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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0055800 |
| Transcript ID | LotjaGi1g1v0055800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | (R)-specific enoyl-CoA hydratase; TAIR: AT5G60335.1 hydroxyacyl-thioester dehydratase type-like protein; Swiss-Prot: sp|O32472|PHAJ_AERCA (R)-specific enoyl-CoA hydratase; TrEMBL-Plants: tr|I3TA16|I3TA16_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0055800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7844518..7846844) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATGAAAGAAAACAACGAATAGAATATATCATTCCAAGTTTGAACAGTGAGAGAAGTGAGAGTGAGAGAGAGGGTC GAAGAGGAACGACCCTTCAGACTTCAGCAAGTTTATTTTTCTAAAAGTAGTTACAAAAGAAAGGACAATAGTGCCATTAT ATATTTATTGCTTCTCCCAAGTCATTTATATTACTCAGAAAAGGCAAGACCCTTAACTCACAGAACACGTAAGACTGTAT CTCCGATCTTTCTGATTGAACTGAACATTCTACGTTATTAGTTCTGATGTTATTCAATCAAATTGGAATGAGGACCATGT ATTTCATTTTCCACTGTTTTTTATTCATTCATTTTTGCATTCATGTGCCTTCACCTATTCACATGCAACTATGCTGTTTG CTAAAATGTCACAAACAATAACCAACAGAATTTCCCTACCACTGCATATTCTTTTTTTTTATAGGCAAATGTTAGTTGTC AGTAATGTTAGTAAATTAGTTTCTCATCAGGGTTCGAACCCTCGGCATTTCACCCTTCATCACCTTGCAACATTAAACGA ATCAAATTGGTTTGCCTTTATTCAAAACTAGTAAATGAGTTTATTTATTTATTTCATCTTCTTACTTTTAACAATTTTAG TTGTTCTTCAATTGTGGGAATATTAAGCTGCAATTTGCTTCATTTTCAGTTAGTGGGGGATAACACTTGGGCTTTGTTCT GTTGGATTGAACACTTGTAAGAATGCTCATCAGGAGTTTAGTCTCTAGCAAACTCCAGTCTCTGAGTCTGAGGTGCTTTT CATCTGCTGCAACTCCGCAAGTACTTAAGCCTGGGGATGTCTTGAGAAAAGCAAGGGCTTTTACTGAGGAAGATGTCCTT CACTACTCCAAGGTGACTCATGATTTGAATCCTTTGCATACTGATTCTGCTGCTGCCCAAAATGTTGGATTTGAGGGTCC CCTCGTACATGGGATGCTCGTTGCTTCTCTCTTTCCACACATCATCTCGTCACATTTTGTAAGTCTCACTCTAACCCTCT CTTTAAATTTTGATATCCCTCCTATGAAGATTAAATAACCAACAAATTAGAGGCTTCTCAAATTAGCTTATGAATAAGCG CTTATGGCCATAGGCACTTAATTAACCTGTTTAGCGCACCCTTTGATTTACATGACCAGGAGGAAACTGAAACAGACTCG TTTCATGGCCTGTTAGGAGATTGAGCTATATGGCATGCTATTGTTGAGCTATATAAAACTGAACCATTTTACAAGTAAAG TAACTAGATTTAGCCAACTTGAACAAAAGACTTAATTTTAAAGTACTTGAATAATAGTGTGAATTGAGGTAATATCATAA GGTCCTCCACTCTTGTTCTTTGATGACAATTGTCCAAAAGTTTCTTCCTTTTCTTCACTGACCCGTTTTAATACTATGGA TAATTGTAGCCTGGAGCTGTGTATGTTTCTCAAAGCTTGAACTTTAAGTTCCCCGTCTATATTGGAGATCAGGTTATTGG TGAAGTACAAGCAACTAATCTGAGAGCAAATAAAAATCGATATCTGTAAGTCAAGTCTTTGGATTACAATCATGCATGTT TTGGAACAGGTAACAATTTTGTTCCTAATTGTTTGTTTGTTTGTTAATATTATTCAGTGTAAAGTTTAAGACAAGGTGCA TCAAGAGCGATGAACTTGTTGCCATTGAAGGTGAGGCTGTGGCTATGTTACCAACCCTGACTGTGGAACAATTGCTGCAT AAGGAGCAGTAGAAGCTATTCACAATTCTAGTCAATAATAAGGTTATTGGATTTGGAGGTTGAACTTGTGATCCCCAACC CCGAACTCAAAAGAATAAATTAAAACAGCATGTGCAAAAAGGTTTTTTCTCTCTTTCTGGTTCTGCTGTAGTTGACGAAG ACTCGTGCTTGATCGTTTCATGTCTGTGACTGTGTTTTGGTAATTTTTTCACAAAAGCTCACTTCTTTGCATAGAGCTCC AAATTTGTACCCTCCAACAGAAATGGTTTTGGTAGTTGCTTGGTATGATGCTCACTATTTAGTATTTACACAAAAGCTAG TGCAAAGTTCTTTGTTGGTAACTTTGTAATTTCACGAGGTACAAAATTGTCGGAATTGACTGGATAAAATTGATTATGTT AAAAGTGAATTGAAATTGAATGATTTATGTTTGAGTATAAATATAAGAAAATTGGCTTATGCAGGTCATAGGAAGGGAAA TTTAGTTGTGAAGTTATAAGAAAAGGTCCAACCACCCTCTCAAATTTGTACCTTTTGTAAATATGCACTCTGAATTTTTA CTTTATC
CDS sequence (LotjaGi1g1v0055800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCATCAGGAGTTTAGTCTCTAGCAAACTCCAGTCTCTGAGTCTGAGGTGCTTTTCATCTGCTGCAACTCCGCAAGT ACTTAAGCCTGGGGATGTCTTGAGAAAAGCAAGGGCTTTTACTGAGGAAGATGTCCTTCACTACTCCAAGGTGACTCATG ATTTGAATCCTTTGCATACTGATTCTGCTGCTGCCCAAAATGTTGGATTTGAGGGTCCCCTCGTACATGGGATGCTCGTT GCTTCTCTCTTTCCACACATCATCTCGTCACATTTTCCTGGAGCTGTGTATGTTTCTCAAAGCTTGAACTTTAAGTTCCC CGTCTATATTGGAGATCAGGTTATTGGTGAAGTACAAGCAACTAATCTGAGAGCAAATAAAAATCGATATCTTGTAAAGT TTAAGACAAGGTGCATCAAGAGCGATGAACTTGTTGCCATTGAAGGTGAGGCTGTGGCTATGTTACCAACCCTGACTGTG GAACAATTGCTGCATAAGGAGCAGTAG
Protein sequence (LotjaGi1g1v0055800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLIRSLVSSKLQSLSLRCFSSAATPQVLKPGDVLRKARAFTEEDVLHYSKVTHDLNPLHTDSAAAQNVGFEGPLVHGMLV ASLFPHIISSHFPGAVYVSQSLNFKFPVYIGDQVIGEVQATNLRANKNRYLVKFKTRCIKSDELVAIEGEAVAMLPTLTV EQLLHKEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| PANTHER | 20 | 160 | 141 | 1.0E-50 | – | |
| PANTHER | 20 | 160 | 141 | 1.0E-50 | – | |
| Gene3D | 25 | 156 | 132 | 4.7E-34 | – | |
| CDD | 28 | 155 | 128 | 1.236E-44 | – | |
| SUPERFAMILY | 28 | 157 | 130 | 1.03E-30 | ||
| Pfam | 35 | 129 | 95 | 7.1E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0055800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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