Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR007005

Source: InterPro

Description

IPR007005 is a XAP5 protein.

<p>These proteins are found in a wide range of eukaryotes. They are nuclear proteins, suggested to play a role in the spliceosome complex [[cite:PUB00095489]]. XAP5 from Arabidopsis thaliana has been shown to be involved in light regulation of the circadian clock and photomorphogenesis [[cite:PUB00057419]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Associated Lotus transcripts 6

Transcript Name Description Predicted domains Domain count
Lj2g3v3108420.1
– Protein XAP5 CIRCADIAN TIMEKEEPER [Medicago truncatula] gi|357521279|ref|XP_003630928.1|
Domains
4
Lj2g3v3108420.2
– Protein XAP5 CIRCADIAN TIMEKEEPER [Medicago truncatula] gi|357521279|ref|XP_003630928.1|
Domains
5
Lj4g3v3113000.1
– PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER-like [Glycine max] gi|356513101|ref|XP_003525252.1|
Domains
10
Lj4g3v3113000.3
– Protein XAP5 CIRCADIAN TIMEKEEPER [Medicago truncatula] gi|357521279|ref|XP_003630928.1|
Domains
4
LotjaGi1g1v0041000.1
– XAP5 circadian timekeeper; TAIR: AT2G21150.1 XAP5 family protein; Swiss-Prot: sp|Q8H110|XCT_ARATH Protein XAP5 CIRCADIAN TIMEKEEPER; TrEMBL-Plants: tr|G7LAJ6|G7LAJ6_MEDTR XAP5 circadian timekeeper; Found in the gene: LotjaGi1g1v0041000
Domains
6
LotjaGi4g1v0456300.1
– XAP5 circadian timekeeper; TAIR: AT2G21150.1 XAP5 family protein; Swiss-Prot: sp|Q8H110|XCT_ARATH Protein XAP5 CIRCADIAN TIMEKEEPER; TrEMBL-Plants: tr|G7LAJ6|G7LAJ6_MEDTR XAP5 circadian timekeeper; Found in the gene: LotjaGi4g1v0456300
Domains
6

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 16.67