Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0041500 |
| Transcript ID | LotjaGi1g1v0041500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycerol-3-phosphate acyltransferase; TAIR: AT1G06520.1 glycerol-3-phosphate acyltransferase 1; Swiss-Prot: sp|Q9SHJ5|GPAT1_ARATH Glycerol-3-phosphate acyltransferase 1; TrEMBL-Plants: tr|I1M6X4|I1M6X4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0041500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5694527..5697114) extracted from Lotus japonicus Gifu genome v1.2.
CAGCAACATGTAGGAAGCACTTCCATGAAAAAAAAAATGAAAGGGTGAATGTCTAAGAAAATATAAAAAGTTAAAGGTGA AGTTAATGCCTAACTAAATTCTACATTAACTTTTAATGAGTCTATAAATATTCTGGGCTCACACTTCCTCATCACTCCAG ATAGGCACACACATTAGCCTTCTTTTACTTGTTCCAGTATTTTCTTCTTCCTCATATCTCCTTCTCAAACACAATCAACC AAAAAAGAATTTTGAGAGAGCAAGATGTTCCCAATTGTGCTTCTCAAGCTTGTGGAATGGATTTTGTACCAGCTTCTTGC TAACTCTTGTTATAGAGCTGCAAGAAAAGTGAAAAGTTTTGGTTTTCATTTGGGACATCTTTCACCTAAAACACCACACC AACCTTCCTCTTTCCCTAGTATTACCAAATGTGACTTGGAGAGTAGAGGATCACAATCACAAACACTTGTTTGTGACATT CATAGAGTTATACTGAGGTCCCACTCCTTTTTTCCTTACTTCATGCTTGTTGCCTTTGAAGGTGGCAGCATTTTTAGAGC ATTTGTTCTGCTTCTGTCTTGTCCTGTACTTTGGATTTTAGACCATGAGTTGAAGCTTAAGGTCATGACTTTCATAACAT TCTCTGGTTTAAGAGTGAAGAACATGGATAACATTTCAAGGGCAGTTTTACCCAAGTTTTACTTGGAGAATCTCAACCTC CATGCATATGAGGTTCTGGCTTCAGCAGGGTCTAAAGTTGTGTTCACAAGTGTGCCTAGAGTGATGGTGGAAGGGTTTCT CAAGGAGTATTTGAGTGTCGGCGCTGTTATCGGCACTGAGTTGCATGCTGTTGGTGGCTACTTCACTGGTTTGCTTGCCG GCTCAGGCTTACTTGTGAAGCATAGAGCTCTCAAGGAATATTTTGGAGATAGAAAGCCTGATATTGGAATAGGAAGCTCA AGTGTTCATGATCATCATCTTCTCATTTCCCTTTGCAAGGTAAGTCTCAAGTTAATGATCTTGAATTTAGTAACCTTTCA CATTGAAAAAATTGAGTTTAAAAAAGGCAAACATGATGTTATAAAGCTCCCGCTATGCGTGAGGTCTAGAAAGGTGCCGG GCCCACTTCGTGGATCTGATGTATGCATGCTCGAACCTGTAACCGCAAAGTAACACATGGTAGTAACTGTACTTGCGCCG AGACTTGTCTTCTATTTAAAATAATTAGACCACTTAAAGTAAAATAAAAAAAGGTTAAGCAAAAAGCTAATTAAACACAA AACCTGTTATTTTTCAGGTGTGCATTGTTATCTCCTCTTTTGACATGGCGATTTTTTTTGCATTTTAGTAGACATGTTTT GATTTCCATCGATGTATTAATGTCTAATTCCAGCTACTTGAAAATGATACAGGAAGCTTATGTTGTGAACAATGATGACA GCAAGAACAGTGTGATGCCAAGGGACAAATATCCAAAGCCTCTAATATTCCATGATGGAAGGCTTGCATTCTTGCCTACT CCCTCAGCAACACTCTGCATGTTCATGTGGCTTCCCATTGGGATTCTTTTGGCAATTTACAGAATCCTCCTTGGTGTTCT CCTTCCTTATGAAATGGCATTGATGTTAGGTGTTTGGAGTGGCATAGATATTCAAGTCAAAGGCTCTATGATCCCTGAAA GATCAGAACCTAACAAAGGGGTTCTCTATGTTTGCACACACAGGACTCTCTTGGATCCTGTTTTCCTCAGCACATGTTTG GCAAAGCCTTTGACTGCAGTCACATACAGCTTGAGCAAAGTTTCTGAGTTCATAAGTCCAATTAGAACAGTGAGATTGAC AAGGGATAGAAAACAAGATGGTGAAACCATGCAGAGGCTTCTAAAAGAAGGGGATTTGGTGGTGTGTCCTGAAGGAACAA CTTGTAGGGAGCCATATTTGTTAAGATTCAGCTCATTGTTTGCTGAATTAGCTGATGAGATTGTCCCTGTGGCTATGAAT GCTCATGTTAACATGTTCTATGGGACCACAGCAAGTGGTTTGAAGTGTTTGGACCCAATTTTCTTCTTCATGAATCCAAG GCCTAGTTATCATGTTGAGATTCTTGGAAAGCTGCCTAAGGAACTCACATGTGCTGGAGGAAAGTCAAGCTTTGATGTGG CAAATTATATACAGAAAAAACTGGGTGATGCTTTGGGATTTGAGTGCACCACACTCACTAGGAGGGATAAGTACATGATG CTAGCAGGGAATGATGGGAGTGTTGTTCAACAAGAGAAGTGGAAAAAGTGCTTGTGAATCTTGATGATGTTACTCTTTAT ATCTTGTTTTGTACACTTGTGTTTTGGTTTCACTTTTTGTGGTTTTGTTTGTTATTGTTGGATGACATTTATGATTGTGA TTTTAAGGTAGTGTCAAGCATATTTAGGTACACTTGAGACTCTTAAATGAAAGCTCAGCCTTTGTTGATCGAGAAATGTA CCAATTCCCTATTCCACACAAAAAAAGGTGAACATAGGATATAGTTTACCTGAATTCTAGCTATACATACACATCTAGAA TGAAATATTTTTTCCCGTTTCAAGACAA
CDS sequence (LotjaGi1g1v0041500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCCAATTGTGCTTCTCAAGCTTGTGGAATGGATTTTGTACCAGCTTCTTGCTAACTCTTGTTATAGAGCTGCAAG AAAAGTGAAAAGTTTTGGTTTTCATTTGGGACATCTTTCACCTAAAACACCACACCAACCTTCCTCTTTCCCTAGTATTA CCAAATGTGACTTGGAGAGTAGAGGATCACAATCACAAACACTTGTTTGTGACATTCATAGAGTTATACTGAGGTCCCAC TCCTTTTTTCCTTACTTCATGCTTGTTGCCTTTGAAGGTGGCAGCATTTTTAGAGCATTTGTTCTGCTTCTGTCTTGTCC TGTACTTTGGATTTTAGACCATGAGTTGAAGCTTAAGGTCATGACTTTCATAACATTCTCTGGTTTAAGAGTGAAGAACA TGGATAACATTTCAAGGGCAGTTTTACCCAAGTTTTACTTGGAGAATCTCAACCTCCATGCATATGAGGTTCTGGCTTCA GCAGGGTCTAAAGTTGTGTTCACAAGTGTGCCTAGAGTGATGGTGGAAGGGTTTCTCAAGGAGTATTTGAGTGTCGGCGC TGTTATCGGCACTGAGTTGCATGCTGTTGGTGGCTACTTCACTGGTTTGCTTGCCGGCTCAGGCTTACTTGTGAAGCATA GAGCTCTCAAGGAATATTTTGGAGATAGAAAGCCTGATATTGGAATAGGAAGCTCAAGTGTTCATGATCATCATCTTCTC ATTTCCCTTTGCAAGGAAGCTTATGTTGTGAACAATGATGACAGCAAGAACAGTGTGATGCCAAGGGACAAATATCCAAA GCCTCTAATATTCCATGATGGAAGGCTTGCATTCTTGCCTACTCCCTCAGCAACACTCTGCATGTTCATGTGGCTTCCCA TTGGGATTCTTTTGGCAATTTACAGAATCCTCCTTGGTGTTCTCCTTCCTTATGAAATGGCATTGATGTTAGGTGTTTGG AGTGGCATAGATATTCAAGTCAAAGGCTCTATGATCCCTGAAAGATCAGAACCTAACAAAGGGGTTCTCTATGTTTGCAC ACACAGGACTCTCTTGGATCCTGTTTTCCTCAGCACATGTTTGGCAAAGCCTTTGACTGCAGTCACATACAGCTTGAGCA AAGTTTCTGAGTTCATAAGTCCAATTAGAACAGTGAGATTGACAAGGGATAGAAAACAAGATGGTGAAACCATGCAGAGG CTTCTAAAAGAAGGGGATTTGGTGGTGTGTCCTGAAGGAACAACTTGTAGGGAGCCATATTTGTTAAGATTCAGCTCATT GTTTGCTGAATTAGCTGATGAGATTGTCCCTGTGGCTATGAATGCTCATGTTAACATGTTCTATGGGACCACAGCAAGTG GTTTGAAGTGTTTGGACCCAATTTTCTTCTTCATGAATCCAAGGCCTAGTTATCATGTTGAGATTCTTGGAAAGCTGCCT AAGGAACTCACATGTGCTGGAGGAAAGTCAAGCTTTGATGTGGCAAATTATATACAGAAAAAACTGGGTGATGCTTTGGG ATTTGAGTGCACCACACTCACTAGGAGGGATAAGTACATGATGCTAGCAGGGAATGATGGGAGTGTTGTTCAACAAGAGA AGTGGAAAAAGTGCTTGTGA
Protein sequence (LotjaGi1g1v0041500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPIVLLKLVEWILYQLLANSCYRAARKVKSFGFHLGHLSPKTPHQPSSFPSITKCDLESRGSQSQTLVCDIHRVILRSH SFFPYFMLVAFEGGSIFRAFVLLLSCPVLWILDHELKLKVMTFITFSGLRVKNMDNISRAVLPKFYLENLNLHAYEVLAS AGSKVVFTSVPRVMVEGFLKEYLSVGAVIGTELHAVGGYFTGLLAGSGLLVKHRALKEYFGDRKPDIGIGSSSVHDHHLL ISLCKEAYVVNNDDSKNSVMPRDKYPKPLIFHDGRLAFLPTPSATLCMFMWLPIGILLAIYRILLGVLLPYEMALMLGVW SGIDIQVKGSMIPERSEPNKGVLYVCTHRTLLDPVFLSTCLAKPLTAVTYSLSKVSEFISPIRTVRLTRDRKQDGETMQR LLKEGDLVVCPEGTTCREPYLLRFSSLFAELADEIVPVAMNAHVNMFYGTTASGLKCLDPIFFFMNPRPSYHVEILGKLP KELTCAGGKSSFDVANYIQKKLGDALGFECTTLTRRDKYMMLAGNDGSVVQQEKWKKCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 84 | 84 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| PANTHER | 13 | 533 | 521 | 1.4E-274 | – | |
| PANTHER | 13 | 533 | 521 | 1.4E-274 | – | |
| Phobius | 85 | 112 | 28 | - | – | |
| TMHMM | 90 | 112 | 23 | - | – | |
| Phobius | 113 | 275 | 163 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| SUPERFAMILY | 264 | 527 | 264 | 1.7E-29 | – | |
| TMHMM | 276 | 298 | 23 | - | – | |
| Phobius | 276 | 294 | 19 | - | – | |
| Phobius | 295 | 299 | 5 | - | – | |
| Phobius | 300 | 323 | 24 | - | – | |
| TMHMM | 303 | 325 | 23 | - | – | |
| CDD | 322 | 502 | 181 | 3.19546E-27 | – | |
| Phobius | 324 | 539 | 216 | - | – | |
| Pfam | 327 | 435 | 109 | 1.9E-9 | ||
| SMART | 342 | 443 | 102 | 4.4E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transferase activity, transferring acyl groups | Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0041500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…