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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0042600 |
| Transcript ID | LotjaGi1g1v0042600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G18170.1 WRKY DNA-binding protein 28; Swiss-Prot: sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28; TrEMBL-Plants: tr|I1M6Y0|I1M6Y0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0042600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5844083..5847364) extracted from Lotus japonicus Gifu genome v1.2.
CAACAATCAAATTAAAGAGAGAAATATAGTGTAAAAGAGCAGAAGGAATAAAAGCAAGAAGAAAAACAAAGTTCAAACCC AAAAGCTCCCTTTATTTCCCATAACAAGCAACAACCATCAAATTAAGTCTTCAGCTGAAATTTCATTATCAAATTAAGCT ACCTTTATCTTTTCTTGTCCTTTTTCCCTCACCTTCTCTTCCCTCTCTCTTCTTCTCTTCCATGGCGAATAATGAGAAGG ATCGTTATGATGACCACCCCTTCTATCATCACAACCACCATGAACATCATGAACTCAATCACTTACCATCAAGCTTTCCG TCACAAAACTTTCAAGGGTTTGATCCCTCTCATGCCACTTTCAATGACTACTTACATGGTTCCATGGACTACAACACCCT CTCAAGAGCCTTTGACTTGTCTTGCTCGTCACCTGAAGTGATCTCCTCCTCCATTGATGAAAACTCCAAGAAACCAAGTG TAGGAGACTCAGTGGGCATGCCGACACCCAATTCCTCAGTCTCTTGCTCATCTAATGAAGCTGAACCTGTAGCAGAAGAA GACTCAACCAAAAGCAAGAAAGATAAGGAGCCAAAAGGGTGTGAAGATGAAGATGAAGGATCTAAGAAAGAGTAGGTTTT CCACTTCTTCTTCTCTAACTCTATCTTCATGTTTTTTGATAGATCAATGAAAAGGGTGAAAATATTTTTTAATTTCTTTC TTCCAAGACTTTATTCAATTGATGAGTAGGACATCATTAACTTATATGTTGTTTCATTAAGGTAGATCGAATTTTGAATT TTCTTTTGAATTATTACTAATGCAATCATATATACTATACCTATAACCACCAAGATTGTAATCCATTGTTTAGTATTATT CTAGATGTCTTGAATTTGAGTTTCTGTAAATGTTGTTGCGTTAAATACTTGGTTAAGATAGCTTTACAGCTCATGGTGAT CCTTCGCGGCTCAAACATGATTCATTCAATCTAGAAACTGAATTGTCAAATCTTGTTACACTATCTCTTGATACTATACA TGCAGTCCTGTATGAATGTTGTGTAGATTTTTGTGTGTGACTAAAATGGTGAAAGAAGGATTGCACTTAACCCTAATATA TATATATATATATATTTCGTGTCTCAGTTTAGGTGGATTTTATTCTATCTGCCATATATATGTATATAATTAATATATTG CTGTGAATTATTTTGACTAATGTTTTGGAGGTACGTTTTAGGAACAATCCTAAAAAGAAAGAGAAAAAGGCAAGAGAGCC ACGGTTTGCATTCTTGACTAAAAGTGAGATCGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCAG TCAAGAATAGTCCTTACCCAAGGTTCATTTTTTTCTTTCTTTCTAATTTGGAAATTTCTTATCTAATTGGGTACGTTAAC CTTTCAAACCAAAATGATGAAAGGATAGTGGAATTTGTATGCCAAAATCATGAATACATTGACATACAAAGTCTTTTACT TATCTATATATTCTTTGTCATATAATGATTCATTAATGTCCTTGTCCTATCAAAGGTTTTGTACCGGCTTATTTCTATGT ACTTATTGCGGCTAGCTTGTTCTTTTATCATCAACTCTCTAATAATGTAATTGGAGACATATCATATGTATGATCATATC ACATGTATATTATAGTCAACAATGCAAAAATGTTTACCAACAAGTCATACAACACAGTTGTTAGATATATAGTTGGAGTT CTTCAACATGTGATGGAGGGTTCGACATCTGGGTAATGTGTATTGAAAAAGATTTTTTAGAATTGTTTCTTGTCAATATA ATTGCATACTAGCTTAATTAACATTATAATGTAAACCTAGCTAATAGGTGTACATTTTATTTATAATGCAGGAGTTATTA CAGGTGCACAACTCAGAAGTGCACTGTGAAGAAAAGGGTGGAGAGGTCATTCCAAGACCCATCAATTGTGATGACAACGT ATGAAGGGCAGCATAACCATCACTGCCCAGCCACACTCAGGGGCAATGCTGTCAGCATGTTTTCCTCACCTTCTCTTTTT GGTTCTTCCACATCTATGGGATCATTGGGATCAACCTTACCCCAAAATTTCTATGCTCAGTTGCTTCCAAGTTATAGCCA AGGACATGATGGTCATCACGAAAACCCCACGTTTCACCAAAATGACCATTTCAATCGCCATTCCCAACCGCAGCGCCAAC CGGAGCTGCAGCTACAGCAGAACCAGCAACTGCAGTTCCAACACCCTCATGACTATGGTTTGTTGCAAGATCTACTACCA TCATTTCCAGGCAAACAAGAGCAATAAACTACCTATTACCATGCTTAATTTTATTTTTGTCGGAATCAATTTTGATGCCT AAAAGTTATCTACTGATGAAACTTTTTCTCAGAATTGATTTTGACTTAGAATCAATTATATTAATTAGAATTTTCAAGCA TGCACACTATAACTCACCCCAATGACCCCATTTCTATTTATAGTATACAATGGGGCTTGTAATGTATGTAGTAATTATTA TGTAGTAGCTTAATTCCCTATACTAAGTCATGTACCAAGATTTGTATGGATGACAGGTCTCAGAGGGCCTTATGTTAGAA CTATGACATTGATCTTAATTCTTGAATGAGAGAGTTTAGAAAATTTGGACAACAATATTGTTAGAGATATGGACGGTGCA TGTATTTTCCATTTGAGTACTGATTTGCAAGCTGCGAATATGTGGTTTGACAAAGACAGTTTGGGTACAATATATATATG ATTGATCTTTGTCAGTGAAAAGTATTGAAAGGACATGATGGGTTCATGAACTCAGTTAAAGGAGGTGTGCTAGAATATGC AACTGAAAAAGGGAAGGTTTATATTCAGTGGCAGATGGCATCATCAGCTAAAATTGCTGCGAGCTTAATCAAAATATTTC TGAACTATTTTTTGCACTAGCGATTCCTAGACTCTAGTGCGTTCGGACATACATTCGAGAACACATTTTTCCTGAGATCA CATTTAGAGCCTAGACTATTAGAAATGTGGATGTTTGAAGCATGTCCGCACAGTGGGTTGTGGTCTAAAGATCTCTTTGC TATTTTGGTGATGAGTTGTATAACTAATTTGAGGTATGTGTATTAGTATGCACTACTAGCCAGCCAGACTAGTGTAATTA AGATAAGTGTGTATTGAAAATTATATGTACTTTATTATTTGACTTTTTATAAATAAAAGTTATGTACACTTCATGTGGAT AA
CDS sequence (LotjaGi1g1v0042600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAATAATGAGAAGGATCGTTATGATGACCACCCCTTCTATCATCACAACCACCATGAACATCATGAACTCAATCA CTTACCATCAAGCTTTCCGTCACAAAACTTTCAAGGGTTTGATCCCTCTCATGCCACTTTCAATGACTACTTACATGGTT CCATGGACTACAACACCCTCTCAAGAGCCTTTGACTTGTCTTGCTCGTCACCTGAAGTGATCTCCTCCTCCATTGATGAA AACTCCAAGAAACCAAGTGTAGGAGACTCAGTGGGCATGCCGACACCCAATTCCTCAGTCTCTTGCTCATCTAATGAAGC TGAACCTGTAGCAGAAGAAGACTCAACCAAAAGCAAGAAAGATAAGGAGCCAAAAGGGTGTGAAGATGAAGATGAAGGAT CTAAGAAAGAGAACAATCCTAAAAAGAAAGAGAAAAAGGCAAGAGAGCCACGGTTTGCATTCTTGACTAAAAGTGAGATC GATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAATAGTCCTTACCCAAGGAGTTATTA CAGGTGCACAACTCAGAAGTGCACTGTGAAGAAAAGGGTGGAGAGGTCATTCCAAGACCCATCAATTGTGATGACAACGT ATGAAGGGCAGCATAACCATCACTGCCCAGCCACACTCAGGGGCAATGCTGTCAGCATGTTTTCCTCACCTTCTCTTTTT GGTTCTTCCACATCTATGGGATCATTGGGATCAACCTTACCCCAAAATTTCTATGCTCAGTTGCTTCCAAGTTATAGCCA AGGACATGATGGTCATCACGAAAACCCCACGTTTCACCAAAATGACCATTTCAATCGCCATTCCCAACCGCAGCGCCAAC CGGAGCTGCAGCTACAGCAGAACCAGCAACTGCAGTTCCAACACCCTCATGACTATGGTTTGTTGCAAGATCTACTACCA TCATTTCCAGGCAAACAAGAGCAATAA
Protein sequence (LotjaGi1g1v0042600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANNEKDRYDDHPFYHHNHHEHHELNHLPSSFPSQNFQGFDPSHATFNDYLHGSMDYNTLSRAFDLSCSSPEVISSSIDE NSKKPSVGDSVGMPTPNSSVSCSSNEAEPVAEEDSTKSKKDKEPKGCEDEDEGSKKENNPKKKEKKAREPRFAFLTKSEI DHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVMTTYEGQHNHHCPATLRGNAVSMFSSPSLF GSSTSMGSLGSTLPQNFYAQLLPSYSQGHDGHHENPTFHQNDHFNRHSQPQRQPELQLQQNQQLQFQHPHDYGLLQDLLP SFPGKQEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 21 | 285 | 265 | 6.9E-105 | – | |
| PANTHER | 21 | 285 | 265 | 6.9E-105 | – | |
| MobiDBLite | 75 | 150 | 76 | - | – | |
| MobiDBLite | 91 | 109 | 19 | - | – | |
| MobiDBLite | 110 | 150 | 41 | - | – | |
| Gene3D | 149 | 224 | 76 | 4.0E-33 | ||
| SUPERFAMILY | 156 | 223 | 68 | 5.62E-29 | ||
| ProSiteProfiles | 158 | 223 | 66 | 31.743 | ||
| SMART | 163 | 222 | 60 | 1.2E-38 | ||
| Pfam | 164 | 220 | 57 | 1.1E-25 | ||
| MobiDBLite | 264 | 304 | 41 | - | – | |
| MobiDBLite | 272 | 289 | 18 | - | – | |
| MobiDBLite | 290 | 304 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0042600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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