Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0049300 |
Transcript ID | LotjaGi1g1v0049300.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Homeobox protein, putative; TAIR: AT4G03250.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|F4HY56|RLT1_ARATH Homeobox-DDT domain protein RLT1; TrEMBL-Plants: tr|A0A151U240|A0A151U240_CAJCA Homeobox protein NANOG; Found in the gene: LotjaGi1g1v0049300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6843188..6850282) extracted from Lotus japonicus Gifu genome v1.2.
CATAAGAAACACGAGACCCAGTTGTTTGTTTTCTTCTGCGTTTGTCTCTCCACCTTCACCAGAAGCTCCTTCCTCTATTC CTAAGCGGAATTCAGGGGTCAAATTACACAGCTTCACGATTCTAACGTCAATGTTGCATTCTCTTTCAGTTTTCGTGTAA AGGGGTTTCGATTTTCATTGAATCCACTGAAAAATTTGACCCCAACAGAGAAGCGGTGTTCATTGGAATTCATCTTACCC ATGGAAGGTATTGTGTTGTTCTCGCTAAATTTAGTATATTTTTTTATTTGGGTATTCGATTTGGTGCTTGATTTTTCTCA GATTTGTTTAATTTTTGTGTGTGTTGAGATTGAATGAATGACTTTGTTGGAACCTGAAAGATGGATTCTTGCATTGATGG GGTGGTTTTTTTGATGATGGGTGTGGTTCCAAGGGCTTCAATTTGGGGTTTTTGGGTTGTGGAAAAGTGAGTCAAACTGG AGGGTGTAAAAGGGGTTTGATCAAATCTGATCATGAGTGAAATTGGTGTTTGAATTTTGATTTCTTCATACATTTTTCTT TCCATCATTTTTCTCTTGAACAGTTTTTGTGTGCTTTGTTGATTACCATGAACCGATTTCGACTTAGATCTACTTTCTGT CTGGGATAAGGCTTGGTTCTGAGAGATCTATGTTATTGAGACTGCTTCCTATAAAAAAGTAGCTTTATGATTCAATATAT TTGAAGTAAGAAACTTTCTGGTTCTTATGAGCATTTGCTAAGAGTAACTTGACTTCTATATCTCATGCATTCATCCTTTT GTATTGTCATCTGTATTCAGCATCTACTCATGTAGTCATATGTTTGATTTCATAACATTTGTTAATTGATTTGAGTAGTT CAGGCGACATAAGATGTTTCTTAATTGTTGGATCTTCTTGTATATTGTAATTATTATTTCCATTCTGAACTTCTTCTTTT GGGTTGGTGTTTAGAATCAAGTGAAGTGAAATCGGAAGAAAACAAAGTCTCTATGGAGAAAAATAAGAAAAGGAAGCTCA AAACACCGGCCCAGCTTATGGCCTTGGAGAAATTTTATGATGGTAGGTCTATCTTTTTTTTTTTTTCTTATTGGTGTTAA TGCATCTTTCGAAGTGATAATTTTTTAAGGATTTTTTTTTTCGACCTTTGTTTCCAGCGCACAAATATCCATCAGAGGAG AAGAAATTAAAACTTGCTGAGGAGATAGGGTTGACGGAGAAGCAAGTATCTGGATGGTTTTGCCACAGAAGGTTAAAAGA TAAAAGATTGTTGAAAGATGAAGCAGTTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGTAGTG GACTTGGGCAAGATTCATGTGGAAGCAGTAAACATGGTGATAATAAGCATCTGGATCCTAAAGAGGCTGAGAGCCATGGC ATCTACAATCAAGATATTTCAGTTGCAGATATGACCTATGGACGTAGGGATTATTATCCAGAAAATGGTAGAGGAATGGA TGACACATCATCTGAGAGCAGCTCATTTCTGCAAGAACGTTTGTATTCCCAGGGCCAGGATCCCTATGATATGGAGCCTT CTAGACATCGAACACCTAGCGGATCTCTTCCACCCCTAAATCCCAAGAGTGCAACTAAAATGGGATATAAACCATCAGGA TATTTGAAAGTGAAGGGCGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAACTAGGAAGGCATTATCTGGAAGA TGGTCCTCTGCTTGGTGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAATTCCAAACTGAATATCCAGTTCATGGTA GGCTGCACTACACTCTACTTTCCCATTTTTTCCAAGTCTCATTCATTTAGTTTTGTAAGACTAAAATATTGTTTACTGTT GAAACTTGGAACTGTTCGGTTACCTTTTTGGGTTAAAGGAATATGTTGTACACGTTAAATTTGTGACAAGGTTGGATTTG GCATTATTTTTCTGTCATAGGCAGTGAATGCTTACAGATAGAATTAGGGATAAGATGTAGGTGAGTTATTTGTAGTTCGC CAAATATATGTTATCCAACCAACCCACATCATGTTTCTGTGCTACACATTGGGATGATTGAGATGCTTTTAGGAATTTAA ACAGATGCCTTCTTAGTATTAGTACTAAGATGCCTTCTTAATATAGACACAAACAGGGTCATTGAATTTTGAAGTTCATC TGACGAGGATATTTTCTGGTCTCACAATTATCAAGATTTAAGTAATACTTGTCAGAAGATTGTTGTTTGCATATGGTCTA GTGTGTTAGCCTTATGTTACTACTTCTAAGTCAGTTTTTTTATGAATTATGATGTTGCATATGAATTTTTAGTGTCATCA CCAATGGTGCATTTAGAAGAGCTTATTTGAGCTTATATTATAAGCACTTAAAGAGGTGTTTAGTTAAACTTATGAACGTA CCTTATGACCTACCTATAAGCTCTCGTAAGTTTACGATGTTGAAGTTCTTGAATAAACTTTTGAATAAGCTCTTATACGA ACCTGTAAATTTTCTTATAGCTTTTTTTCACTGAGCTTTTCAAATAAGCACTTATATGAAGTGCTTATTGACGTAAGCAC TTAATTAAACCATTTACCCAAATGTAACTGAAACCCGAGTTATCTAAAGAAGTTAACTTTACAAACTGTAAGGTTTAGTT CATGTACTCAATTCACCTTTTTTTGGCTGATACAATCATATATCCTTGATTTGCAAATGCCTATATATATATGTGTGTGT GTGTGTGTGTGTTATATAGATGATAGAAATAGATATAGGGGGTGGTGTATATAGTGAGAAGGGAGAAAACTTAATCTTGA CTTTACAATAGGAGTATGCTCTCCCCTATAGCTCTCTATATGTTGACCATGCTATGACATGCAGTGTATCAGATCTAACT CATATTGAAGGAGTTGTGGCTTTAATTATCCTTACATTTGGAGCTTATTCCTGAAGATAGATGCTGTTTTTTTAGGGTTC ATATAGCATAGGATCTTTTGGCATGACAATCTCTGTTTAGTTGTGCCGTTTTACTTGTTTAGGTCAAGGTAGTTTATTTA TGTTCCTTGCATTTTTACAATAACTATTACATCATAGCTAACGTGTGACGGCTAAGTGTTTTTTTTTTCTTTTTCACTTA CTCTAGACCTTATTTCTAACTGTATTGAATAGTTTTAATAGATTGAGATTCTTATCGTTTAATCTATTGAATGCTACAGA AGCATACCATGTTGCAAATCCAGTTCATCTGAATTCTCCAGAAGTTCCCGCTGTAAAAAGGCAACCCAATCTTAGCTCTG TAAGTGGACCTTTTTATTTTTATTTTCCTTTTTTGTACTTTGATGAGCCTAGTGATTGAACATGGCCTCTTTAAATTACA TTTTACATGCTTGAGAGATTGGATAGCATCCTGATTAATTATGTTAAAAGCTTGTGCAGTCAGGGACAGTTTTGAGTAGA AATAGAGTAGCATTAGTCTATCTAGAAACTTTGCATATGTCCCTCTGGTTGTTAGCCTAACTTTTAGGTTGTTACAACTA CTTGTAACAGACTTACATGTTCGGTTCATTCTCGTCTCACCTATATATACAAGTGTTGCAATATCTCATACTCAGAATTA TTATCACGGCTTAAATACCCTTAGGTCCCTGAAATTGTAAAGGGAATCAAGTCTGGTCCTTAAAAAACTTTCGCATCAAA TTGTGTCCCTAGAATTTGTTTTTTTAATCAAATTGGATCCGAAGTGTGTTTGAGTCTGATGTGTGATATTTTTTGTCCGG TCAGCTTTTCCACATGGCTTTTTTATTTTTCCATGTCATATAATTAATAGATTTTTTTATTTATTCCAACTCATTTCCTA AACCTAATCCTAATCTTTACTTCACCACCGTTCTGCACGCACCGCTGCCATACTCCCCACCCCACAACGATTCACCACCA CCTGCAAGCTGTCGTTTCCTCTCTCGATCCCTAACCGCACCCCCCATACGAGAAAAAGTAACTGTGTTGGTGTTCCAAAA TTGGAGGGTTTTCTGGATCTTGAAGGGGAGGAAAAAGAAGAGGTGAGATATGGGTTCAGTGGTTCACCAAGCTTCAAACC AGCCTCCACAACCAACAAATCCCCAAAGCCATGGTCCTCTTCCCTTTTCCCAGAATCTTCTTCTCTCGCTCAATTGCTCT CCTTCTCGCACCCCTGTTTTCTGCTTCTTCATCTTCTCCTTGGCTCTAGATGGGGTTTGTGGGTTTCAGTTTCTGAGCGG GGGTGGGTTTCTGTAGTGGGTTGCGGGTGGGTTCTGGGTAGGGGTGGGTTGCAGGTGAGGGTGGAGATGGGGGTGGACAA AATCTGCTACTGGGTTTACTGTTCTTGGTATCGTGAACAAGTTGTTGACAGTGGTGATTAATTTGGTAATATGGGACAAG CATTCAACATGGGTGGGTACATTGGGGCTTTTGATTTGTATGCTAGGTGGGGATATGTATCATCAATCCACAAGCAAATC AAAAGCTGCAAAACAAGCAAATGCACAAGAAAAAGACGAGGAACAACAGAAGCTGATTGAGATGCAAAATTGGTGGGTTT TATGGGTTCTGGGGTGAAGAAAGGGGATTCTTTTATGAGATTTGGGGGTTTTGGAGAGGAAGGAGTTGTGGAGGGAGGAA GATAGTGATTGAGATTGCAGTTTTTCTAGATTTATGGTGAGTTTGTGATTTGTGAGTTTGAACATAAGATGGTAGAAAAT GATTAATTAGGATTATTTAGGGATTAATTGGGGCTGAGATGATTAATTAGGGTTTAATATTAATGTACAATTAATCATAA CAAGTGGCATTACTTAAATTTACAAAAATATTAAATAAGCCACGTGGAAAAGCTGACCGTGTCAAAATCTTGACACATCA CACTCGCACACACTTCAGATCCAATTTGATTAAAAAAATATTTCTAAGGACCCAATTTGATGCAAAAAAATTTCAGGGAT CAGGTTTGATTCCCTTTACAATTTCCGGGACCTTAAGAGTATTTAAGCCTTATTATCACAGATTCATTTCAGGCCCAGAC TCTTCCTCTCTCTCAGTTTCACTTTCTCTTACCTCTTAAGTTGATCGCTATTTATAAACATAACTATAGTGATACTGTGA TACCAGTATCCCTGCTCCCTCACTCTCCTTTACTTGTCTATTTGCAGAGACATGATTCCTATTATACTAAATTTAGTTCC CAAGATTCACATATGGAAGGAGTTGACTTTGGCTTCTTGCAAGACTATGATGTCCAGGATACTCAAGATAAGAAAGCCCG CCAGGATATAAATTACAGTCAAACTTTCTACAATGATGCCAATAATTTCCCTGGAAGAAACTCTTCCCAGGATTTGTATG AAGACTCTACCAGAGAAGTATCTGCTTATAATAGCTCTAAGAATCATAAAATGGGCAAAGGCAATAAGCGTGGTGTTGAG GGGATGAGATCTTATTCTACTTCTAACCATAGAGATCACTATGAAGATGACATTGCAGTTAAGCCGACAGACATTCTGCT TCTTGAGTATGATAATATCGATCCAAAAAATGTGCAAAGGAGTGAGCATGTAAAATCCAAGCCTTCAAATTCAATCCGTA AATCTCGAGTTCCCATGGACCCTGAAGAGAGAGGGCTATCTACTAGGATGGCGAAGGTTCATTAATATATTTGCAGTTTC ATCGTTATGTTCTATATGCAATGATCAATTTATGATGCTTTTGAAGTTCTTATATTTGGTTGCATATGTGCAGGAAGAGG TGTTTAAGGGAGACCGGAAAGCAAAAAAGAAATACCGTAATGCAGATGGAGTAGGGATGCTTTCAAATGAAATTGCGGTA TTGGATGTGTAAACTTACCTGTCCCTCTCTAATGTGGTTATTTAGTTTTCTATTGAGCTCACTACTTTTTTTCATGCCTA GTATGTATGATATTTCGCTTTTGATAAGAACCTTGGGCGAACCACACCACAAAAGCTAGCTGTTGTAGTTGGAGAGCCCA AGGCCTTATAAACTCCACATTAGAATCCCATACTTCCAATGTCGGACTCAAGTCCCATACCTTGCAATCGGGTCCTAACA CTTTTCTATGTGCATAGGTTGCAAAACGAGTTAAAGCTGGTACGCCACAAGAATACAATGTGAAACAATCACCTGTTCCT GATATCGAACGAAGGAAAAAGCAGAGGTGGGCATTTTATCTGTCTCCTTTTGTCCTTTCCTGAGAACTTTTTGAGCTCAT TTGCATGCCCTTTCTTTCTACGGTGTTAATTTGACCAATAACTTTCCTAATTTTGCATTTTTTTTCCATGATTTAGATTA TGTTTTTGGATGCATCATTTCAATTTTTTCTAACTAATGGTAAAGATTAACCGTATAGTGTTATCTCTAGTAATATTGTG TATGAGTTTAAAAGATAAAAACTATGGTTTACTGTTTTTCCTGACAAAATTTTCATCTAAGTTGTTATTGGATAGCTCTA CTTTCTAACAGCATTATGTATGATGATGTAGATCTGGTGCTGATATGCCATTGCCGTCTAGCTTTAGCGAGGACGAAACT GCTGAAACCAGTTCCTCACTGGATTAATAATGTGTTTGTTTAACACTCTCGCCTTGTCTTGTCTATCAAAACTGAAAAGT ATCAACTACATTATTTTTACAAAACTGAATTTTTTTCAGTTTCGGGTGAAGGACAAACAGGCCCTAATTATTGTTGATAG ATGGTGAGAAGTGTGGGGTTTCTCTAAGCCATGATGTACAGCTTTAAATTACATCCATGGGAAGAAGCACTGTTTCTAGG AGTAGTCACATGAATTGGTGACTCCATTTGCTGTTTGTTGTGCTCCCCTATTTGCAGTTTGTAAAAATGTTGTTACCCCC CCCCCCCCCCCCGGGATTTATCTTATCTTTTATTCTTCCTTTTTGTTGATGTAAAATTTCATTTCTTCCAGCTGATTGTG GTAGGTGCTTATATAAATGTCATTTGTTTATTTATGCCATTAGTGCTTTTGGCAC
CDS sequence (LotjaGi1g1v0049300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAATCAAGTGAAGTGAAATCGGAAGAAAACAAAGTCTCTATGGAGAAAAATAAGAAAAGGAAGCTCAAAACACC GGCCCAGCTTATGGCCTTGGAGAAATTTTATGATGCGCACAAATATCCATCAGAGGAGAAGAAATTAAAACTTGCTGAGG AGATAGGGTTGACGGAGAAGCAAGTATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAA GCAGTTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGTAGTGGACTTGGGCAAGATTCATGTGG AAGCAGTAAACATGGTGATAATAAGCATCTGGATCCTAAAGAGGCTGAGAGCCATGGCATCTACAATCAAGATATTTCAG TTGCAGATATGACCTATGGACGTAGGGATTATTATCCAGAAAATGGTAGAGGAATGGATGACACATCATCTGAGAGCAGC TCATTTCTGCAAGAACGTTTGTATTCCCAGGGCCAGGATCCCTATGATATGGAGCCTTCTAGACATCGAACACCTAGCGG ATCTCTTCCACCCCTAAATCCCAAGAGTGCAACTAAAATGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGCGAGA TAGAACATGCTGCTATAACTGCTGTTAAGAAGCAACTAGGAAGGCATTATCTGGAAGATGGTCCTCTGCTTGGTGTAGAA TTTGATCCACTTCCTCCAGGGGCATTTGAATTCCAAACTGAATATCCAGTTCATGAAGCATACCATGTTGCAAATCCAGT TCATCTGAATTCTCCAGAAGTTCCCGCTGTAAAAAGGCAACCCAATCTTAGCTCTAGACATGATTCCTATTATACTAAAT TTAGTTCCCAAGATTCACATATGGAAGGAGTTGACTTTGGCTTCTTGCAAGACTATGATGTCCAGGATACTCAAGATAAG AAAGCCCGCCAGGATATAAATTACAGTCAAACTTTCTACAATGATGCCAATAATTTCCCTGGAAGAAACTCTTCCCAGGA TTTGTATGAAGACTCTACCAGAGAAGTATCTGCTTATAATAGCTCTAAGAATCATAAAATGGGCAAAGGCAATAAGCGTG GTGTTGAGGGGATGAGATCTTATTCTACTTCTAACCATAGAGATCACTATGAAGATGACATTGCAGTTAAGCCGACAGAC ATTCTGCTTCTTGAGTATGATAATATCGATCCAAAAAATGTGCAAAGGAGTGAGCATGTAAAATCCAAGCCTTCAAATTC AATCCGTAAATCTCGAGTTCCCATGGACCCTGAAGAGAGAGGGCTATCTACTAGGATGGCGAAGGAAGAGGTGTTTAAGG GAGACCGGAAAGCAAAAAAGAAATACCGTAATGCAGATGGAGTAGGGATGCTTTCAAATGAAATTGCGGTATTGGATGTG TTGCAAAACGAGTTAAAGCTGGTACGCCACAAGAATACAATGTGA
Protein sequence (LotjaGi1g1v0049300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEESSEVKSEENKVSMEKNKKRKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKRLLKDE AVANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDNKHLDPKEAESHGIYNQDISVADMTYGRRDYYPENGRGMDDTSSESS SFLQERLYSQGQDPYDMEPSRHRTPSGSLPPLNPKSATKMGYKPSGYLKVKGEIEHAAITAVKKQLGRHYLEDGPLLGVE FDPLPPGAFEFQTEYPVHEAYHVANPVHLNSPEVPAVKRQPNLSSRHDSYYTKFSSQDSHMEGVDFGFLQDYDVQDTQDK KARQDINYSQTFYNDANNFPGRNSSQDLYEDSTREVSAYNSSKNHKMGKGNKRGVEGMRSYSTSNHRDHYEDDIAVKPTD ILLLEYDNIDPKNVQRSEHVKSKPSNSIRKSRVPMDPEERGLSTRMAKEEVFKGDRKAKKKYRNADGVGMLSNEIAVLDV LQNELKLVRHKNTM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 483 | 483 | 8.1E-204 | – | |
PANTHER | 1 | 483 | 483 | 8.1E-204 | – | |
MobiDBLite | 1 | 25 | 25 | - | – | |
Gene3D | 12 | 83 | 72 | 7.5E-19 | – | |
SUPERFAMILY | 15 | 80 | 66 | 5.99E-18 | ||
ProSiteProfiles | 16 | 76 | 61 | 17.281 | ||
SMART | 18 | 80 | 63 | 4.3E-19 | ||
Pfam | 20 | 75 | 56 | 6.4E-17 | ||
CDD | 20 | 75 | 56 | 2.64674E-17 | ||
MobiDBLite | 82 | 129 | 48 | - | – | |
MobiDBLite | 88 | 108 | 21 | - | – | |
MobiDBLite | 109 | 125 | 17 | - | – | |
MobiDBLite | 144 | 163 | 20 | - | – | |
MobiDBLite | 172 | 200 | 29 | - | – | |
MobiDBLite | 415 | 443 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0049300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…