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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0043000 |
| Transcript ID | LotjaGi1g1v0043000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Conserved oligomeric Golgi complex subunit 5; TAIR: AT1G67930.1 Golgi transport complex protein-like protein; Swiss-Prot: sp|Q9UP83|COG5_HUMAN Conserved oligomeric Golgi complex subunit 5; TrEMBL-Plants: tr|I1JJ41|I1JJ41_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0043000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5888951..5895104) extracted from Lotus japonicus Gifu genome v1.2.
CATAAAATTAATGACCCAAGCACAAATAATATTCATTTTTTTCTTTATAAAAACAATAGTGAGGGAAATAAAAGAAAGAG ACACTAGTGAGTAGTTTCATTCATTCATCACCAAATGGCCTCACCAGCGGCGGCGAGGTCGCCGGCGTCCACCGTCGCTT CTCCGATCCAACGCCTCTCCACTTTCAAAAACCCCTCCACCGCCACCCCATTCGCCGCCACCGCATCCTCCGCACTCGAT TCCCTAGCCTCCGATCCCATCTTCTCCGCATTCCTCTCACCCTCCTTCTCCTCCACCTCATTCTCCGCCGCCGCTCTCTC CTCCGGCTCCCCTGCCTCCACCGCCGAGAAGCTCCACAACGCGATCCGCCTCCTCGAGAATCAGCTCCGCTCCGAGGTGC TTTCCCGCCACGACGACCTCCTCTCCCAGCTCTCCTCCCTCCACCACGCCGACCACGCCCTCTCCACCCTCCGATCCTCA CTCTCCTCCCTCCAATCCTCCCTCCGCCGCCTCCGATCCGAACTCTCCGAGCCTCACCGCTCCATCGCTACAAAAACCTC CCAGCTCTCCAACCTCCACCGAACCACCGAGCTCCTCCAGCACTCCGTCCGCGCCCTCCGCCTCTCCAAGAAGCTCCGCG ACCTCATGGCAGCCGCAGATCCGGAAAAGCTCGACCTCGCCAAGGCCGCGCAGTTCCACTCCGAGATCCTGAGCCTCTGC GACGAGTACGACCTCGCCGGCATTGACGCCGTCGATGAGGAGCTCCGGTGGGTGAGGGAGAGCGGGGACCGGTTGCGAAG CGAAGCAATGAAGGTTCTGGAGAGGGGAATGGAAGGGTTGAACCAGGCAGAGGTTGGTACTGGGTTGCAGGTTTTCTACA ATTTGGGTGAGTTGAAGGGTACGGTGGAGCAGGTGGTGAACAAGTACAAGGGCATGGGCGCGAAGAGCGTGAGTGTGGCG TTGGATATGAAGGCGATTACGGGTTCCGGTGGAAGTGGGTATGGTCCCGGTGGAATCAGGGGTACTGGAACGCCTCAGAT TGGAGGAGGGGTTAAGGCTAGAGAGGCTTTGTGGCAGAGGTTGGGGACTTGCATGGATCAGTTGCATTCCATTGCTGTTG CTGTGTGGCATTTGCAGAGGGTGCTCTCAAAGAAGCGTGATCCCTTTACCCATGTTTTGTTGCTTGATGAGGTTATTCAG GTGAGGCTCATCAGAGTTTTGTGATCATGTTTCATTTTACCTGAAACATAAATTTTTCTTGCTTGAATTGAATGGATATA TGCCTTTAATATAATGCTCTAGTGCATCATACAATGGAACAATGTGTTTGTCCTATGAATGATTGATGGACTTACCAATG TAATTATGCAAGAAAATTCCATGTGGTTTACATAAATTTGGAACTTGTAGAAGTTGTTACTTGTTAGTGCAACAAAGTTA CTTTGTTTGCAGTTATCGCACCTGGTTCGGTGTGAAGTTTAGTGTATGGGAACTGTTCTGTGGTGTGGTGTGTTTCTCTT ACTGAATAGGAAAAGTGGAGGGTTATATACAAATTAAATTGAATCAATAATTATTATTTTCAGTACATATAGGTTCATTC TGATTTGAACAAACTGAATGATAAGATCTATAAATCTATTGGAAGGGTGTAATTGATCTACAAATGTTAGAGATCCCAAA AGTTTAATATCTTTTTTTATTCCTTTTCAAAATGAGGATTCATTGTGAAATACAAATCATTTTCCACCCTTCAAACTATT TCTCCTTTGTGGTCTTCTTTTCTCCTGGTGACCTGGTATGCTGTAAAGTCGTGGCTAATGGACGGGGTGGGGTGACCTGT GACATTACTGTGCTACCTGTAAGTGAAGAGAGAGAAAGGAAATCAAATTCAATTGTTGGTTGTTCCTCTTTGTGCATAAT TATTCAAATAGGCTCCCAGCTTTATGCTATATTTTAAAGTTGCAGTAGACCTTTCTCTCTTAATTAGAAATTTAGAATAT GTTGCATGTAGGATGCAGGGTGTAGTAAAACCCCATGTGTACTTATTTGCTTTTCATCAAACCTCACTAGTTGGATCATG GATAGCATTGAATTGGATGGAATCAATATGCAATCTTTTAAAACTCTACTATTTTGTATATATTCAAATTTCTAAGTGGA ACAAAGTGATCAATATGTAAGGTTTTTGAAGAAGATGAAATGATATATATATATATATATATATATATATATATATTTTA ATTTCTGTTGTTCCAGGTTTTAAAAAAAAGATCTTATGTCATGTACACAGAAACAGCTTCAATGGACTTGCTAGAGGGTT TGGGGTCTTTAGGATCTATTATGGATAGATAGCATTGAATTCTGAGGAACATTGGTTATACTTATTCTAGCTGAGTACCT ACTTTAGTTCACAAAATATTATTTTGTAACTGTTTAACTGTTCCCCCCCTTATTTTCTAACATTGAATTCTGCTGCGTAG GAAGGTGATCCCATGCTAACAGATCGAGTTTGGGAGGCCATTGCGAAGGCTTTTGCAAGCCAGATGAAGTCTGCTTTCAC TGCATCAAGTTTTGTTAAAGAGATCTTTACTATGGGATATCCAAAGCTTTACTCCATGATAGAGAATCTCCTTGAAAGGA TAACTCGTGATACAGATGTCAAAGGAGTGTTACCAGCTATTAGTTCAGGTGGAAAAGACCAGATGGTTTCAGCTGTCGAA ATATTCCAGTCTGCATTTTTGGGTCATTGCTTGAGTCGCCTTTCAGATCTGGTGAATTCTGTATTTCCAATGTCCAGTCG CGGAAGTGTTCCCTCTAAGGAACAAATATCAAGAATTATATCTCGCATTCAAGAAGAGATAGAAGCTGTTCAGATGGATG CACGCTTAACTCTTCTTGTTTTACGTGAAATTGGCAAGGTTTTACTTCTTCTTGCAGAGCGAACTGAATACCAGGTAAAC AAAAAAGCTATTATTGTATATTTAAGGTGCTATGTATTGTTTGAGGTGTTCTATAAACAATATTCATTAACCAAGGAAAG AATTAAACACTAGCTAGTTCATGGGTTTTCAGGAAGGCAGTCAAGTTAACTATTTCATATTTACATCATTTATTTTTTGG ATAAAAGAATATTTTATTACAAGGTAAAAATAGATATGCAGAAGTAGGATACAGATTTAATCATGACATTATTAACTGCA TGCAGATATCGGTGGTGTTTTCTTTCAGTGAGGAGTTCATGTGTATCTTGTGTTGTTGGCCTTGTGCAGTATCACAATCA CATTGTAGTGATTGCTGACCATTCAATTATTTAGCTTACTCATAGCCATGCTAAATGGTAGAAACTTGAGGAGTATAGTG GTTTTCAACTAGTTCTTTGATGTGATATCTAAACACAGTTCCTTTAGGGTTCTAAATATTAGGGGCCTAGTTTATTTGAT TTAGTTTATCTTTATTTCTTAGTGGTAAAGTTTATCTTTATTTCTTTGTGGTTAAGTCTATCTTTATTTCTTTAGTAGGG TTAGTTTATTGTAAATAGGAGTCTTTCCTAAGGTTAGGGTAGGAATTGAGTAATTGAGTTTGTAAAGGGATTTTCCCTGG GAAGGGTTTCACCCATTTAAAGAAGGTTTTCCTTCTTGGAATCCATTAGGATTGTTTTTGTATCCCTCTATCCCTCTCTC TTCTTGTTTGTTTTTCAGTTTTAAATATACAAAAACACCAAAAATATTCCTATTTCCCTTTCCTTTATCTTGTTGATGGC TGTAAGGATCAAACGTTCCTAACAGTTCCTCAGGTGGTTGAGTGAGTAAGCTGGGCCTATATTGTCTGTAGTCTTGTGAT TAAATTTTCTATCCCATAGTGTATCAAGTTTCAACTCAAGGTAGTGGGTAACCCAGTGCTTTGTTCACATTTAGCATTTT GAGGGATTGATTTTAAGAGATGCACACTTCATGTTGATACAACTGGCTCAAAAAATGGGAGAAAGATAGTATTTTATTAC TGAATGAGAGGAATCTTCTAAGCTGACCCAGTGTAGGTGCAGACTGATAAGGATACAGAGCCCCCATAGTCCATAATATT AGAAAGCTTCTGGAACTCCAACAATTATCAGACAACAGCCTCTACACTAAGCCAGCTCTACTTCATTGTTAAGATGAAAA AGGAAGAGAGATAAGAGAGAATGATTAGGGGAAACTGTAATGGAATGATTTGCTATGTGCAGTCTCCCATATGCTTTCAA TAATCTGATTCATAACCTTATTACCTCTTAACGCTCATATAGCTGCAGCTCTCAAACAACCTTCTAATAACCTGTAACAA CTTTCTAACTAACAGTTACTAGCTGCCCACTTTATCAACTTGGGCCTCAGCATTACCTGGCCCTTTTCCCCCTTCTCCTA ACTTGTACTCTTTTTACTATGGGTCTACTATATTCTTGAGGGGAAGAGTCCTGTTCTTTTTTATTTTTTTATTTCTCTTT CTGGGTTTTGTAATATATTTTATATGGTCCCTAAATTTGTTTTTTTTTGTCCATGAGTTTTGAAATCTTTAGGAACCCAA AGTCTATTTTATTCATAAGGAGGGAATAGTTTAGAAGCATAGTTACTAATCTTTTACCTTTCCTTTTTCATTGTTATGGC AGATATCCACGGGTCCCGAATCACGTCAAGTAAGTGGTCCTGCAACACCAGCACAGCTCAAGAACTTCACATTGTGTCAG CATCTGCAAGATGTTCATGCACGAATATCAACTATGCTTAAAGGAATGCCTAGCATTGCTGCAGATGTGTTGTCTGCTTC ATTAGGTGCAATATATGGTGTTGCCTGTGACTCAGTCACATCTTTATTCCAGGCAATGCTTGACCGACTTGAGTCTTGCA TATTGCAAATACATGATCACAACTTTGGAGTGCTTGGAATGGATGCTGCTATGGACAACAATGCTTCACCATACATGGAG GAGCTCCAGAAGTGTATTCTTCACTTCCGCAGTGAGTTTCTATCTAAGTTGTTACCTTCCAGAGCTACTACTGCTAAGGG GACTGAGAACATATGCACCAGGCTTGTCCAGAGTATGGCTTCACGTGTTCTAGTATTCTTCATCCGACATGCTTCTCTTG TCAGACCACTTTCAGAATCAGGCAAGTTAAGGATGGCTAGGGATATGGCCGAATTGGAGTTAGCTGTGGGCCAAAATCTG TTCCCTGTTGAGCAACTCGGTGCGCCATATCGAGCACTTAGATCCTTCCGTCCACTTATTTTCTTGGAAACATCCCAGCT CGCATCTTCTCCTCTTCTTCAAGATCTGCCACCAAACGTCATACTTCATCATCTATATACGCGTGGTCCTGAAGATTTGC AGTCACCACTGCAAAGAAACAAACTAACACCATTGCAGTATTCATTGTGGCTAGATTCTCAAGGGGAGGATCAAATCTGG AAGGGCATCAAAGCAACACTTGATGATTATGCTATAAATGTGAGGAGCAGAGGAGATAAGGAGTTTAGCCCTGTTTATCC TCTTATGCTTCAATTGGGTTCAACGTTAACTGAAAAGATTCAAGCTTCCTCAAAGCCTTGATTGATTTTGTAGACTTGTA GTCTAGCAAATTAAAGTGAGTTTCCAGATTGCTTCTTCAAAGTTTTTGAAAAGGGTTTATTAGTGTCGGAAACATGAGGA AGAAGCCTGCTAGTTCTGCTAGCAAGCAGTGAGGTATAAAAATTCATATGATTTAATAGGTTTATTTTCTTAATTTTTAT TTCCTTTTCTTTTCAATGGAATTGCTATTGTTGGTTAATCTTGAGTTTTCTGGTTGATTGCTGTTATATTCAGTGTAGAG AAATATAGTTTTTTGATGGAAGATAGAAACAAGTCATGTTGTATACTCCCCAAGAATAATGGGCATCTATTCGATTATTT CATTGTATTGTTTGTAGGTTCGCGAGTATCTTTGATTTATGGTACAAACTATAAACTATATCTAATTCTTCATCAATTTA ATTTTCTCGAGGCAGCTTCTTGCAGCCAAATATAAGTGCCATGTTCTGTACTAATGGAGGCAAAATGAAATGCTTCTAAG GTCATTTATTGCTAAAATTACCAATTATGTGGTACATGAAAAAAGGATTCAAGAGGAATCTCTGAATGGACCTC
CDS sequence (LotjaGi1g1v0043000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCACCAGCGGCGGCGAGGTCGCCGGCGTCCACCGTCGCTTCTCCGATCCAACGCCTCTCCACTTTCAAAAACCC CTCCACCGCCACCCCATTCGCCGCCACCGCATCCTCCGCACTCGATTCCCTAGCCTCCGATCCCATCTTCTCCGCATTCC TCTCACCCTCCTTCTCCTCCACCTCATTCTCCGCCGCCGCTCTCTCCTCCGGCTCCCCTGCCTCCACCGCCGAGAAGCTC CACAACGCGATCCGCCTCCTCGAGAATCAGCTCCGCTCCGAGGTGCTTTCCCGCCACGACGACCTCCTCTCCCAGCTCTC CTCCCTCCACCACGCCGACCACGCCCTCTCCACCCTCCGATCCTCACTCTCCTCCCTCCAATCCTCCCTCCGCCGCCTCC GATCCGAACTCTCCGAGCCTCACCGCTCCATCGCTACAAAAACCTCCCAGCTCTCCAACCTCCACCGAACCACCGAGCTC CTCCAGCACTCCGTCCGCGCCCTCCGCCTCTCCAAGAAGCTCCGCGACCTCATGGCAGCCGCAGATCCGGAAAAGCTCGA CCTCGCCAAGGCCGCGCAGTTCCACTCCGAGATCCTGAGCCTCTGCGACGAGTACGACCTCGCCGGCATTGACGCCGTCG ATGAGGAGCTCCGGTGGGTGAGGGAGAGCGGGGACCGGTTGCGAAGCGAAGCAATGAAGGTTCTGGAGAGGGGAATGGAA GGGTTGAACCAGGCAGAGGTTGGTACTGGGTTGCAGGTTTTCTACAATTTGGGTGAGTTGAAGGGTACGGTGGAGCAGGT GGTGAACAAGTACAAGGGCATGGGCGCGAAGAGCGTGAGTGTGGCGTTGGATATGAAGGCGATTACGGGTTCCGGTGGAA GTGGGTATGGTCCCGGTGGAATCAGGGGTACTGGAACGCCTCAGATTGGAGGAGGGGTTAAGGCTAGAGAGGCTTTGTGG CAGAGGTTGGGGACTTGCATGGATCAGTTGCATTCCATTGCTGTTGCTGTGTGGCATTTGCAGAGGGTGCTCTCAAAGAA GCGTGATCCCTTTACCCATGTTTTGTTGCTTGATGAGGTTATTCAGGAAGGTGATCCCATGCTAACAGATCGAGTTTGGG AGGCCATTGCGAAGGCTTTTGCAAGCCAGATGAAGTCTGCTTTCACTGCATCAAGTTTTGTTAAAGAGATCTTTACTATG GGATATCCAAAGCTTTACTCCATGATAGAGAATCTCCTTGAAAGGATAACTCGTGATACAGATGTCAAAGGAGTGTTACC AGCTATTAGTTCAGGTGGAAAAGACCAGATGGTTTCAGCTGTCGAAATATTCCAGTCTGCATTTTTGGGTCATTGCTTGA GTCGCCTTTCAGATCTGGTGAATTCTGTATTTCCAATGTCCAGTCGCGGAAGTGTTCCCTCTAAGGAACAAATATCAAGA ATTATATCTCGCATTCAAGAAGAGATAGAAGCTGTTCAGATGGATGCACGCTTAACTCTTCTTGTTTTACGTGAAATTGG CAAGGTTTTACTTCTTCTTGCAGAGCGAACTGAATACCAGATATCCACGGGTCCCGAATCACGTCAAGTAAGTGGTCCTG CAACACCAGCACAGCTCAAGAACTTCACATTGTGTCAGCATCTGCAAGATGTTCATGCACGAATATCAACTATGCTTAAA GGAATGCCTAGCATTGCTGCAGATGTGTTGTCTGCTTCATTAGGTGCAATATATGGTGTTGCCTGTGACTCAGTCACATC TTTATTCCAGGCAATGCTTGACCGACTTGAGTCTTGCATATTGCAAATACATGATCACAACTTTGGAGTGCTTGGAATGG ATGCTGCTATGGACAACAATGCTTCACCATACATGGAGGAGCTCCAGAAGTGTATTCTTCACTTCCGCAGTGAGTTTCTA TCTAAGTTGTTACCTTCCAGAGCTACTACTGCTAAGGGGACTGAGAACATATGCACCAGGCTTGTCCAGAGTATGGCTTC ACGTGTTCTAGTATTCTTCATCCGACATGCTTCTCTTGTCAGACCACTTTCAGAATCAGGCAAGTTAAGGATGGCTAGGG ATATGGCCGAATTGGAGTTAGCTGTGGGCCAAAATCTGTTCCCTGTTGAGCAACTCGGTGCGCCATATCGAGCACTTAGA TCCTTCCGTCCACTTATTTTCTTGGAAACATCCCAGCTCGCATCTTCTCCTCTTCTTCAAGATCTGCCACCAAACGTCAT ACTTCATCATCTATATACGCGTGGTCCTGAAGATTTGCAGTCACCACTGCAAAGAAACAAACTAACACCATTGCAGTATT CATTGTGGCTAGATTCTCAAGGGGAGGATCAAATCTGGAAGGGCATCAAAGCAACACTTGATGATTATGCTATAAATGTG AGGAGCAGAGGAGATAAGGAGTTTAGCCCTGTTTATCCTCTTATGCTTCAATTGGGTTCAACGTTAACTGAAAAGATTCA AGCTTCCTCAAAGCCTTGA
Protein sequence (LotjaGi1g1v0043000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPAAARSPASTVASPIQRLSTFKNPSTATPFAATASSALDSLASDPIFSAFLSPSFSSTSFSAAALSSGSPASTAEKL HNAIRLLENQLRSEVLSRHDDLLSQLSSLHHADHALSTLRSSLSSLQSSLRRLRSELSEPHRSIATKTSQLSNLHRTTEL LQHSVRALRLSKKLRDLMAAADPEKLDLAKAAQFHSEILSLCDEYDLAGIDAVDEELRWVRESGDRLRSEAMKVLERGME GLNQAEVGTGLQVFYNLGELKGTVEQVVNKYKGMGAKSVSVALDMKAITGSGGSGYGPGGIRGTGTPQIGGGVKAREALW QRLGTCMDQLHSIAVAVWHLQRVLSKKRDPFTHVLLLDEVIQEGDPMLTDRVWEAIAKAFASQMKSAFTASSFVKEIFTM GYPKLYSMIENLLERITRDTDVKGVLPAISSGGKDQMVSAVEIFQSAFLGHCLSRLSDLVNSVFPMSSRGSVPSKEQISR IISRIQEEIEAVQMDARLTLLVLREIGKVLLLLAERTEYQISTGPESRQVSGPATPAQLKNFTLCQHLQDVHARISTMLK GMPSIAADVLSASLGAIYGVACDSVTSLFQAMLDRLESCILQIHDHNFGVLGMDAAMDNNASPYMEELQKCILHFRSEFL SKLLPSRATTAKGTENICTRLVQSMASRVLVFFIRHASLVRPLSESGKLRMARDMAELELAVGQNLFPVEQLGAPYRALR SFRPLIFLETSQLASSPLLQDLPPNVILHHLYTRGPEDLQSPLQRNKLTPLQYSLWLDSQGEDQIWKGIKATLDDYAINV RSRGDKEFSPVYPLMLQLGSTLTEKIQASSKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| PANTHER | 36 | 823 | 788 | 0.0 | ||
| Pfam | 51 | 174 | 124 | 7.6E-28 | ||
| Coils | 116 | 136 | 21 | - | – | |
| Coils | 475 | 495 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intra-Golgi vesicle-mediated transport | The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). | ||
| Cellular component | Golgi transport complex | A multisubunit tethering complex of the CATCHR family (complexes associated with tethering containing helical rods) that has a role in tethering vesicles to the Golgi prior to fusion. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p). In mammals the subunits are named COG1-8. |
Expression pattern of LotjaGi1g1v0043000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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