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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0040400 |
| Transcript ID | LotjaGi1g1v0040400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protodermal factor 1; TAIR: AT2G42840.1 protodermal factor 1; Swiss-Prot: sp|Q9S728|PDF1_ARATH Protodermal factor 1; TrEMBL-Plants: tr|A0A151U278|A0A151U278_CAJCA Uncharacterized protein C1orf170 isogeny family; Found in the gene: LotjaGi1g1v0040400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5586449..5593714) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGTGTATATCTCTCTCTTCATACCTATGTATTAAATATGAATGTGTGAAACCCTTTAAATATTAAAGAAGAGAGAA ATGGACACACTATTTAACTCTAGACTCTCATGTGACACGAGAGGGTCCTAATCTGTGGGTGAATACATAGATGATAGATC AACGACAGCAGTTCTTGAGGGCATCATATCACAGATTTGAAAAATCTTTCCAGGGGCAGGTGTCAATCAGCCCTGATAAA TGTAGGTGTGCAGGGAGATTTCGTTGTCAAGTGCATGAAATCATATTGGAGCCTAATTTTATTAGAGGAGAAAGAAATGT CTTTACAGTATAAACTCACTGAGCTTTGAGAACATAAACTACTTTAGAGAAAGCAAAGCTGCAATTAGCACCATAACACA CCACATGGAACACTCAACTAATGAGTGATTTGCATAGAATCCATCTTAAGCTTATTATCAACAAGAGACAAGGTCTGAGA CTCGAGTTGAGTCTACAGCAAGAAGCACTAAATAGTGAAGTAAATGCACCTGCAACATATCAACTAACAAGCATGCTCCT CCACCTGCTAGTATTTACTCCACTTGGTGAACCATTTAAAATCCCCTGTTCCCTCCTCTCTCCAACACATTTCAAAATCC TCAACCCTCCCCTCCTCTCTTTTCTCTGAGTGTTCTAAGCTGTCAGTGATAATGGAGAGGAAGGGAAGCAACTTTGCTTT TCTTACCATGTTCACATTGCTAGCTGGATTGCTTTCTAAGAACATTGTCATCACTGCAATAGCAAGCACCAGTATTGAAG ACCAGAAAAACTATTACACTCCAGACCCAAATGCTGGAACTCCTCCCTCAGGTTTTTCTAGTTCTTCTCATAATTCTACG ACTTCAGTAAACTACTTCATTATACATGCAAAATAAAGGATATAATTATACATGTTTGGAAATCCTTCTTCTACAGTTGA TTCTAAAGAAAGAATCAATTCTGGGCAGAAACTTCCCTCAACTTCTAGGTTTCAGAATTTATTCTGAGAAGAGATAAGCT AATCTAAACATGATAATAGTAGGCCATTTATTTTCAAATTTGAAGGATAAAAATCTCATGAAAAAGCTGTTTTCAATATT TCACTTCTTCCCTAACAGTATACATTGTTTTCATTTCTTGAAGGGTCACATGGTCCACCCTCTCATCACTCTGGAGGTGG TCATGGAAGCAAACCACCCTCTCATCACTCTGGGGGTGGTCATGGAACCCCATCACATGGAGGTGGTGGAAGTCACAAAC CAACCCCATGCACTCCCCCTGGCAGTGGAAGCTACAATCCAACCCCATCAACACCCCCAGGCGGTGGAAGCTATGATCCA ACCCCATCACCACCCTCAGGTGATGGAAGTTACAATCCAACCCCATCAACTCCCCCAGGAAGTGGAAGCTATGATCCAAC CCCATCACCACCCTCAGGTGATGGAAGTTACAATCCAACCCCATCAACTCCCCCAAGAAGTGGAAGCTATGATCCAACCC CATCACCACCCTCCGGTGATGGTAGTTACAATCCAACCCCATCAACTCCCCCGGGCAGCGGAAGCTATGATCCAACACCA ACGCCACCCTCGGGTGGTGACAATTACAATCCAACCCCATCAACTCCCCCAGGAAGTGGAAGCTATGATCCAACCCCATC ACCACCCTCAAGTGATGGAAGTTACAATCCAACCCCATCAACTCCCCCAGGAAGTGGAAGCTATGATCCAACCCCATCAC CACCCTCAAGTGATGGAAGTTACAATCCAACCCCATCAACTCCCCCCGGAAGTGGAAGCTATGATCCAACCCCGTCACCA CCATCAGGAAGTGGCAGTTACACTCCAACTCCAACTCCATCAACACCCTCAGGTGGCAACTGTGCACCTCCATATACACC TTCTGATCCAACACCCACAACTCCATCAACACCATCAACACCTTCAACACCATCAAACCCTCCCTCAGGAGGCAGTGGTT ACTACAACTCACCACCAACTTATGGAGGTGATAGCCCACCTTCTGATCCAACTCCATCAACACCTTCAACACCATCAAGC CCTCCCTCAGGAGGCAGTGGTTACTACAACTCCCCACCAACTTATGGAGGTGATAGCCCCCCAACACCAATCACTCTGAG CCCACCAAGCACCCCAATTGACCCAGGCACCCCCACTATTTCCACACCCCCTTTCCTTCCTGCCCCATCTCCCTTCACTG GTACATGCAAGTAAGTTTATTTCACTATTATTATGAACCAATTATTCCGACAGCTTAAGCTGTTGGGAGAAGACGCATGC ATGATTTTATATTATATTTCTAACAACTACACTGCACTGTAAAACTATCATACCATATACTGTCTCACAGTTGAGTAACC CTTGGTACCTTTTCCTCTAAACTGCAGCTACTGGAATACTCACCCAGGAATCATTTGGGGATTGCTAGGTTGGTGGGGAA CCTTAGGCAATACATTTGGTGCATCTAGCTTTCCAGGGTATGGTGCCGGTCTCAGCTTGCCACAAGCACTTTCCAACACA AGAACTGATGGGCTTGGAGCACTCTACAGAGAAGGAGCAGCTTCCTATCTCAACTCCTTGGTGAACAAGAAGTTCCCTTA CACAACCCAGCAAGTCAGAGAAAGATTTGTTGCATCACTTAGCTCAAATAAGGCTGCAACAACACAAGCCCACCTCTTCA GGATGGCCAATGAGGGGAGAATCAAGCCTAGAGCATGATCTAATTATTTTGTTTTTGTGTCTGTTTATTAAGAATAATAT ATCTAGGACTTCAGCTAAGAGTGTGTTATGTAGGTACTTATCATGTTTTAATTTATCCTAAGATGAATATTGTCTTACTT TACGACTTCATGTTAGCTTTTATGGTTTGAATAAAGTTAATATTTTGTTACTTTTAAGATCTTCATTCAGAATTCAAGTT TAAAGCATTATATATGAAGCATCATTTAACTCTTACTAAGAAAACCTTCTTTTCGTTATATAACAAACACTTAAAATCTA CTAAAATGGCAAGCAAAATCAGAATCTGCGACATTATTCATCAAACAAGAGCTGAGGATTACTCTAAGTATAGCAAGAAC GTTCAACACTATGGATCTGCATCACCTTTTCATTAATGAAGGTCCATCAACATAACCTTTAAAAACAACTAATTATCCAT AAAGAGTAATGCCAAAGAAGCTAGTCTAGAAATGTTGATTGTTCATGCAATATGAATTGCATTCAAGTGATATGCATGAT TGGTTGAGCCTTGCAAACACAAGCAAGGTCTATACTATAAAGGTGTTTAGTATTGTAGGCAATAGTTTTGTTTTCTATAC ATACAAACAAAAGACAATAATAGATGGTCCAACATGCTAGCAGGGCCCCTATATGAAATAGGAATGCTGAGACATATAAT GGCACAGGAAGGATTAAATAGCCATGTGAGGACCAATTAATGTCTTTTTGAGCGCCTTAACAGGCATTGTACAAAGCTGT CCTTTGGTTCAGAAAAATTACACCGGTAGGTAAGCCCTATAAAAAGAAGGTAGTTTTCACGAGCAATGTAGAAAAGGTTC ATTGAATCTTTATTACAAAAAGCACAAAACAACAAATCAAGTCTGCAGCTTACCAAACTTCCCAAATATGAGTAAAGTAT TAACTGAGACCTAAGGGCCACTACTTCTGCTAGTTTAGATCACAATAAGTATTATGTACAATTACTTTACTGGACTTCGA AACCAATGGTATATCTGCATTATGTATTCAATTGTGCTGTGGTAAGGAATATAGCAAAAAGCATTTTATCAGAGTTGTTT TTATAGAGTAAGAGTAAGAATATGTATTATGTATTTGGGTATAGCTTTGTAGTCAACACTACATATAGAAATATCATTAG GGTATCACTTAGTTAAAATAAGCAAAACTGGAGTGGAGCCAGCAGTTTTTACCAATTTATAGATATTATAACTTGCACTT TGTTACTGTAGTTCTTATAAGTTAATTACATCCAAAACCACCTTGATCTTTAACATTGGAAGTGAACTCGTACCTTTGTG CTCTATGAAGGAATAAGCATTTTTTTTTTATAATTTTAGAATGTGTTTTGAGTAAAGATATTCTAAAGGTTTTCTCTCAA ATTAAAAAGTCATTCCATAAAAAATGTAAAAATAAATAAATAGAGCTATATCAAAAGTATGCTTTTTCAATATAAGAAAA GCTTATACAGATTAAGACTAAACTTCAATTTGAAGTTTAGTTTTAAGAATCCACGACATTGAAATGCGCACATGATTATG AAGTTTTAAATGCTTTTAAATGGTTCTGATGACAAACAAAAAATATAAATTCATCAGTATGTGGGCCTGTGAAAGAAATT GGAAAAATAAATTAGAAGACTTGATGCTCAATTTTATGTATGTGGGTGACCACTTACTTAAAGTTCATTTATATTGGCTG AATTTGGAGATTCTAAATTTTATAAAAATGAACTCTTTAATCTTTATATTGAATAGGTAAGGGGTGAATGGTAGTTGAAA ATTCAAGCATGAGGGTGATAAAAGCCATTATTGACATGCTATTCCATATTATCCGAGCTTAATTATGAAAATTAAAATAT AAAAATAAACAAATAAAGACTATAATGGTTGTATTTGGATGTTTTGAATGGTATATAATGAAATACATAAAATGGAAAGA TATGAATTGGAATAAAGTTCCATGCCATTGTTTGGATGTTTAATGATAGAATGAAAGAAAGTTTTTGTTCACATTTCAAG TGGAAGTTACAAAAATTAGAAGTTTATAGTTCCCATACTCCCCTAATTTCAAACACACCAAACCAAAGGAATAAATAATA ATGACAAAATGTAGTTTCACAAGTTATTTCTAGCATGTTTGGATCAGGTTATTTTACTTTACCTCAATCAATTCTAGCAC CCAGAAGCTACTCACAAAAGCTTCTGCCAAAAAATGAGTTGCCTATAGAATCAATTGTAGACAAATTTTCAATTGCCTCC CAATTCGGAGGGAAAGAAAAATAAGGGAATAGATAGATACATAGTGGACCTTAGTCTTGCCAATTCCATCCCTTTTTTAA TCCCTTTCAAAACCTTCAAACAATTACATCCTTTACCATCTAAAACCATTCCGGTCTTTTCCATCTTCACCATCAATCCA AACAAAGCCTAACACTTTTTAATTAAAATACTGTCATAATTCTTGACCAACTGACTAGTTACCTAGGCCAAAATTTTGTT TCTCCACTAAGACTTGTTATATTTCTCCTCTAGTTCAAAAATCATGTCAGCCTCCTTATTATAACTTTTTTCAGACAAGC ATTTCCACATTTTCTTACCAAATATAGCTGTCAAAATGGGTTTTAAGCATAGGGAAAGGTAATCTAGTAATCAAGCTTTC GTAGAATAGAATATTGGGTGGGGTTCATGTGAAAAAATGTTATTTTGAAACACAAATACACCAGAGCATTCAAATTTCAC AGAATAAACGAGAACTTGTGCTTCAAATCCCAAAAGATAAAATAGTAAAAAGATTGCAAGTTTAACAAAATCTAGGATGA GATATAGCAGACTGCTTGCTGAAGTACATATGGTATTTGATACAAAAGATCAGAGGCATACCTTTTAAATTGAAAACCTC TGACAGTAACACCCAGTTAAGAAATTCCAGCCCTTGAAACTGAGTCCCTAACAGAGTCACCACTATAGAAGTCTTTACAT GCAAGTCAATGGATCAGTGGTTGAATTTTAGGAAAATAAGAGGAAGTTAGGTCTCAAATCTCTTGGAATACAAGTGGCTT CAATGACATACTAGTCCTGTTGTTGGCCACAATTCTTTCACAGCAGATAGCAATTTAAACACCGGAGCGCATCACAATCA AGGTCTAATCACCCCATATGAGATTCAAACCATTTAAAAATCTGGTCAGAATGGATGCTAGTCATCTCATGGGAAGCAAA AGCAAGGTTTAGCTCCTCCTGGATATGAGGGACCAGACGCTTATCCAGCGAAAGAGTTTTCTTCTCCTCAACAGCCTTTT CCCATTTTATTCGACGTCCATCTTTCCGCATATATCCATTTTGATCAACAAAGCCCTTTCCCTGAAAGATTTCAAATAAA CTTCTAGAAAGAGTCAGATCAAGACCTGGAATTCTATCAGCTAACGTGTTCGGCGACAATGGGAACTCCATACATTCAAC AACACCAACATCAATCCCTTTACCTTTCAAAACCTCTACATACTCATCTATTTTCTGCTGCCTATAAAGATCCTTAGGCA TGTGAACAAAAAGGGTAGGCGGGTAGTCCTCTTTAACATCCATTTCCTCAAACATCCCCTCAGCAATCATGATTACAATA CTATTAAATTTCACAGCAGTGGCAAGCACAGATACAAAATACCCTCCAGATGAAGCACCCAAAGCCACAAGAGGAAGTTT CTCAAGCTTCCTTCTACCAATCCACCACTCCAAAATGTCTTTAACAACTAACACTTCCTTACCAAAACTCCAACATGTTC TTGCACTTGAAATAGTAATAACAGCAAAACCTTGTGCAAGACCATGAAGTACAAGCAACCTTTCCTCAGGCAAACCAATG CAATTAGGACATTCAGGGGACTTGTCCCAAAAATTGATAGACCTGCCATTGCATCCATGAGCTAAAAACATAACACCTTT AGGTGATTCAGGTACTTGCCATATCAAATCAGTTCCATTCCTGAACTCTCTTGTTGGATGCAATTTCACCAAAGAGTCAA AGCTACTCCATTTTTGTTCAGAAACTTCATAAGCTAAACTGGGTTTTTCACCATCACTGTCATTATGAAGAACTAGAAAG AGAATCACTAGCACTAGCATAAATGCAAGAGAAATGGCAAGCACAGGTACCCGTGAATTCCATAGCTTTGATTTGTGTCC ACGTCTCAACATGCTGCAAAAAGGGTTGATAGCAAAGGTGGAAAAGATTGTTTTTTTACCAAAATTTCTTGATGGAAGAA CAGTAAACAATAGTGGGTCGATTGAACATGATCAATTGCATGATTCAAATCAGAAGGAGATTTGATACAGTGTTGAAAAC ATACTCACATGGAATCATGTGACGAATCTCCGAATTTGATGCCTTCTGAGTGTTGGATTTTGAGGTGATGAATGATGATC CATTCGGTTAATCTCGAAGGTTTTGTGTACTGACATAGTTTGATGAATGATGATGACATGTTCTGT
CDS sequence (LotjaGi1g1v0040400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGGAAGGGAAGCAACTTTGCTTTTCTTACCATGTTCACATTGCTAGCTGGATTGCTTTCTAAGAACATTGTCAT CACTGCAATAGCAAGCACCAGTATTGAAGACCAGAAAAACTATTACACTCCAGACCCAAATGCTGGAACTCCTCCCTCAG GGTCACATGGTCCACCCTCTCATCACTCTGGAGGTGGTCATGGAAGCAAACCACCCTCTCATCACTCTGGGGGTGGTCAT GGAACCCCATCACATGGAGGTGGTGGAAGTCACAAACCAACCCCATGCACTCCCCCTGGCAGTGGAAGCTACAATCCAAC CCCATCAACACCCCCAGGCGGTGGAAGCTATGATCCAACCCCATCACCACCCTCAGGTGATGGAAGTTACAATCCAACCC CATCAACTCCCCCAGGAAGTGGAAGCTATGATCCAACCCCATCACCACCCTCAGGTGATGGAAGTTACAATCCAACCCCA TCAACTCCCCCAAGAAGTGGAAGCTATGATCCAACCCCATCACCACCCTCCGGTGATGGTAGTTACAATCCAACCCCATC AACTCCCCCGGGCAGCGGAAGCTATGATCCAACACCAACGCCACCCTCGGGTGGTGACAATTACAATCCAACCCCATCAA CTCCCCCAGGAAGTGGAAGCTATGATCCAACCCCATCACCACCCTCAAGTGATGGAAGTTACAATCCAACCCCATCAACT CCCCCAGGAAGTGGAAGCTATGATCCAACCCCATCACCACCCTCAAGTGATGGAAGTTACAATCCAACCCCATCAACTCC CCCCGGAAGTGGAAGCTATGATCCAACCCCGTCACCACCATCAGGAAGTGGCAGTTACACTCCAACTCCAACTCCATCAA CACCCTCAGGTGGCAACTGTGCACCTCCATATACACCTTCTGATCCAACACCCACAACTCCATCAACACCATCAACACCT TCAACACCATCAAACCCTCCCTCAGGAGGCAGTGGTTACTACAACTCACCACCAACTTATGGAGGTGATAGCCCACCTTC TGATCCAACTCCATCAACACCTTCAACACCATCAAGCCCTCCCTCAGGAGGCAGTGGTTACTACAACTCCCCACCAACTT ATGGAGGTGATAGCCCCCCAACACCAATCACTCTGAGCCCACCAAGCACCCCAATTGACCCAGGCACCCCCACTATTTCC ACACCCCCTTTCCTTCCTGCCCCATCTCCCTTCACTGGTACATGCAACTACTGGAATACTCACCCAGGAATCATTTGGGG ATTGCTAGGTTGGTGGGGAACCTTAGGCAATACATTTGGTGCATCTAGCTTTCCAGGGTATGGTGCCGGTCTCAGCTTGC CACAAGCACTTTCCAACACAAGAACTGATGGGCTTGGAGCACTCTACAGAGAAGGAGCAGCTTCCTATCTCAACTCCTTG GTGAACAAGAAGTTCCCTTACACAACCCAGCAAGTCAGAGAAAGATTTGTTGCATCACTTAGCTCAAATAAGGCTGCAAC AACACAAGCCCACCTCTTCAGGATGGCCAATGAGGGGAGAATCAAGCCTAGAGCATGA
Protein sequence (LotjaGi1g1v0040400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERKGSNFAFLTMFTLLAGLLSKNIVITAIASTSIEDQKNYYTPDPNAGTPPSGSHGPPSHHSGGGHGSKPPSHHSGGGH GTPSHGGGGSHKPTPCTPPGSGSYNPTPSTPPGGGSYDPTPSPPSGDGSYNPTPSTPPGSGSYDPTPSPPSGDGSYNPTP STPPRSGSYDPTPSPPSGDGSYNPTPSTPPGSGSYDPTPTPPSGGDNYNPTPSTPPGSGSYDPTPSPPSSDGSYNPTPST PPGSGSYDPTPSPPSSDGSYNPTPSTPPGSGSYDPTPSPPSGSGSYTPTPTPSTPSGGNCAPPYTPSDPTPTTPSTPSTP STPSNPPSGGSGYYNSPPTYGGDSPPSDPTPSTPSTPSSPPSGGSGYYNSPPTYGGDSPPTPITLSPPSTPIDPGTPTIS TPPFLPAPSPFTGTCNYWNTHPGIIWGLLGWWGTLGNTFGASSFPGYGAGLSLPQALSNTRTDGLGALYREGAASYLNSL VNKKFPYTTQQVRERFVASLSSNKAATTQAHLFRMANEGRIKPRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| Phobius | 19 | 22 | 4 | - | – | |
| Phobius | 23 | 525 | 503 | - | – | |
| MobiDBLite | 36 | 405 | 370 | - | – | |
| MobiDBLite | 36 | 57 | 22 | - | – | |
| PRINTS | 92 | 108 | 17 | 3.0E-13 | – | |
| MobiDBLite | 99 | 131 | 33 | - | – | |
| PRINTS | 112 | 124 | 13 | 3.0E-13 | – | |
| PRINTS | 129 | 150 | 22 | 3.0E-13 | – | |
| MobiDBLite | 138 | 157 | 20 | - | – | |
| PRINTS | 160 | 176 | 17 | 3.0E-13 | – | |
| MobiDBLite | 164 | 183 | 20 | - | – | |
| PRINTS | 190 | 215 | 26 | 3.0E-13 | – | |
| MobiDBLite | 190 | 209 | 20 | - | – | |
| MobiDBLite | 216 | 235 | 20 | - | – | |
| MobiDBLite | 242 | 261 | 20 | - | – | |
| MobiDBLite | 268 | 286 | 19 | - | – | |
| MobiDBLite | 295 | 324 | 30 | - | – | |
| MobiDBLite | 325 | 341 | 17 | - | – | |
| PANTHER | 341 | 525 | 185 | 3.5E-94 | – | |
| PANTHER | 341 | 525 | 185 | 3.5E-94 | ||
| MobiDBLite | 342 | 358 | 17 | - | – | |
| MobiDBLite | 359 | 374 | 16 | - | – | |
| MobiDBLite | 375 | 405 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0040400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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