT TCATGAGGCGGCTAGGAAGAAGAAGCCAACTTTCTTGATTACGAGAAAGCTTACGATTCGGTAAACTGGAACTTTTTAGC CTATATGTTAAAGCGTATGACCTTTGGGGATAGGTGGAGAAAATGGATTAGGGGATGCCTTGAATCTTCCTCCATCTCAG TTTTAGTCAATGGCAGCCCAACTCAAGAATTCAGAATGGAAAAGGGAGGAAGATTGTGTGGTTGGATTGGGCTAAGGTGT GTCGGCCTATAGGGGAAGGAGGGCTGGGTATAAAGAATTTAAAGTCTTTTAATCGAGCCCTTCTAGGGAAGTGGAGATGG AGGATGTTGCAGGAAAGAAACAGTTTATGGTGCCAAATCCTGGTTGCGAATTATAATGGTACTCTTCATCGAATGGATTC CACTTGGTGGAAGGATTTGAATTCTGTCTGCTTTGGGGAGGAGTGTGGTCGTTGGTTTAATGAGGCGATATGTAGAAGGG TTGGGGAGGGTAGGGATGTAGCTTTCTGGAAGGAGAATTGGACGGGGGCAGGGAGCTTTATCAGCATCTTTCCGAGGCTT TATTTGCTGTCAAGCCAGAAGGAAGCGTCCATTTTTTATATGGGAAGGTGGGTTCGTGAATGGGTCTTTATGTGGCAGAG GGATTTGCTGGATATGGAAATGCAGTGGGTTGATGAGTTGAAGAGGCAAATTGGGAGCTTTTCCCCAAAATCGAGCCAAC AAGATACATGGGTCTGGGTTAAAGAGGGGTCGGGGGTGTTCAGTGTGAAGTCTGCATATGCATTAATTCAAGAAGGGACC GATGCAGAAGATAGTTGGTTCTTTAATAGACTTTGGAAAGCAAAAGCCCATTCTGGTTTGATCGTCCTCGCTTGGAGGGT CTTGATTGATGATAGAGTGCAGACTAGATATGATCTTAACAAGAGGAATGCCTTGCCAAGAAACGCTGCAATAACCTGTG TTTTCTGTTCTTCAGGTGTGGAAAATAGCTTCCATCTTTTTTTTAATTGCCAAGTTTCGTGGAGGATTTGGTCCAAGCTG TTTGGTTGGTTGGGGGTTCAGACTGCAATGCCTTCGTGTGCTATAACTCACTTCAGTCAGTTTTGTGGTATCTTGCTGCG AGGAAATAAGGCTATGCAGGTTCTTATTCTGATTTGGATTGCTACTGTTCATTCGATTTGGCAGTGTATGAATGGAGTAA TTTTTAGAGGGGAGTCATTGGAAATTGGCAGCTTAGTAGACCTGGTGCAATATAAGGTTTGGTTGTGGTTGACCTCGCAT GATAGGAATTTCTCTGCTTCCATTTTTGAGTGGATATCGAATCCTATAATCTGTATTCAATCGCTGCACTAATTGACAGT AGGCGGTGGAGGATGCTCTTCATTGCTGTTGAGTTTTTACATGTTAGTGTGTGTTATGCAGTTGGAATTCCTTCTGTGGA GCCTTTGCCAGCATCAAAAAGTTGCTCTAGCTGGAATTGTCTAATGCTGTTATTTGGAACTTGTTTTATATTACTAAAGG GACGGGTATCATCTATTTTGATTTCAACTTGTGAGGATGATTTCTGGGAAGTTCTCCTTTACTGTTATTGGGTGGAGTCT TTAATATGATGCGTGGGTTTGCTTGGTTTTATATTGCCGAAGGAGGGGTGTACCCATTTGCTGCATCTTGATATCCTTTC ATATCAAGGCTGTAGCTTGCTTTTAAGCATTTGCTGAGTGGAACTCGATGGGTACTTATTTATTGGAGTTCAATTGTAGG AGTATGTTATTGTCAGTTTTGAATATAGCTGGGGCACTTGTCTGTTGATTCTGTCCTGGTACTTTTGATAGGGGAAATGG AGCCTTGGCTTTTGGATTTAAGCTAATTAATTTGGTTTCTAGGTCTCCTTGGAGGTCTTCTAAAGTCTCTTGAGAATTTT TGTACTCTTTTTCTTTCACTAGGTTTTCCCAATGGGGTTTTTCCTAGTAAGGTTTTATTGAGGCAATTTTCTAAAGTCTT TCCTTCAAGGAGGTGTTAATTTTCTGTTGCTCATAGTCTTTTTTCATGCTCTTTCTATTTGTATTGGGTTGAAGTACCAC TTATACTTCATTTCAATATATATACATGGCTTATAAAAAAAATCATAATATTGAAAGAGTAATTCTGATTCTGGTTGATA GATAGTGAGAAAACAAGAAAATTAAAACTCTGGAGAGTGAATTAAAAGAACTTATACTTTTTTGCAGCTGCAAATATGAG TATGAGCTTATCCAAAAGGTCGTGGAAGATGTCACATATCGCTTGCCCCGCTACAATGTTTACCTTAGTTTCAGGGAGAA AGATACTGGCTACTCTTTTACAGGTTTTCTCTATGACACTTTGCATCGACAGGGATTCAGAACCATCATGAAAGATAAAG GATTTGAGAGTGCTGATGAAGACCGAATTTCAGAATCTCTTGTTACAGCAATTGAAAATTCAAGGCTTTCGATTGTTGTT TTGTCTGAAAATTATGCATATTCTTCTTCATGTCTAGATGAACTTGCTATGATTCTTGACCGTGTGAAGGACCAAAACCA TATGGTTTGGCCTATTTTCTATAAGTTGGAGCCATCAGAGGTAAGACATCAAAGAAATAGTTATGACAAAGCCATGACTG AACATGAAAATAAATTTGGAAAAGACTCTGAGAAGGTACAAAAATGGAGGTCAGCCTTGTTTGAAGTCGCCAACTTAAAA GGATGGCATCTAAAATCCAGGTATGCAATTATGCATGCACTGTAATTTCAATTGCTTATTGCAAAAAAAAATTCATATTT CAGGTGCTCCTCTAATTAAAATGATGATATCTGACAATATGTTTAATTAGTTTTTAATTGAAAATCACATACAGTGTTGG AATATTTCAAAAACCCACGTAAACAAACTTCAAATGTGAAAGCAACCCAAGTCATTCATTAACTTTCGGCTGGGTTCAAC TGAAACATGCAAGTTAGTTATCCATTTTCTTAAAACAAAATCAAATTTAAATTAGAAAAAAGTTCCCACTAACACTACTT TTATAAAGAGAGTACGAATATTTCCAATTTTTGCTAAGTTGTATGTACAAGGTCTATTTTACTAGTGCTAGTTGTTAACA ATATGGTTATGAATTGCATTTTTACCATCATATGATATTTTTCATCACTATATATACATAATAATGTATACATTGTTCTT AATAGGATGTTCATTCTTGTATACTGTTCAAAAGGATGTCCATTCTTGCTAAGTGTTTGTGAATTGTTGAATAGAATGTC CATTCTTGTATATTGTTTCAAATGTGACTTTATTTGTAACTAGTTATGTTTGTGATGGTCTACTTTTGTGAATTACTATC ATTCAAGCATAATTTTTATAATTAAATTTGGTGAAATAAAAATCTTGAATTAGAAAGAAAATGGAAATTGTGTATACAAA TGAATAAAAGGCGCCTTGTCCTTTTGTAGGTACGAATATGAGGCTATTGAAAAAATTGTGAATGCAGCCATAAAGTTTTG CTCAAGTGCCAACTAGAATCATGAAGAATATTTGGGGAGCTTCTCTTACCCTAAATTGTCGTCGAACTCGAAGCCAGAAC TAATTAATTTCATAGGTGGTCACTGTCTCAAAAATTCAAAGTGATTGTACTGAAAATTTGTTTTGTAATTGTAAGTGTGT GGTGTGCTTGAATTAAACACAATTTCTAGATAAGGTGTAGCAATAAGTCCTGAGGGAGCGAGCAAGAGTGAGGAGAACTT GGACAGAGATTGCAGAGGAGACAAAGAGAGGTTGAGCAGTGAAGATCTTTCTCTTGCTTCTGTAAAATGATGTTAGCTAC TAGGATCGGTTTGCTTGATTATTGTTATATGAGGAGTTAAATTCCCTCTCTTCAGATTGCTATATATGATAAGATGTGAA TCTGATTTATTATTTAGTTAGTTTTAATTCAATTCTTATATATAAGAGTAAATTACACTCCA
CDS sequence (LotjaGi1g1v0032200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGGAAAGAAACAGTTTATGGTGCCAAATCCTGGTTGCGAATTATAATGGTACTCTTCATCGAATGGATTCCAC TTGGTGGAAGGATTTGAATTCTGTCTGCTTTGGGGAGGAGTGTGGTCGTTGGTTTAATGAGGCGATATGTAGAAGGGTTG GGGAGGGTAGGGATGTAGCTTTCTGGAAGGAGAATTGGACGGGGGCAGGGAGCTTTATCAGCATCTTTCCGAGGCTTTAT TTGCTGTCAAGCCAGAAGGAAGCGTCCATTTTTTATATGGGAAGGTGGGTTCGTGAATGGGTCTTTATGTGGCAGAGGGA TTTGCTGGATATGGAAATGCAGTGGGTTGATGAGTTGAAGAGGCAAATTGGGAGCTTTTCCCCAAAATCGAGCCAACAAG ATACATGGGTCTGGGTTAAAGAGGGGTCGGGGGTGTTCAGTGTGAAGTCTGCATATGCATTAATTCAAGAAGGGACCGAT GCAGAAGATAGTTGGTTCTTTAATAGACTTTGGAAAGCAAAAGCCCATTCTGGTTTGATCGTCCTCGCTTGGAGGGTCTT GATTGATGATAGAGTGCAGACTAGATATGATCTTAACAAGAGGAATGCCTTGCCAAGAAACGCTGCAATAACCTGTGTTT TCTGTTCTTCAGGTGTGGAAAATAGCTTCCATCTTTTTTTTAATTGCCAAGTTTCGTGGAGGATTTGGTCCAAGCTGTTT GGTTGGTTGGGGGTTCAGACTGCAATGCCTTCGTGTGCTATAACTCACTTCAGTCAGTTTTGTGGTATCTTGCTGCGAGG AAATAAGGCTATGCAGGTTCTTATTCTGATTTGGATTGCTACTGTTCATTCGATTTGGCAGTGTATGAATGGAGTAATTT TTAGAGGGGAGTCATTGGAAATTGGCAGCTTAGTAGACCTGGTGCAATATAAGGTTTGGTTGTGGTTGACCTCGCATGAT AGGAATTTCTCTGCTTCCATTTTTGAGTGGATATCGAATCCTATAATCTGTATTCAATCGCTGCACTAA
Protein sequence (LotjaGi1g1v0032200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQERNSLWCQILVANYNGTLHRMDSTWWKDLNSVCFGEECGRWFNEAICRRVGEGRDVAFWKENWTGAGSFISIFPRLY LLSSQKEASIFYMGRWVREWVFMWQRDLLDMEMQWVDELKRQIGSFSPKSSQQDTWVWVKEGSGVFSVKSAYALIQEGTD AEDSWFFNRLWKAKAHSGLIVLAWRVLIDDRVQTRYDLNKRNALPRNAAITCVFCSSGVENSFHLFFNCQVSWRIWSKLF GWLGVQTAMPSCAITHFSQFCGILLRGNKAMQVLILIWIATVHSIWQCMNGVIFRGESLEIGSLVDLVQYKVWLWLTSHD RNFSASIFEWISNPIICIQSLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 45 | 316 | 272 | 1.5E-28 | – | |
| Pfam | 146 | 236 | 91 | 4.6E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0032200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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