Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0041000 |
| Transcript ID | LotjaGi1g1v0041000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | XAP5 circadian timekeeper; TAIR: AT2G21150.1 XAP5 family protein; Swiss-Prot: sp|Q8H110|XCT_ARATH Protein XAP5 CIRCADIAN TIMEKEEPER; TrEMBL-Plants: tr|G7LAJ6|G7LAJ6_MEDTR XAP5 circadian timekeeper; Found in the gene: LotjaGi1g1v0041000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5656212..5659899) extracted from Lotus japonicus Gifu genome v1.2.
TGCTCTTAGAGTTCAAGTTGTTAACATAGCCGCCACAAAGATTCAACAACGAAGAAAGCTTTCGTTTCGTGTTTATCATA CGTTGTTTGCAATTTGTGTCGGAGTGAGAGACGAAGATGTCGGGTATGGGAGACGGGTACGTGGGCACCGCCCAGGACGG CGTTCGGATCCGGCGGCTGGAGAAGCAGAGAGAAGCTGAGCGCCGGAAAATCCAAGAGCTCAAAACCAAGTCCGCCTCCT CCAACGGCCAACCCGGTCTCCTCCAATTCGGTTCCAGCACTTCCGAGGTTTCCATCCCATTCTAGGGTTCCACCGTTTCC TTCCAATTCCCCCAATCCCCATCTTTCAAGTTTCAATCAACCCCTTTTTCTTGTGTTTCAGATTCTGGAAACTGCCTTCA AGAAAGAAACTGTTGGTCTTGTCACCAGAGAGGAGTATGTTGAGAAGGTGAATGCATGAAAATTGAAAAACACACAATTT TTTGATATTATTGTTCTTATTTATTAGCCATAACATGTTCATGTAATCATGTTTTGTTTTGATGTGTAGAGGGTTAACAT TCAGAGCAAAATAGAGGAGGAAGAGAAGGAGAAGCTTCAGAAGCTGCAGCAAGAAGAGGAGGAGCTTCAACTGCAAAAAC GCAAAAAGAGGAAGTTTAAAGGGAATTCTAGATTGTCTTTTGCTGAGGACATTGACAGTGAGGCTCAAGAGGAGGAGGAG GAAAATCACAGTAACCAACCACTACCCCGTGCTTACCCTTTTTTATATTGTTGCTGCTTGAAATTGTAGATTTTCTTAGT TTATCTATGGCCTCGTTTGGAAAAACAGCTTAATTAAGCGAAGTGGCGAGCTTATTCATAAGTTATTTTAAAAAAAATTG AAATTGAGCTATATATAAGCATAAGCTCTTTTTCATAAGCTATCCTGAGTAGCTTATGAAAATAAGCTCAAAACAACTTA TGGTCTACTATAAGCTGTTTGCATAAGCTCTCCCAAACAGGGCCTATATAATGATTTACATGTTGGCAAATTGTTTTATT AAAGAAGAGAATTGTGAATGATTGTTGATTAGTGATGTTACTTACTACAATGTTTCTTGGAAAATATCGAACAGCATTGA ACTTTTCTATGTTGCTGGCAGGTGATGTGGAAACAAATGGACTTCGGCGGGGTAAACTTGGCAAAGACCCCACTGTTGAA ACTAGCTTTCTACCTGACAGGTGCGGTGTCTCTCCGTCTCTTCTTTTGATTACTCGATACCTTGTCTTGCTTGTTGGTTG TTTCCCTAACATACCTGCATAGGAGTGCTGAGGATATTATTCAGTGAGCGAGAGGCTGAGGAGCAAGCTGAGCGTGAAAG GCTGCGCAAGCAGTGGCTCCGGGAGCAGGAGCAAATTCGAAGTCAGTCTTCTTCCTAACTCTGTTTTTAGAAAATGTTGA ATGGTTTTAAAAAAGAAAAGTTTGTGTAAATATGATTATATTAGGGAGAACACATTATGCTTATTTGCCTCTCAAGTGAC ACAAAACAAAACACTGATAGCCACATAAATGCTCATTCTGAATCAAGTTGTTTCTGAACTTCAGATGAGCCTCTTCAAAT CACATACAGTTACTGGGATGGAACTGGCCACAGGCGTGTGATCCAGGCAAGTAAAGAACATGCACATCAACTTACTTTTT GAGTTTTTAGATAAGGATGCATTTACTATATAATGTTATTGGTGTCTCAGCTATTTTATGATGATTCAGGTACGCAAGGG AGACAGCATAGGAGAGTTTCTTCGAGCAATCCAACAGCAACTTGCTCCTGAATTCCGAGAGATTCGAACAACCACAGTAG AAAATTTGTTGTATGTGAAAGAAGACCTTATCATCCCTCACGTATGAACACAACAGTTATTTATAATTTCAGAAAGCCAT GCTATCTTAACATTTTATTCATAAAAGGATATGTTATTTACCCGTTTCCACGTACTATTACAGCAACACAGCTTCTATGA CCTAATTGTGAACAAAGCGAGAGGCAAAAGTGGACCGGTATGTCTCTTTAATAACTCGTTCTTTTATTTATTGTGTTCCT TCTCTTTCAGAAGGCACGCCCTCTAAATTTCCCGCAATTAGTGTGTTTGTGTTTTCTCACTCCCCTACCACTGTGAATAG TTTCTTGAATTGAGAAAGATAATAGTTTCTTCAATTTCTTCAAATTATAATTTCATTCACTTTAGAGGAGGGGGAAAGCA TCAAGGGATTTGAGATGCCTTACTTCCCCCTCTAAAGTCAGGGGTAACTCTGGAGGAATAGAATCCCTTTATGTATATAC ACAATCAGACTCAAAACTGTAGGGGCATGGTAAGGAGGTTATCAGTTGCAGAAAGAAGTCGAATAAGCAAAAATGATTAA GTAAACCATTTTGATACTAAAACAACATTGAGGGAAAATATGAAAATGTTTTTTTTTCTTCTGATTACTTCTTGTTTCTC GGTAATCAGTAGTGCTTTCATATTACTGATGGTGTTTATATGGTTGCTGGTTTTCATATAAATAACATTTGAGTGCTGTC ATCAACTTGGAAGTTTCATGACTTCCTGTAAGGATTTGCAGTGTTGAAGTTACTTATTGTTTTTCCTTATATACAGCTTT TTCATTTTGACGTGCATGAGGATGTAAGAACAACTGCTGATGCCACTATAGAGAAGGATGAGGTATATTTTCTACCTAAA ACCATCACTGTTACTAATTTCAAATTTAGTAGTAAACACAAGACAAATTGCTTGTTTGTCTTTGGATGTTCTAGTAATCT TCTTGCCTTCTGGATTCTTGCTTAATTATCTCACGCTGGTGTTCTTTGTCTCAACCAACAGTCTCATGCTGGTAAGGTTG TGGAAAGGCATTGGTATGAAAAGAACAAGCATATATTTCCTGCTTCAAGATGGGAGGTACTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTTCTCTGTGTATGTTAGTTTGAATGCCGGACTTTATTCCTATTTTTTTGCCTCAAGACTGAGCA TACTTGTGAAGGTGTTTGATATATCACTATTAGGAATATAGTATCTGAGAACTGGCATATTTATGATAGCAGTATCAGAT TAGTGCGCTTGTGATGTATAGCAGCTCATTACATAGCTTCTGATTATGATTGCAATTGTGTTCATCTTCAATTGCAGATA TATGATCCAACGAGGAAATGGGAACGTTATACCATCCACGGAGATTGATTTTGAATAGGGATTTCCTAGCCCTGACCTTT AATTTGGCCATCAGCTAAGCCAGATTATGCCTATTGCACACCTTGATGATGTTGGCTTTATATCATTAGTAATTTCAGTG GTTTTTTTATCTATGATTGTTGAGACTTGGACAATTAATCGGATTTATATTGAAGTGGACAATTTCATGTTTATGTCATG TGTGTCAATGGATTAGGGTTTTGTCTATGTCATGTGTGTGAGAAAATTTAATTGCAAGTGTCTTACGTGTTGACACTCCG AGGCACGTCAATGTGGAACCTACGCGTGTAAACATTTAATTTGACGTGGTTGAAGCTCGTTACTTGGTAGGGTAATGCAT AGTTGAAAATATGCTAAGTTGTAACTTTACCATTTTTCTTCGTCATTTTTACCTTTTAGAAATACAAAATAATAAAATTG TTTGCAAG
CDS sequence (LotjaGi1g1v0041000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGGTATGGGAGACGGGTACGTGGGCACCGCCCAGGACGGCGTTCGGATCCGGCGGCTGGAGAAGCAGAGAGAAGC TGAGCGCCGGAAAATCCAAGAGCTCAAAACCAAGTCCGCCTCCTCCAACGGCCAACCCGGTCTCCTCCAATTCGGTTCCA GCACTTCCGAGATTCTGGAAACTGCCTTCAAGAAAGAAACTGTTGGTCTTGTCACCAGAGAGGAGTATGTTGAGAAGAGG GTTAACATTCAGAGCAAAATAGAGGAGGAAGAGAAGGAGAAGCTTCAGAAGCTGCAGCAAGAAGAGGAGGAGCTTCAACT GCAAAAACGCAAAAAGAGGAAGTTTAAAGGGAATTCTAGATTGTCTTTTGCTGAGGACATTGACAGTGAGGCTCAAGAGG AGGAGGAGGAAAATCACAGTGATGTGGAAACAAATGGACTTCGGCGGGGTAAACTTGGCAAAGACCCCACTGTTGAAACT AGCTTTCTACCTGACAGTGAGCGAGAGGCTGAGGAGCAAGCTGAGCGTGAAAGGCTGCGCAAGCAGTGGCTCCGGGAGCA GGAGCAAATTCGAAATGAGCCTCTTCAAATCACATACAGTTACTGGGATGGAACTGGCCACAGGCGTGTGATCCAGGTAC GCAAGGGAGACAGCATAGGAGAGTTTCTTCGAGCAATCCAACAGCAACTTGCTCCTGAATTCCGAGAGATTCGAACAACC ACAGTAGAAAATTTGTTGTATGTGAAAGAAGACCTTATCATCCCTCACCAACACAGCTTCTATGACCTAATTGTGAACAA AGCGAGAGGCAAAAGTGGACCGCTTTTTCATTTTGACGTGCATGAGGATGTAAGAACAACTGCTGATGCCACTATAGAGA AGGATGAGTCTCATGCTGGTAAGGTTGTGGAAAGGCATTGGTATGAAAAGAACAAGCATATATTTCCTGCTTCAAGATGG GAGATATATGATCCAACGAGGAAATGGGAACGTTATACCATCCACGGAGATTGA
Protein sequence (LotjaGi1g1v0041000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGMGDGYVGTAQDGVRIRRLEKQREAERRKIQELKTKSASSNGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKR VNIQSKIEEEEKEKLQKLQQEEEELQLQKRKKRKFKGNSRLSFAEDIDSEAQEEEEENHSDVETNGLRRGKLGKDPTVET SFLPDSEREAEEQAERERLRKQWLREQEQIRNEPLQITYSYWDGTGHRRVIQVRKGDSIGEFLRAIQQQLAPEFREIRTT TVENLLYVKEDLIIPHQHSFYDLIVNKARGKSGPLFHFDVHEDVRTTADATIEKDESHAGKVVERHWYEKNKHIFPASRW EIYDPTRKWERYTIHGD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 51 | 51 | - | – | |
| PANTHER | 4 | 337 | 334 | 8.8E-156 | ||
| PANTHER | 4 | 337 | 334 | 8.8E-156 | – | |
| MobiDBLite | 16 | 36 | 21 | - | – | |
| Coils | 18 | 38 | 21 | - | – | |
| MobiDBLite | 37 | 51 | 15 | - | – | |
| Coils | 73 | 118 | 46 | - | – | |
| Pfam | 90 | 333 | 244 | 1.3E-76 | ||
| MobiDBLite | 123 | 174 | 52 | - | – | |
| MobiDBLite | 141 | 174 | 34 | - | – | |
| Coils | 167 | 187 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi1g1v0041000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…