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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR026960
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We have found 350 results. Now displaying 1 of 7 with 50 rows per page. This search has taken 5.547s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0202309.1
n.a. reverse transcriptase [Arabidopsis lyrata subsp]. lyrata] gi|158828147|gb|ABW81026.1| chr0 100146097 100147455 -
2 domain predictions
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Lj0g3v0253869.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] gi|140053482|gb|ABO80459.1| chr0 131729944 131730610 +
2 domain predictions
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Lj0g3v0285089.1
n.a. n.a. chr0 147912827 147917041 +
2 domain predictions
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Lj0g3v0285099.1
n.a. contains similarity to reverse trancriptase , related [Medicago truncatula] gi|124359981|gb|ABN07997.1| chr0 147913120 147917041 -
2 domain predictions
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Lj0g3v0349539.1
n.a. glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|224061296|ref|XP_002300413.1| chr0 183541027 183542498 +
2 domain predictions
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Lj1g3v1931350.1
n.a. Uncharacterized protein TCM_040908 [Theobroma cacao] gi|508785638|gb|EOY32894.1| chr1 22959878 22960255 -
2 domain predictions
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Lj1g3v3217940.1
n.a. contains similarity to reverse trancriptase , related [Medicago truncatula] gi|124359981|gb|ABN07997.1| chr1 36465427 36466241 +
2 domain predictions
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Lj2g3v1985430.1
n.a. Ribonuclease H [Medicago truncatula] gi|92870995|gb|ABE80156.1| chr2 29399641 29400371 -
2 domain predictions
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Lj2g3v3151900.1
n.a. H+-transporting two-sector ATPase, alpha/beta subunit, central region, related [Medicago truncatula] gi|92882360|gb|ABE86691.1| chr2 40706208 40708009 +
2 domain predictions
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Lj2g3v3373140.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] gi|124359343|gb|ABD28505.2| chr2 43053292 43054925 -
2 domain predictions
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Lj4g3v1880430.1
n.a. RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana (fragment)] gi|7488319|pir||T00833 chr4 25938693 25939932 +
2 domain predictions
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Lj4g3v2376100.1
n.a. Ribonuclease H [Medicago truncatula] gi|92870995|gb|ABE80156.1| chr4 32879641 32880140 +
2 domain predictions
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Lj5g3v0470310.1
n.a. Putative non-LTR retroelement reverse transcriptase, related [Medicago truncatula] gi|87240935|gb|ABD32793.1| chr5 4595054 4596735 +
2 domain predictions
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Lj6g3v1603980.1
n.a. Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] gi|87162915|gb|ABD28710.1| chr6 18068639 18069952 -
2 domain predictions
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LotjaGi1g1v0000100.1
n.a. Ribonuclease H; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|F4NCK9|F4NCK9_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0000100 LjG1.1_chr1 253738 257330 +
2 domain predictions
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LotjaGi1g1v0002800.1
n.a. LINE-1 reverse transcriptase like; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SE09|A0A151SE09_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0002800 LjG1.1_chr1 671254 676415 -
2 domain predictions
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LotjaGi1g1v0012000_LC.1
n.a. LINE-1 reverse transcriptase like; TAIR: AT3G24255.4 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein; TrEMBL-Plants: tr|A0A151RYW3|A0A151RYW3_CAJCA Transposon TX1 uncharacterized; Found in the gene: LotjaGi1g1v0012000_LC LjG1.1_chr1 1492990 1497101 -
2 domain predictions
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LotjaGi1g1v0015200_LC.1
n.a. LINE-1 reverse transcriptase like; TAIR: AT3G24255.4 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein; TrEMBL-Plants: tr|A0A151RYW3|A0A151RYW3_CAJCA Transposon TX1 uncharacterized; Found in the gene: LotjaGi1g1v0015200_LC LjG1.1_chr1 1960853 1983039 +
2 domain predictions
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LotjaGi1g1v0027600_LC.1
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RPJ0|A0A151RPJ0_CAJCA Retrovirus-related Pol polyprotein LINE-1; Found in the gene: LotjaGi1g1v0027600_LC LjG1.1_chr1 3345903 3352700 -
2 domain predictions
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LotjaGi1g1v0027600_LC.2
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RPJ0|A0A151RPJ0_CAJCA Retrovirus-related Pol polyprotein LINE-1; Found in the gene: LotjaGi1g1v0027600_LC LjG1.1_chr1 3346163 3352701 -
2 domain predictions
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LotjaGi1g1v0027600_LC.3
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RPJ0|A0A151RPJ0_CAJCA Retrovirus-related Pol polyprotein LINE-1; Found in the gene: LotjaGi1g1v0027600_LC LjG1.1_chr1 3346185 3352586 -
2 domain predictions
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LotjaGi1g1v0028400_LC.3
n.a. RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; TAIR: AT3G43940.1 hypothetical protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RYI5|A0A151RYI5_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0028400_LC LjG1.1_chr1 3403013 3403896 -
2 domain predictions
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LotjaGi1g1v0029600_LC.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RPJ0|A0A151RPJ0_CAJCA Retrovirus-related Pol polyprotein LINE-1; Found in the gene: LotjaGi1g1v0029600_LC LjG1.1_chr1 3619182 3620812 -
2 domain predictions
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LotjaGi1g1v0032200.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SXX7|A0A151SXX7_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0032200 LjG1.1_chr1 4096589 4100730 +
2 domain predictions
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LotjaGi1g1v0036100_LC.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); TAIR: AT3G24255.3 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SK44|A0A151SK44_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0036100_LC LjG1.1_chr1 5044572 5046893 -
2 domain predictions
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LotjaGi1g1v0043500_LC.1
n.a. LINE-1 reverse transcriptase like; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151QYZ6|A0A151QYZ6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0043500_LC LjG1.1_chr1 5931676 5936058 -
2 domain predictions
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LotjaGi1g1v0049100_LC.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); TAIR: ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (ChrM); Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|W9QNN7|W9QNN7_9ROSA Uncharacterized protein; Found in the gene: LotjaGi1g1v0049100_LC LjG1.1_chr1 6784053 6786510 -
2 domain predictions
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LotjaGi1g1v0051000_LC.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151TE58|A0A151TE58_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0051000_LC LjG1.1_chr1 7254792 7256291 +
2 domain predictions
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LotjaGi1g1v0058500.1
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A1B5Z863|A0A1B5Z863_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0058500 LjG1.1_chr1 8159462 8170445 +
2 domain predictions
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LotjaGi1g1v0073700.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|F4NCI4|F4NCI4_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0073700 LjG1.1_chr1 10595788 10597967 +
2 domain predictions
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LotjaGi1g1v0091200_LC.1
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q2KI79|ANRA2_BOVIN Ankyrin repeat family A protein 2; TrEMBL-Plants: tr|A0A151RKX0|A0A151RKX0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0091200_LC LjG1.1_chr1 13239801 13240368 -
2 domain predictions
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LotjaGi1g1v0132700_LC.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RRI3|A0A151RRI3_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0132700_LC LjG1.1_chr1 21398230 21400591 +
2 domain predictions
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LotjaGi1g1v0132900_LC.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); TAIR: AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|Q9H489|TSY26_HUMAN Putative testis-specific Y-encoded-like protein 3; TrEMBL-Plants: tr|A0A151RKD2|A0A151RKD2_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0132900_LC LjG1.1_chr1 21421415 21422255 -
2 domain predictions
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LotjaGi1g1v0139100_LC.1
n.a. Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT3G09510.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|V7BHT0|V7BHT0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0139100_LC LjG1.1_chr1 22816512 22818201 -
2 domain predictions
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LotjaGi1g1v0150200.1
n.a. LINE-1 reverse transcriptase like; TAIR: AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A1B5Z791|A0A1B5Z791_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0150200 LjG1.1_chr1 25802294 25805345 -
2 domain predictions
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LotjaGi1g1v0159600_LC.1
n.a. H+-transporting two-sector ATPase, alpha/beta subunit, central region, related; TAIR: AT5G25415.1 hypothetical protein (DUF239); Swiss-Prot: sp|P36600|KAPR_SCHPO cAMP-dependent protein kinase regulatory subunit; TrEMBL-Plants: tr|A0A151RMD0|A0A151RMD0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0159600_LC LjG1.1_chr1 29520399 29521949 -
2 domain predictions
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LotjaGi1g1v0166700_LC.1
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT1G45063.1 copper ion binding / electron carrier protein; Swiss-Prot: sp|P15920|VPP2_MOUSE V-type proton ATPase 116 kDa subunit a isoform 2; TrEMBL-Plants: tr|I3SX42|I3SX42_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0166700_LC LjG1.1_chr1 31647274 31648333 -
2 domain predictions
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LotjaGi1g1v0168300.1
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SE09|A0A151SE09_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0168300 LjG1.1_chr1 31978248 31980375 -
2 domain predictions
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LotjaGi1g1v0169700_LC.1
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SPY7|A0A151SPY7_CAJCA LINE-1 reverse transcriptase isogeny; Found in the gene: LotjaGi1g1v0169700_LC LjG1.1_chr1 32221523 32224916 -
2 domain predictions
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LotjaGi1g1v0171400_LC.1
n.a. LINE-1 reverse transcriptase like; TAIR: AT3G24255.4 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A0B2R0V5|A0A0B2R0V5_GLYSO LINE-1 reverse transcriptase like; Found in the gene: LotjaGi1g1v0171400_LC LjG1.1_chr1 32682757 32684192 +
2 domain predictions
 –
LotjaGi1g1v0175200_LC.1
n.a. Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT3G09510.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q58819|ENDA_METJA tRNA-splicing endonuclease; TrEMBL-Plants: tr|K7LIU3|K7LIU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0175200_LC LjG1.1_chr1 33578917 33580011 +
2 domain predictions
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LotjaGi1g1v0176400_LC.1
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT2G02650.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A2Q2Z7|A2Q2Z7_MEDTR ; Found in the gene: LotjaGi1g1v0176400_LC LjG1.1_chr1 33829917 33830911 -
2 domain predictions
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LotjaGi1g1v0179300_LC.1
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G09510.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9S9P6|U78D1_ARATH UDP-glycosyltransferase 78D1; TrEMBL-Plants: tr|A0A061E711|A0A061E711_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0179300_LC LjG1.1_chr1 34457491 34458305 -
2 domain predictions
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LotjaGi1g1v0183800_LC.1
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A2Q2Z7|A2Q2Z7_MEDTR ; Found in the gene: LotjaGi1g1v0183800_LC LjG1.1_chr1 35863415 35864408 -
2 domain predictions
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LotjaGi1g1v0191400_LC.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|I3T7V1|I3T7V1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0191400_LC LjG1.1_chr1 37802865 37803483 -
2 domain predictions
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LotjaGi1g1v0192200_LC.1
n.a. Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G02650.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151S960|A0A151S960_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0192200_LC LjG1.1_chr1 38005750 38009069 -
2 domain predictions
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LotjaGi1g1v0197000.1
n.a. H+-transporting two-sector ATPase, alpha/beta subunit, central region; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A1B5Z976|A0A1B5Z976_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0197000 LjG1.1_chr1 39857215 39858679 -
2 domain predictions
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LotjaGi1g1v0204300.1
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|F4NCF7|F4NCF7_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0204300 LjG1.1_chr1 44060064 44070528 -
2 domain predictions
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LotjaGi1g1v0207000.1
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT2G02650.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q1PFC5|PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405; TrEMBL-Plants: tr|A0A061ET89|A0A061ET89_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0207000 LjG1.1_chr1 45095313 45099288 -
2 domain predictions
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LotjaGi1g1v0207000.2
n.a. RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT2G02650.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q6GMR7|FAAH2_HUMAN Fatty-acid amide hydrolase 2; TrEMBL-Plants: tr|A0A061ET89|A0A061ET89_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0207000 LjG1.1_chr1 45095313 45099288 -
2 domain predictions
 –