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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0049300 |
| Transcript ID | LotjaGi1g1v0049300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein, putative; TAIR: AT4G03250.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|F4HY56|RLT1_ARATH Homeobox-DDT domain protein RLT1; TrEMBL-Plants: tr|A0A151U240|A0A151U240_CAJCA Homeobox protein NANOG; Found in the gene: LotjaGi1g1v0049300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6842302..6850339) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATTTGGTTTTTGTTTTGACAAACGTAAGGGTTGATTGTGAAGCAAAATAAAACATAAGAAACACGAGACCCAGTT GTTTGTTTTCTTCTGCGTTTGTCTCTCCACCTTCACCAGAAGCTCCTTCCTCTATTCCTAAGCGGAATTCAGGGGTCAAA TTACACAGCTTCACGATTCTAACGTCAATGTTGCATTCTCTTTCAGTTTTCGTGTAAAGGGGTTTCGATTTTCATTGAAT CCACTGAAAAATTTGACCCCAACAGAGAAGCGGTGTTCATTGGAATTCATCTTACCCATGGAAGGTATTGTGTTGTTCTC GCTAAATTTAGTATATTTTTTTATTTGGGTATTCGATTTGGTGCTTGATTTTTCTCAGATTTGTTTAATTTTTGTGTGTG TTGAGATTGAATGAATGACTTTGTTGGAACCTGAAAGATGGATTCTTGCATTGATGGGGTGGTTTTTTTGATGATGGGTG TGGTTCCAAGGGCTTCAATTTGGGGTTTTTGGGTTGTGGAAAAGTGAGTCAAACTGGAGGGTGTAAAAGGGGTTTGATCA AATCTGATCATGAGTGAAATTGGTGTTTGAATTTTGATTTCTTCATACATTTTTCTTTCCATCATTTTTCTCTTGAACAG TTTTTGTGTGCTTTGTTGATTACCATGAACCGATTTCGACTTAGATCTACTTTCTGTCTGGGATAAGGCTTGGTTCTGAG AGATCTATGTTATTGAGACTGCTTCCTATAAAAAAGTAGCTTTATGATTCAATATATTTGAAGTAAGAAACTTTCTGGTT CTTATGAGCATTTGCTAAGAGTAACTTGACTTCTATATCTCATGCATTCATCCTTTTGTATTGTCATCTGTATTCAGCAT CTACTCATGTAGTCATATGTTTGATTTCATAACATTTGTTAATTGATTTGAGTAGTTCAGGCGACATAAGATGTTTCTTA ATTGTTGGATCTTCTTGTATATTGTAATTATTATTTCCATTCTGAACTTCTTCTTTTGGGTTGGTGTTTAGAATCAAGTG AAGTGAAATCGGAAGAAAACAAAGTCTCTATGGAGAAAAATAAGAAAAGGAAGCTCAAAACACCGGCCCAGCTTATGGCC TTGGAGAAATTTTATGATGGTAGGTCTATCTTTTTTTTTTTTTCTTATTGGTGTTAATGCATCTTTCGAAGTGATAATTT TTTAAGGATTTTTTTTTTCGACCTTTGTTTCCAGCGCACAAATATCCATCAGAGGAGAAGAAATTAAAACTTGCTGAGGA GATAGGGTTGACGGAGAAGCAAGTATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAAG CAGTTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGTAGTGGACTTGGGCAAGATTCATGTGGA AGCAGTAAACATGGTGATAATAAGCATCTGGATCCTAAAGAGGCTGAGAGCCATGGCATCTACAATCAAGATATTTCAGT TGCAGATATGACCTATGGACGTAGGGATTATTATCCAGAAAATGGTAGAGGAATGGATGACACATCATCTGAGAGCAGCT CATTTCTGCAAGAACGTTTGTATTCCCAGGGCCAGGATCCCTATGATATGGAGCCTTCTAGACATCGAACACCTAGCGGA TCTCTTCCACCCCTAAATCCCAAGAGTGCAACTAAAATGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGCGAGAT AGAACATGCTGCTATAACTGCTGTTAAGAAGCAACTAGGAAGGCATTATCTGGAAGATGGTCCTCTGCTTGGTGTAGAAT TTGATCCACTTCCTCCAGGGGCATTTGAATTCCAAACTGAATATCCAGTTCATGGTAGGCTGCACTACACTCTACTTTCC CATTTTTTCCAAGTCTCATTCATTTAGTTTTGTAAGACTAAAATATTGTTTACTGTTGAAACTTGGAACTGTTCGGTTAC CTTTTTGGGTTAAAGGAATATGTTGTACACGTTAAATTTGTGACAAGGTTGGATTTGGCATTATTTTTCTGTCATAGGCA GTGAATGCTTACAGATAGAATTAGGGATAAGATGTAGGTGAGTTATTTGTAGTTCGCCAAATATATGTTATCCAACCAAC CCACATCATGTTTCTGTGCTACACATTGGGATGATTGAGATGCTTTTAGGAATTTAAACAGATGCCTTCTTAGTATTAGT ACTAAGATGCCTTCTTAATATAGACACAAACAGGGTCATTGAATTTTGAAGTTCATCTGACGAGGATATTTTCTGGTCTC ACAATTATCAAGATTTAAGTAATACTTGTCAGAAGATTGTTGTTTGCATATGGTCTAGTGTGTTAGCCTTATGTTACTAC TTCTAAGTCAGTTTTTTTATGAATTATGATGTTGCATATGAATTTTTAGTGTCATCACCAATGGTGCATTTAGAAGAGCT TATTTGAGCTTATATTATAAGCACTTAAAGAGGTGTTTAGTTAAACTTATGAACGTACCTTATGACCTACCTATAAGCTC TCGTAAGTTTACGATGTTGAAGTTCTTGAATAAACTTTTGAATAAGCTCTTATACGAACCTGTAAATTTTCTTATAGCTT TTTTTCACTGAGCTTTTCAAATAAGCACTTATATGAAGTGCTTATTGACGTAAGCACTTAATTAAACCATTTACCCAAAT GTAACTGAAACCCGAGTTATCTAAAGAAGTTAACTTTACAAACTGTAAGGTTTAGTTCATGTACTCAATTCACCTTTTTT TGGCTGATACAATCATATATCCTTGATTTGCAAATGCCTATATATATATGTGTGTGTGTGTGTGTGTGTTATATAGATGA TAGAAATAGATATAGGGGGTGGTGTATATAGTGAGAAGGGAGAAAACTTAATCTTGACTTTACAATAGGAGTATGCTCTC CCCTATAGCTCTCTATATGTTGACCATGCTATGACATGCAGTGTATCAGATCTAACTCATATTGAAGGAGTTGTGGCTTT AATTATCCTTACATTTGGAGCTTATTCCTGAAGATAGATGCTGTTTTTTTAGGGTTCATATAGCATAGGATCTTTTGGCA TGACAATCTCTGTTTAGTTGTGCCGTTTTACTTGTTTAGGTCAAGGTAGTTTATTTATGTTCCTTGCATTTTTACAATAA CTATTACATCATAGCTAACGTGTGACGGCTAAGTGTTTTTTTTTTCTTTTTCACTTACTCTAGACCTTATTTCTAACTGT ATTGAATAGTTTTAATAGATTGAGATTCTTATCGTTTAATCTATTGAATGCTACAGAAGCATACCATGTTGCAAATCCAG TTCATCTGAATTCTCCAGAAGTTCCCGCTGTAAAAAGGCAACCCAATCTTAGCTCTGTAAGTGGACCTTTTTATTTTTAT TTTCCTTTTTTGTACTTTGATGAGCCTAGTGATTGAACATGGCCTCTTTAAATTACATTTTACATGCTTGAGAGATTGGA TAGCATCCTGATTAATTATGTTAAAAGCTTGTGCAGTCAGGGACAGTTTTGAGTAGAAATAGAGTAGCATTAGTCTATCT AGAAACTTTGCATATGTCCCTCTGGTTGTTAGCCTAACTTTTAGGTTGTTACAACTACTTGTAACAGACTTACATGTTCG GTTCATTCTCGTCTCACCTATATATACAAGTGTTGCAATATCTCATACTCAGAATTATTATCACGGCTTAAATACCCTTA GGTCCCTGAAATTGTAAAGGGAATCAAGTCTGGTCCTTAAAAAACTTTCGCATCAAATTGTGTCCCTAGAATTTGTTTTT TTAATCAAATTGGATCCGAAGTGTGTTTGAGTCTGATGTGTGATATTTTTTGTCCGGTCAGCTTTTCCACATGGCTTTTT TATTTTTCCATGTCATATAATTAATAGATTTTTTTATTTATTCCAACTCATTTCCTAAACCTAATCCTAATCTTTACTTC ACCACCGTTCTGCACGCACCGCTGCCATACTCCCCACCCCACAACGATTCACCACCACCTGCAAGCTGTCGTTTCCTCTC TCGATCCCTAACCGCACCCCCCATACGAGAAAAAGTAACTGTGTTGGTGTTCCAAAATTGGAGGGTTTTCTGGATCTTGA AGGGGAGGAAAAAGAAGAGGTGAGATATGGGTTCAGTGGTTCACCAAGCTTCAAACCAGCCTCCACAACCAACAAATCCC CAAAGCCATGGTCCTCTTCCCTTTTCCCAGAATCTTCTTCTCTCGCTCAATTGCTCTCCTTCTCGCACCCCTGTTTTCTG CTTCTTCATCTTCTCCTTGGCTCTAGATGGGGTTTGTGGGTTTCAGTTTCTGAGCGGGGGTGGGTTTCTGTAGTGGGTTG CGGGTGGGTTCTGGGTAGGGGTGGGTTGCAGGTGAGGGTGGAGATGGGGGTGGACAAAATCTGCTACTGGGTTTACTGTT CTTGGTATCGTGAACAAGTTGTTGACAGTGGTGATTAATTTGGTAATATGGGACAAGCATTCAACATGGGTGGGTACATT GGGGCTTTTGATTTGTATGCTAGGTGGGGATATGTATCATCAATCCACAAGCAAATCAAAAGCTGCAAAACAAGCAAATG CACAAGAAAAAGACGAGGAACAACAGAAGCTGATTGAGATGCAAAATTGGTGGGTTTTATGGGTTCTGGGGTGAAGAAAG GGGATTCTTTTATGAGATTTGGGGGTTTTGGAGAGGAAGGAGTTGTGGAGGGAGGAAGATAGTGATTGAGATTGCAGTTT TTCTAGATTTATGGTGAGTTTGTGATTTGTGAGTTTGAACATAAGATGGTAGAAAATGATTAATTAGGATTATTTAGGGA TTAATTGGGGCTGAGATGATTAATTAGGGTTTAATATTAATGTACAATTAATCATAACAAGTGGCATTACTTAAATTTAC AAAAATATTAAATAAGCCACGTGGAAAAGCTGACCGTGTCAAAATCTTGACACATCACACTCGCACACACTTCAGATCCA ATTTGATTAAAAAAATATTTCTAAGGACCCAATTTGATGCAAAAAAATTTCAGGGATCAGGTTTGATTCCCTTTACAATT TCCGGGACCTTAAGAGTATTTAAGCCTTATTATCACAGATTCATTTCAGGCCCAGACTCTTCCTCTCTCTCAGTTTCACT TTCTCTTACCTCTTAAGTTGATCGCTATTTATAAACATAACTATAGTGATACTGTGATACCAGTATCCCTGCTCCCTCAC TCTCCTTTACTTGTCTATTTGCAGAGACATGATTCCTATTATACTAAATTTAGTTCCCAAGATTCACATATGGAAGGAGT TGACTTTGGCTTCTTGCAAGACTATGATGTCCAGGATACTCAAGATAAGAAAGCCCGCCAGGATATAAATTACAGTCAAA CTTTCTACAATGATGCCAATAATTTCCCTGGAAGAAACTCTTCCCAGGATTTGTATGAAGACTCTACCAGAGAAGTATCT GCTTATAATAGCTCTAAGAATCATAAAATGGGCAAAGGCAATAAGCGTGGTGTTGAGGGGATGAGATCTTATTCTACTTC TAACCATAGAGATCACTATGAAGATGACATTGCAGTTAAGCCGACAGACATTCTGCTTCTTGAGTATGATAATATCGATC CAAAAAATGTGCAAAGGAGTGAGCATGTAAAATCCAAGCCTTCAAATTCAATCCGTAAATCTCGAGTTCCCATGGACCCT GAAGAGAGAGGGCTATCTACTAGGATGGCGAAGGTTCATTAATATATTTGCAGTTTCATCGTTATGTTCTATATGCAATG ATCAATTTATGATGCTTTTGAAGTTCTTATATTTGGTTGCATATGTGCAGGAAGAGGTGTTTAAGGGAGACCGGAAAGCA AAAAAGAAATACCGTAATGCAGATGGAGTAGGGATGCTTTCAAATGAAATTGCGGTATTGGATGTGTAAACTTACCTGTC CCTCTCTAATGTGGTTATTTAGTTTTCTATTGAGCTCACTACTTTTTTTCATGCCTAGTATGTATGATATTTCGCTTTTG ATAAGAACCTTGGGCGAACCACACCACAAAAGCTAGCTGTTGTAGTTGGAGAGCCCAAGGCCTTATAAACTCCACATTAG AATCCCATACTTCCAATGTCGGACTCAAGTCCCATACCTTGCAATCGGGTCCTAACACTTTTCTATGTGCATAGGTTGCA AAACGAGTTAAAGCTGGTACGCCACAAGAATACAATGTGAAACAATCACCTGTTCCTGATATCGAACGAAGGAAAAAGCA GAGGTGGGCATTTTATCTGTCTCCTTTTGTCCTTTCCTGAGAACTTTTTGAGCTCATTTGCATGCCCTTTCTTTCTACGG TGTTAATTTGACCAATAACTTTCCTAATTTTGCATTTTTTTTCCATGATTTAGATTATGTTTTTGGATGCATCATTTCAA TTTTTTCTAACTAATGGTAAAGATTAACCGTATAGTGTTATCTCTAGTAATATTGTGTATGAGTTTAAAAGATAAAAACT ATGGTTTACTGTTTTTCCTGACAAAATTTTCATCTAAGTTGTTATTGGATAGCTCTACTTTCTAACAGCATTATGTATGA TGATGTAGATCTGGTGCTGATATGCCATTGCCGTCTAGCTTTAGCGAGGACGAAACTGCTGAAACCAGTTCCTCACTGGA TTAATAATGTGTTTGTTTAACACTCTCGCCTTGTCTTGTCTATCAAAACTGAAAAGTATCAACTACATTATTTTTACAAA ACTGAATTTTTTTCAGTTTCGGGTGAAGGACAAACAGGCCCTAATTATTGTTGATAGATGGTGAGAAGTGTGGGGTTTCT CTAAGCCATGATGTACAGCTTTAAATTACATCCATGGGAAGAAGCACTGTTTCTAGGAGTAGTCACATGAATTGGTGACT CCATTTGCTGTTTGTTGTGCTCCCCTATTTGCAGTTTGTAAAAATGTTGTTACCCCCCCCCCCCCCCCCGGGATTTATCT TATCTTTTATTCTTCCTTTTTGTTGATGTAAAATTTCATTTCTTCCAGCTGATTGTGGTAGGTGCTTATATAAATGTCAT TTGTTTATTTATGCCATTAGTGCTTTTGGCACCCTAATTTGGTCCAATTTGATCCTTGTTTGGAAGACTTGCTACTTATG CTTTAACAACTAGGAATGATTAGTTTCGTTAGTTATATCTTGATCACCCCCATATTTAAGTATTGAGGACTATATTGACT AGTAAGTGGGATTTTAGTATTGATTAGCTCTATAATTAGGAATTATGATTTAGTGTGTTTGGATACTAGCGGAGTGCAAC TTGAACGATCTTTAATCTCAATCCATGAGAACAGTCCCGTTCACTTTTTACCTCAAAATGTATGCTACTGTTTGCTTTCA CTGGTGCCATCAAATGTCTAAACATAGTTGTAAACTGACCACGCTTTAATGAGTAGGTTGACGGGCAAAATCATTTTCAC TTGACAATGATAGAAATTATGTTACCAAAACACTATATTCCATGGCTGTTTGTTTTAGGGTTTAGGCATGGATATGTCCA CTGGTGTGCACAAGAATGAGATTGTGTAGTGATATGTTTTGTTTGGATAAAAATCTATGGTTGGGTTAAAGTTGATTTGG TGTTAAATATTAACCTTGCTATGTTATATTCCACATTATTCTTTCTTTCTTTGCTCTCTAGTATGGCTTTTTAGTAACTT TATATGAATGTTTACACTTTATTATGTCCAAATAAAGTTAATTCTTTTCAATTTGCATTTGCAATATTTGAATGAACTTG ATCTGCCTTCGGTTCTAAATCTACCCAAGTATCCGATTCGTGGGTGCTACAGATGGAGGAAGTTAGACAAACTGGCCCAC TTTTTATGTTAGTACATTGTATACAAATCTATGAATATTAGAGATGAGCTTTTGGCTAAAATAAAATAAAATTGGATATT TTCAATTCTTTTACTATTTTACACATCTCAATATTTTA
CDS sequence (LotjaGi1g1v0049300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAATCAAGTGAAGTGAAATCGGAAGAAAACAAAGTCTCTATGGAGAAAAATAAGAAAAGGAAGCTCAAAACACC GGCCCAGCTTATGGCCTTGGAGAAATTTTATGATGCGCACAAATATCCATCAGAGGAGAAGAAATTAAAACTTGCTGAGG AGATAGGGTTGACGGAGAAGCAAGTATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAA GCAGTTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGTAGTGGACTTGGGCAAGATTCATGTGG AAGCAGTAAACATGGTGATAATAAGCATCTGGATCCTAAAGAGGCTGAGAGCCATGGCATCTACAATCAAGATATTTCAG TTGCAGATATGACCTATGGACGTAGGGATTATTATCCAGAAAATGGTAGAGGAATGGATGACACATCATCTGAGAGCAGC TCATTTCTGCAAGAACGTTTGTATTCCCAGGGCCAGGATCCCTATGATATGGAGCCTTCTAGACATCGAACACCTAGCGG ATCTCTTCCACCCCTAAATCCCAAGAGTGCAACTAAAATGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGCGAGA TAGAACATGCTGCTATAACTGCTGTTAAGAAGCAACTAGGAAGGCATTATCTGGAAGATGGTCCTCTGCTTGGTGTAGAA TTTGATCCACTTCCTCCAGGGGCATTTGAATTCCAAACTGAATATCCAGTTCATGAAGCATACCATGTTGCAAATCCAGT TCATCTGAATTCTCCAGAAGTTCCCGCTGTAAAAAGGCAACCCAATCTTAGCTCTAGACATGATTCCTATTATACTAAAT TTAGTTCCCAAGATTCACATATGGAAGGAGTTGACTTTGGCTTCTTGCAAGACTATGATGTCCAGGATACTCAAGATAAG AAAGCCCGCCAGGATATAAATTACAGTCAAACTTTCTACAATGATGCCAATAATTTCCCTGGAAGAAACTCTTCCCAGGA TTTGTATGAAGACTCTACCAGAGAAGTATCTGCTTATAATAGCTCTAAGAATCATAAAATGGGCAAAGGCAATAAGCGTG GTGTTGAGGGGATGAGATCTTATTCTACTTCTAACCATAGAGATCACTATGAAGATGACATTGCAGTTAAGCCGACAGAC ATTCTGCTTCTTGAGTATGATAATATCGATCCAAAAAATGTGCAAAGGAGTGAGCATGTAAAATCCAAGCCTTCAAATTC AATCCGTAAATCTCGAGTTCCCATGGACCCTGAAGAGAGAGGGCTATCTACTAGGATGGCGAAGGAAGAGGTGTTTAAGG GAGACCGGAAAGCAAAAAAGAAATACCGTAATGCAGATGGAGTAGGGATGCTTTCAAATGAAATTGCGGTATTGGATGTG TTGCAAAACGAGTTAAAGCTGGTACGCCACAAGAATACAATGTGA
Protein sequence (LotjaGi1g1v0049300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEESSEVKSEENKVSMEKNKKRKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKRLLKDE AVANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDNKHLDPKEAESHGIYNQDISVADMTYGRRDYYPENGRGMDDTSSESS SFLQERLYSQGQDPYDMEPSRHRTPSGSLPPLNPKSATKMGYKPSGYLKVKGEIEHAAITAVKKQLGRHYLEDGPLLGVE FDPLPPGAFEFQTEYPVHEAYHVANPVHLNSPEVPAVKRQPNLSSRHDSYYTKFSSQDSHMEGVDFGFLQDYDVQDTQDK KARQDINYSQTFYNDANNFPGRNSSQDLYEDSTREVSAYNSSKNHKMGKGNKRGVEGMRSYSTSNHRDHYEDDIAVKPTD ILLLEYDNIDPKNVQRSEHVKSKPSNSIRKSRVPMDPEERGLSTRMAKEEVFKGDRKAKKKYRNADGVGMLSNEIAVLDV LQNELKLVRHKNTM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 483 | 483 | 8.1E-204 | – | |
| PANTHER | 1 | 483 | 483 | 8.1E-204 | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| Gene3D | 12 | 83 | 72 | 7.5E-19 | – | |
| SUPERFAMILY | 15 | 80 | 66 | 5.99E-18 | ||
| ProSiteProfiles | 16 | 76 | 61 | 17.281 | ||
| SMART | 18 | 80 | 63 | 4.3E-19 | ||
| Pfam | 20 | 75 | 56 | 6.4E-17 | ||
| CDD | 20 | 75 | 56 | 2.64674E-17 | ||
| MobiDBLite | 82 | 129 | 48 | - | – | |
| MobiDBLite | 88 | 108 | 21 | - | – | |
| MobiDBLite | 109 | 125 | 17 | - | – | |
| MobiDBLite | 144 | 163 | 20 | - | – | |
| MobiDBLite | 172 | 200 | 29 | - | – | |
| MobiDBLite | 415 | 443 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0049300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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