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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0055100 |
| Transcript ID | LotjaGi1g1v0055100.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin-related protein; TAIR: AT3G43810.2 calmodulin 7; Swiss-Prot: sp|P17928|CALM_MEDSA Calmodulin; TrEMBL-Plants: tr|K3XLP3|K3XLP3_SETIT Uncharacterized protein; Found in the gene: LotjaGi1g1v0055100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7779850..7781794) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCGATCAGCTCACCGACGAACAGATCTCGGAGTTCAAGGAGGCCTTCAGCCTCTTCGACAAGGATGGCGATGGTCT CATTTCTCAGATCCCTTTTTTTTGTTCTCTCTTTTTTTTTTTTCTTATTAGATCTGGTTTTCATTCAATTTCTCAATTTT CTTCATACCCCACTTCCCCTTTTCAAGAATTTTTGTTAAAAATTGAAACTTTTTTGCGTTTCATTTCTAGGGTTCGTTCT TGTTTGACTTTTCGTTGTTGATTTTTTTAGGGTTGGATTCACATTATGCCTGAAATTTCTTTCCTTTTCACATGTGATCC CTTCACGTGTTGATGTTTTGTGTTCATAGCTTTTGTGTGTTTGTGTGTGTGGATCGTTTGATATGTTTAATTTTTTAGGA ACCCCTTTTTTTATTGTTAGCATTTATGTTTCAATTTTAATTTGAGATTTGATTTTGGTTGTGGATTTATGATTTATTGA TTAGAATTTGCTTATTTGGATATGAAATTTGGTGTTATGTGTTTGGATTTGTGAATAACTCAATATGGATTAGCCTCTTC ACTGTTGTATTGTGCATTTGGGCTGCATTTTGGTCAATTTTCCCATCTGTAAGGATATATCTGGGAATGGAATAGCAATT AGATTTTACCTATTGCTGCTACCTTGTAATGGCACCATGCTTTTATTATTTTGAGTTGTGAATCGCTTGATGTATGACCA GAAATGGGATTCATGATTAACTATTTGTCCCCCTTTTTTATTAGAGAATTGCTTTGTGTATGAGGTTGTAATTTTACATG AAAAAAGAGCATCTACCTAGTATTTGATTTGTGAATCTTATGGAGTCGTCCAAAAAGATAAAATCAACTTCAATTATAAT CAGTGTTATCAAATATCCGCCATGGTGGTTTTTTGGCTTTCCGCCATGGCCGACATCCCTCCATATGGTTGTCATTTCCG CAATTAGTGGTCATATATGGATGGATTTTGGCAGAGTTGTTAATTGCGGATGGCGGGAAGCCAAAATCCCGCCATACATG ACAAATAATGGCAGTCATTTGGTGGGATATCGGCCATGGCGGAAGACCAGTAAACCGCCATGAGAAAGTCATATAATGTT TATCACTTTCTCATGTGTTGATGTGCTTTTGAAACTTTTTCGTGGAGAACATAATTTGAGAAGACAAACAAATTTTAGAT CTAAGTACATGTTTTTTGTTAATGATTCTTGAAGATGACCATGCTATTTCTCATGTGGGGCTGAATCACTTGTTTTGTTG TAACTATTTGTTTAAAATGCTACAGGTTGTATTACCACCAAGGAACTTGGGACTGTGATGCGGTCACTTGGGCAGAACCC AACTGAGGCTGAGCTGCAGGACATGATCAACGAGGTTGATGCTGATGGGAATGGCACCATTGATTTCCCCGAATTCCTCA ACCTGATGGCCCGCAAGATGAAGGACACTGACTCCGAGGAAGAGCTCAAGGAAGCTTTCCGCGTGTTTGACAAGGATCAG AACGGTTTCATCTCTGCAGCTGAGCTCCGCCATGTCATGACCAACCTTGGTGAGAAGCTGACAGACGAAGAAGTTGATGA GATGATCCGCGAGGCTGATGTTGATGGTGACGGGCAGATCAACTACGAGGAGTTTGTCAAAGTCATGATGGCTAAGTGAG GACCAATCCACAACACCAACATTTGAAAAGCACATGAACAGAAAAAGGGACAGGGCAGATAAGTCTTGAAGACAATTCTA TTTTCATTAGGACATCTTCATTTGGGGTCATTAGTTTTTGTTGGAAGTTTGTTTGCTTTATTGGTACTGCTCCTTACTCT TCTGCTTGTTTGCTCTGTCCCTTTGTTTTAGTAGTTTGGATTAGCTGTGTCTCACCATGCATTTGTACTTCACTTTTCAT CTTTATTGGGTTACTATTGCCATGA
CDS sequence (LotjaGi1g1v0055100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGATCAGCTCACCGACGAACAGATCTCGGAGTTCAAGGAGGCCTTCAGCCTCTTCGACAAGGATGGCGATGGTTG TATTACCACCAAGGAACTTGGGACTGTGATGCGGTCACTTGGGCAGAACCCAACTGAGGCTGAGCTGCAGGACATGATCA ACGAGGTTGATGCTGATGGGAATGGCACCATTGATTTCCCCGAATTCCTCAACCTGATGGCCCGCAAGATGAAGGACACT GACTCCGAGGAAGAGCTCAAGGAAGCTTTCCGCGTGTTTGACAAGGATCAGAACGGTTTCATCTCTGCAGCTGAGCTCCG CCATGTCATGACCAACCTTGGTGAGAAGCTGACAGACGAAGAAGTTGATGAGATGATCCGCGAGGCTGATGTTGATGGTG ACGGGCAGATCAACTACGAGGAGTTTGTCAAAGTCATGATGGCTAAGTGA
Protein sequence (LotjaGi1g1v0055100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADQLTDEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 50 | 50 | 7.0E-22 | – | |
| SUPERFAMILY | 2 | 147 | 146 | 3.2E-57 | ||
| PANTHER | 4 | 143 | 140 | 2.5E-108 | ||
| PANTHER | 4 | 143 | 140 | 2.5E-108 | – | |
| ProSiteProfiles | 8 | 43 | 36 | 16.801 | ||
| SMART | 12 | 40 | 29 | 6.9E-8 | ||
| Pfam | 12 | 73 | 62 | 3.5E-15 | ||
| CDD | 12 | 74 | 63 | 5.11952E-21 | ||
| ProSitePatterns | 21 | 33 | 13 | - | ||
| ProSiteProfiles | 44 | 79 | 36 | 14.541 | ||
| SMART | 48 | 76 | 29 | 2.5E-8 | ||
| Gene3D | 51 | 111 | 61 | 7.8E-29 | – | |
| ProSitePatterns | 57 | 69 | 13 | - | ||
| ProSiteProfiles | 81 | 116 | 36 | 17.554 | ||
| Pfam | 83 | 146 | 64 | 1.6E-18 | ||
| CDD | 85 | 147 | 63 | 8.17036E-23 | ||
| SMART | 85 | 113 | 29 | 3.1E-8 | ||
| ProSitePatterns | 94 | 106 | 13 | - | ||
| Gene3D | 112 | 147 | 36 | 1.2E-17 | – | |
| ProSiteProfiles | 117 | 149 | 33 | 15.183 | ||
| SMART | 121 | 149 | 29 | 3.0E-9 | ||
| ProSitePatterns | 130 | 142 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Calcium-mediated signaling | Any intracellular signal transduction in which the signal is passed on within the cell via calcium ions. |
Expression pattern of LotjaGi1g1v0055100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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