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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0045900 |
| Transcript ID | LotjaGi1g1v0045900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytidylate kinase; TAIR: AT1G13870.1 KTI12-like, chromatin associated protein; Swiss-Prot: sp|P9WLN2|Y2004_MYCTO Uncharacterized protein MT2060; TrEMBL-Plants: tr|A0A0L9UV13|A0A0L9UV13_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0045900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6280829..6282016) extracted from Lotus japonicus Gifu genome v1.2.
TGCAACCATGCGGGAAGAAAAACAATATAGGAGTGATGATTCATAGACCTCTACATAGTGCTTACACCCCAAGACACCAC TTTTTCTCTATATATCTCGGTCATATCACATCATATATCATATGTGTCACTTATCTCTTATCCTTAGTGGTGCTCTACAT GCACATCAATCTTTATCCTTTATCCATACTAACCCCTTCCGAATTCAAGTGGCTGTTATTAAAATATTACTAAATGATAT TAAACCAAAATAAAATATTACCCCAAAAATTGAAAAAATTAAAGAAAATAGCCATGGTTGCTTGTGGTTGAATTTGAAGA AAGCACCAGAAGCAAGCAAAGCACAGAAAAATGGAGAAACTAGAGGTACCAGTGATAATAGCAATGAAAGGTCACCCAGG TAGTGGCAAGAGCACGTTAGCAAAATCCATAGCCACCACCCTCAGAATCCCTCTGATCGACAAAGACGACGTCAAAGACT GCACCCTCCCGTTACAGCCAACCTCGCCGCCGTCCCTCCTCAACAACCTCTCATACGACGCCATCTGGCAGATCGCCGCC ACGCAGCTCCGCCTCGGCCTCAGCGTAATCCTCGACTCCCCGCTCTCCCGTCCCGCCCACCTCCACCGCCTCCGCCACCT CGCCGCCGATACCGGCGCCCGAATCATAATCATCGAGTGCAGGCCTGGAGACCACGCCGAGTGGCGTCGGAGGCTGGAGG AGCGCGGCGGAGAAGGAGGAGGAGGACATAAGCCTGCTACGTGGGAGGATCTTCAGAAGCTTCTGGAAGGGTACGGTGGT TGCACGGAGTACGACGTGGGTGATGTGCCGAGGATGGTGGTGGATACGACCGTGCCGGTGCCGGTGCCGGTGGAAGAGCT CTGTTCCGCTGCTCTCGAGTTCATCTTCTCTTGCGCTGCTAAGCCTCCCACGATTTAGCCACGTGTTTTCTTTCATCATC GTTGGATGAAACAAAAAATAAAGTTAAAAGGTGTATGTATAAAAAAAGGAAAAAAATATGTACATGGTATTTGTTTATAT TGGAAATTACATGATATAGATGAATGTGTTATGGCCCGTTTAGTATCTTATATAGTATAAGATTTGATTGTATTCGGCCT GATAAAAAACTCAATATTATAAGGTGTTTGGTTATATACTATATAATTTTATAACTCATCATTTCATT
CDS sequence (LotjaGi1g1v0045900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAACTAGAGGTACCAGTGATAATAGCAATGAAAGGTCACCCAGGTAGTGGCAAGAGCACGTTAGCAAAATCCAT AGCCACCACCCTCAGAATCCCTCTGATCGACAAAGACGACGTCAAAGACTGCACCCTCCCGTTACAGCCAACCTCGCCGC CGTCCCTCCTCAACAACCTCTCATACGACGCCATCTGGCAGATCGCCGCCACGCAGCTCCGCCTCGGCCTCAGCGTAATC CTCGACTCCCCGCTCTCCCGTCCCGCCCACCTCCACCGCCTCCGCCACCTCGCCGCCGATACCGGCGCCCGAATCATAAT CATCGAGTGCAGGCCTGGAGACCACGCCGAGTGGCGTCGGAGGCTGGAGGAGCGCGGCGGAGAAGGAGGAGGAGGACATA AGCCTGCTACGTGGGAGGATCTTCAGAAGCTTCTGGAAGGGTACGGTGGTTGCACGGAGTACGACGTGGGTGATGTGCCG AGGATGGTGGTGGATACGACCGTGCCGGTGCCGGTGCCGGTGGAAGAGCTCTGTTCCGCTGCTCTCGAGTTCATCTTCTC TTGCGCTGCTAAGCCTCCCACGATTTAG
Protein sequence (LotjaGi1g1v0045900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKLEVPVIIAMKGHPGSGKSTLAKSIATTLRIPLIDKDDVKDCTLPLQPTSPPSLLNNLSYDAIWQIAATQLRLGLSVI LDSPLSRPAHLHRLRHLAADTGARIIIIECRPGDHAEWRRRLEERGGEGGGGHKPATWEDLQKLLEGYGGCTEYDVGDVP RMVVDTTVPVPVPVEELCSAALEFIFSCAAKPPTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 191 | 190 | 4.5E-82 | – | |
| Gene3D | 5 | 184 | 180 | 2.4E-38 | – | |
| SUPERFAMILY | 7 | 170 | 164 | 1.01E-20 | ||
| CDD | 9 | 109 | 101 | 0.00905974 | – | |
| Pfam | 10 | 131 | 122 | 3.5E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0045900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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