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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0057800 |
| Transcript ID | LotjaGi1g1v0057800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hyccin protein; TAIR: AT5G21050.1 hyccin; Swiss-Prot: sp|Q6P121|HYCCI_DANRE Hyccin; TrEMBL-Plants: tr|A0A072UY98|A0A072UY98_MEDTR Hyccin protein; Found in the gene: LotjaGi1g1v0057800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8078481..8080210) extracted from Lotus japonicus Gifu genome v1.2.
GTAATCTAGATTAAAATAATCAAGTTTGTTTCCTGGATTAAAGAAAAGGAGGGAGACATGAACATTGTATGTGATTTGGC CACCTTCGAAGAATCAAAGTATAGCATAGGAAAATGCTGATAGTTAAGTGGCAGCAAATTAAAATTATTATAAGATCCTA ATTTTGCTCCATTTGTTTCGCCTCTCTTTGACTTTGATTGATACAACTCTCATCATCTCATACACGTTGCATTTTTTTTA TAAGCCAATAAATCTCATACACATTGCATAACAATATTATTATTCTCTCTAACATAATGACCGATGAAGAAACCACCGCC GCCGCCGCCACCGTCTCCGGCTCACCGGAAAAAATCCAAACAGCCATTCAATCCCTCTTCTCCATTGTCCCATCCCTGAA TCTCTCCACCACCAACCCTCTATCTCTCCTCCACGACCCCAACATCTACACCGAAATCTCCACCCTCCTCCGGGACCCCA ACTCCGGCGCCGGCGACAACAATCTCTGCCGGTGGCTCTACGACACTTTCCAATCCGGTGACCCGGAGCTCCACCTCCTC GTCCTCCGCTTCCTCCCCGTCATCGCCGGCGTCTACCTCTCCCGCGTCGCCGACCGGAAGCCTCAGGCGGGGTTCGAGGC GGTGCTGCTAGCCCTCTACGCCCACGAAACCACCTCACGCGGCGGCGAGCCCGTTACTGTCACAATCCCCGACATGTCAC ACCCCAGTATCTACCACGAATCTAAGGCGCCATCGAAGAACAACGCCACCGAACTCAACGTCGCCGTCGTGTCCCCCGCC TTGGAGCCCCACGGCACCGTCCGATCCACCAGAAGAGCTCGCATTGTCGGCGTCGCATTTGAATTGTTCTACAGCAAGAT TTCGCAGATACCCAGTGCCCCGAAAATCGATTTCTGCGATTTTTGCAAGGTTTGGGCTGGCCAAGATGGAGAAATGTACA AGGATTTTGAAGAGGAATCAGAATCAGAAGATGAGGAGGAAGAAGTAGGAGGTGAGAATTGTGAAGAAGAAGGAAAAGAA GAACATGGGGTTGGTGAAGAGAAACAGAGTAGAAACAGGGGAAAAACAGAGGATCTAAGTGAAGAGAAACAGAGGAGTAA CAGGGGGAAAACAGAGGGGAGGGTTCCTCTGCCTTGGGAGTTGTTGCAACCTGTTATGAGGATTTTGGGTCATTGTTTGT TGGGTCCAAGTAGTAACAAGGATATGGAGTTGTTTGAGGCAGCTAGTGAAGCTTGTAGGAGTTTGTTTGCAAGGGCCATG CATGATGTTAATCCCAATGCTATCTTGCCTATGAGGAGTTTGTTGAGGCTTTCCAAGAGTGTTGTTGGGAATCATGTGGA TGATTTTGATCCCACTGAGTTACCTAAGACTGATGTTATTACTCTTTAGTTTGCATTTATTTTGTATGTTGGGTTGGTGA TTATTTAGATTCCTTAATCTCTTTTTTCATATTGTTGCCTTGTGATTTTGGACTTTGAGGCAGGTTTGAATTCATGTATG TTTCTGAACAAGGAAATTGACTAATTGAAAGTTATTTTTTTTGGGGAATATATGTTGTTCAATATACTTTGTGGTCCCCA AACTTGATTTTGTTCTTTGAAAGTTATACTGTGATTAGATTATTTATGTTTGCATTGCCAAATAACATGAGAGTGTTATC ATGCTTCCATGATTCATGTTACAGTTTCATTGATCTTAGCCTTTGGTTAT
CDS sequence (LotjaGi1g1v0057800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCGATGAAGAAACCACCGCCGCCGCCGCCACCGTCTCCGGCTCACCGGAAAAAATCCAAACAGCCATTCAATCCCT CTTCTCCATTGTCCCATCCCTGAATCTCTCCACCACCAACCCTCTATCTCTCCTCCACGACCCCAACATCTACACCGAAA TCTCCACCCTCCTCCGGGACCCCAACTCCGGCGCCGGCGACAACAATCTCTGCCGGTGGCTCTACGACACTTTCCAATCC GGTGACCCGGAGCTCCACCTCCTCGTCCTCCGCTTCCTCCCCGTCATCGCCGGCGTCTACCTCTCCCGCGTCGCCGACCG GAAGCCTCAGGCGGGGTTCGAGGCGGTGCTGCTAGCCCTCTACGCCCACGAAACCACCTCACGCGGCGGCGAGCCCGTTA CTGTCACAATCCCCGACATGTCACACCCCAGTATCTACCACGAATCTAAGGCGCCATCGAAGAACAACGCCACCGAACTC AACGTCGCCGTCGTGTCCCCCGCCTTGGAGCCCCACGGCACCGTCCGATCCACCAGAAGAGCTCGCATTGTCGGCGTCGC ATTTGAATTGTTCTACAGCAAGATTTCGCAGATACCCAGTGCCCCGAAAATCGATTTCTGCGATTTTTGCAAGGTTTGGG CTGGCCAAGATGGAGAAATGTACAAGGATTTTGAAGAGGAATCAGAATCAGAAGATGAGGAGGAAGAAGTAGGAGGTGAG AATTGTGAAGAAGAAGGAAAAGAAGAACATGGGGTTGGTGAAGAGAAACAGAGTAGAAACAGGGGAAAAACAGAGGATCT AAGTGAAGAGAAACAGAGGAGTAACAGGGGGAAAACAGAGGGGAGGGTTCCTCTGCCTTGGGAGTTGTTGCAACCTGTTA TGAGGATTTTGGGTCATTGTTTGTTGGGTCCAAGTAGTAACAAGGATATGGAGTTGTTTGAGGCAGCTAGTGAAGCTTGT AGGAGTTTGTTTGCAAGGGCCATGCATGATGTTAATCCCAATGCTATCTTGCCTATGAGGAGTTTGTTGAGGCTTTCCAA GAGTGTTGTTGGGAATCATGTGGATGATTTTGATCCCACTGAGTTACCTAAGACTGATGTTATTACTCTTTAG
Protein sequence (LotjaGi1g1v0057800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDEETTAAAATVSGSPEKIQTAIQSLFSIVPSLNLSTTNPLSLLHDPNIYTEISTLLRDPNSGAGDNNLCRWLYDTFQS GDPELHLLVLRFLPVIAGVYLSRVADRKPQAGFEAVLLALYAHETTSRGGEPVTVTIPDMSHPSIYHESKAPSKNNATEL NVAVVSPALEPHGTVRSTRRARIVGVAFELFYSKISQIPSAPKIDFCDFCKVWAGQDGEMYKDFEEESESEDEEEEVGGE NCEEEGKEEHGVGEEKQSRNRGKTEDLSEEKQRSNRGKTEGRVPLPWELLQPVMRILGHCLLGPSSNKDMELFEAASEAC RSLFARAMHDVNPNAILPMRSLLRLSKSVVGNHVDDFDPTELPKTDVITL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 369 | 361 | 3.9E-153 | – | |
| PANTHER | 9 | 369 | 361 | 3.9E-153 | ||
| Pfam | 43 | 342 | 300 | 7.9E-55 | ||
| MobiDBLite | 223 | 280 | 58 | - | – | |
| MobiDBLite | 223 | 242 | 20 | - | – | |
| MobiDBLite | 243 | 278 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0057800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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