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LotjaGi1g1v0058900.1

Overview

Field Value
Gene ID LotjaGi1g1v0058900
Transcript ID LotjaGi1g1v0058900.1
Lotus japonicus genome version Gifu v1.2
Description FBD-associated F-box protein; TAIR: AT3G59210.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q8GW80|FBL65_ARATH F-box/LRR-repeat protein At3g59210; TrEMBL-Plants: tr|G7JDU1|G7JDU1_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0058900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:8263765..8269271) extracted from Lotus japonicus Gifu genome v1.2.

GTTTATACCCACACACACGCTCTTTCAGGTATGAACCCCTTCCCTACTCTCTGATAAAGGTTCGGTAATTTCATCATTTT CTCTTCCTTGTTGAGTGAACTTTGTTTTAGTTGCGTGTTTTTTTTTTGCATCTTCATGCATTCAAACCCTAAACCATAAA ATGTTTAGGGATCTTTCATTTAAACAAAATTTCTGACAAAATGGCTATTGTTGTTGTGTCTACCATACAAATGTGTAGTT AAGATGAATTAATTTCAATTCGAATTAGGGTTTGTTTATAATTCTTGATATGCTTGTTCCTCTCTATTCGCACATTGTTG TGTTGCAGTACAAATGAGTGTGAGAGCGAGTAGTTCTGCAAGCCCTTAAAATATATCACATTTTGTAAAGCATTATTTCA AAATCCATGTTTTCTTTGCGTAACAAAAAGCTATGAACTCGGTTGTTATTTGCATCTATAAACCATCACACTTGGCTGCT TGATAATTATACTTCTTTCCCTTTTTTGGTAGGCACATCAAGGGTTATGGCTGGTTTAAAATCATCACCTGATTCAAATA AGCTCCAAAGACATAATGTGGGTGACATGAAAGATATGATCAGCAACTTGCCCGATAGCATTCTTCATTACATTCTTTCT TTACTCCCTACGAAAGATGCTATACAAACTTCCATTTTGGCGAAAAGGTGGAAGTACTTGTGGACCGGCTTATCTGTCTT TGATTTTAGAAAGTATCTGTCAATCACTTTCATTAACCAAAGACAGAAATCTGTAGATTGCGTTTTTGATCAAGTGGACA GACTAATTTATCATTCTAATTATGTAAGAAGGCTCAGTGTCATGATTGATCCAGTTTGGGCCATGGTTCCTGGATTTTCC ATTGATGCGGATAAAGTTAATTCTCTTATATCTACTGCAATGAAGCACAACATCGAAGAGCTTAAGCTTTTCCTACCTGT GAGGCCTCCATTTAATTTATCTAATTGTTTCTCAGCTTCTAAATCATTGAATAAGCTGGTTTTACATCTGGGTTGTGTTC TAGATGTTTCTAGAGGCATTCATTTTCCTAGCCTAAAGACATTAAAGCTTTCATTTGTTACCTTTGCAAATGAGAAGTCA GCTCAACAACTTTTCTCTGGGTGCCCTGTCCTACAGAAGTTAAGCTTGTGTAATTGTAGTTGGGACAACATTGAGCAGAT CAACATAAAATTTCCCACATTAAAGACATTAACCATCTCTGGCGCCTGTTCTAGTCGAGGTCATTTGCTCAATTCTACAG TCACAATTGATGTTGCGAATCTTTTATATTTCAGTTATAAAAGCCATGTGACCATAGAATTAGTCTTTGTCAACCTGGAC TCCATAGTTGATGCACATATTGATGTTCCTGCTCCTTCAGAAAGTCTAATTAAACTATTGAGTGGACTTGGTAATATCAA ATCTCTTAGACTATCAAATGATATGGTTGAGGTATGTTTAACATCACGCTGATTATCTTCATTTCTTTAACTGTATTACA GCTACTGACAATGCTTGCCTTTAATTGTGTGTTTATTATATTTATTTCATATTCCTCAATAATTTTTTTTTCTTCTACTA GTGTTTTTCCTATGACTTCCATCTCCTTCCAATGTTCAACAATTTGACACATCTTAATGTGGATTTGGGAAATTTTATGT TCACTGAAGAAGCTATAATGGACATTCTCCAAAAGACCCCTAAATTGGAAGTTCTTAATATTCCTATGGTACATCTTTTA TCCTTCTCTAGTTCTTGCATCTGCCATGTTTAAAGGCTAGTAGCACTAACAATAGTATTGTTTCTTTCCATTGACTTGTT TATTGATTCTTATTTTCTTATGTAGGGATTTTACCCAGACATCTGCTTGGATGGTGAAGACTGGATATTGAACTCAGTAC CTTCTTGTTTCAAAAATAGTCTCAAATTATTTTCTATTTCAAATTTTGATGGGGGTGAAGCTGAAATCCAGTTGCTAAAG TTTTTATTAGAAAATGCCACAGTTTTGTCAGAAATCCGGATATTCTGTTCGAAAATATTATCTGCTGATTTGAAGAAGCA GGCTGAGATCAGCAATCAGTTGCAACCTGTAGGCCTGGGAAGTTGTGTCATTAAGTTGTATCAGGAATCAGCAATGGAGA AGATCGTGGGAGATAAACAGATTACTTATACAGAAAAGTATTTGCTTTTGGCAGGCTTGCAGGATTATTAGGCGTCTTTT TAACGCGAGCTAGGAAGGTATGTATCACCCAGTTTTTAATTAAAATAATATTGGTATTTTATTTTAATTAAGATTATATC GTATGGTGGTTTATTAGGCGATATAATAATCCCTTAATGAAATAAAATAATTTATGTGATGTTGGGTGTGTTTTATGAAA TGGAAGAGAGTTAGAGGGTGAAAGTTAGGATTAAAAATAGAGACAAGGACCAGGAGAGATTTTGGGGTTTTTAGTTTAGC CCTTGAGGAATTAGGTTTAGTTGGCTAATTAGGGATGGGGGCAGCAACTGCTGTCACGTAAAAAGAAAAGAAAAAAAAAG AGGAAGCTGCGGTTCGCGTGAAAGAAGAAGAAGAAGAAGGGAGGAGAGTGTAAGATCAAGTTTTGATCGTGTAGTACAAC TCTATGTTTTGATGATTACATGTTAACTATTGTGAATGAACAATTAGGGTACTCTAACGTTGTTTTCTGAGTGTTCAAAT GACAGACTCTGACTCTGGTCTAAATACACATAATTCAGAAGTACTATGCCAAGAGTAAACTCTACATCGTTTTCACAATC TCTATGTTCAATCTGAACAATAGAAAAAGCTTCAGAAGATCTGAAGTTATTTAAGCTCTGATATGGATTCAGATCACTTA AAGCTCTGAAGGCCAGAAGTTCTGAAGGTCCAGACGTTCTGAAGGTCCAGACGCTCTAAAGGTCCAGAAGTTCTGAAGGT GCAGAAGCTGAGAAGTGAAGTCTCTGAAGTCCAAGAAGCAAGCTAGCTCTGAAGACCATGTATCTTACTCTGAGTGCAGA GGCAGAAGTTACAAAGGTCAGAGGATCCATGCTTCCCTCTGACTCTGATCACCAAGCTTCACAAGTTCCAACAAGAAGCG TCGCTCTGATCAGAAGTCATCTAGGTTCAAGGTCATGTCGCTATCTAAAGTACAAAAGGACTTGTACAATTCCTGACGAC CTTACCTACCATGATCAGCCACAGCAGAACCTGGAATTCCCAGATCTGCCCTCCAACGGTAGCATTCCATGCAACTTCCA AACCCTAATCCTTGGAGTATATAAAGAGGTTGAAGATGAAAGATGCCGCCAAGAAACTTTGTTCAAGCGCAAGCAATATT TCAATATTCTCTTAGCAATCTTTCTTCATTGAATTCATTGTGTTTACTACAAGTTTTTCTAGAAGCAATCTCTTTGTAAA CCAAACCTTTTAAACAGTTGTTTAGTTTTCCTTAAGGAGACCAAGGTTGGTTAGATCCTTGAGAAGACTAAGAGAGTGAA TCTTAGTGTGAGCTAAGTCAGTGTATTGTTAGTCACTTGTAGGTTTCAAGTGCAGTTGTAACAAGACTCTGATTAGTGGA TTGCCTTCATTCTAAGAAGGAAGAAATCACCTTCACAGGTGGACTGGATTAGCTTGAGTGATTCATCAAGTGAACCAGGA TAAAATCCTTGTGTTCTTTTCTTATCTCTTATCTTAAGCACTTTACTTTTGTTTCGAGAGATTTGTTAAAATCTCAAGTG GGAAGTTTTATTCTGAAAACGCTATTCAAACCCCTCCTTTCTATCGTTTTTCATACCTTCAGAGAGCCGTTGTCGCGTGG AGGAAATAAGGAGAAGAAGGGGAGAGGCGTGGTGGTGATTGTGGGGAGGGAGAGAAGAGGCCGAGAGTCAATAAGAAAAG GGTCTAGGAGGCTTTGTACCGGTGTCATAGAAGGTAAGGGTCTGAATTTACCTTGTATAATTGTAGCATAACAGAGGTTG AGTTTAACATGAAGAAAACCCCAACTTCTTAGAAAATTCAGAACTGAGATACTGTGTTGAGTGTTAACATGTGGTGAGAA AAATTGATTTTGAGCGAAATTGAAGTTCTAGGTGAAAATTGGGTTCTGTTTCTGCCCGCAGATACCCTAACAGCCTGTGC TGTAGAGAGCATAACTCTCTCTACAAAATTCTAAATTGAGTGAAACCAAATTTGTATGAAAGCTAACTCATAGGTTTATT TTGGGTAATATTTTCATAATTTTTGGATTGTTGGTTCAGTACTAGAATTATCTGCAAGCACTATGTTTCTGCTCGCAGAC ACCCTAACAGCCTATGCTGTAGAGAGCATAAATCTCTCTACAGAATTAAAAATTGAGTGAAACCAATTTTTTATGAAAGC TAACTCATAGGTTTATATTGGGTAATATTTTCATAATTTTTGGGTTGCTGGTTCAATACCAGAATTATCTGCAAGTTAAC TCTGTTTCTACTCGCAGACACCCTAACAGTCTGTGTTGTAGAGAGCATAACTCTCTCTACAGAATTCCAAATTGGGTGAA ACCAATTTTGTATGAAAGCTAACGTATAAGGCTATGTTTGGTAAAATTTTTATAATTTTTGGACTGCTCTTTTAGTACCA GAATTATCTGCAAGTTTACTATGTTTCTGCTTATTTCTAAGAGTGATTCTGGAACTGGTTCTGGTAATTGATGTGATACA TTTGGTGATTTTGTGTTGCTAGTTTGTCGGTGGAATAGTGAACGATTTGATAATTATATTGAAGTGTTATTTTGTGCAAT TTTGGTGTGATTTCCGTTATGGAATTTGGTGAGAAAATATGTTATATATTTGGGGCTGGAGTGGTCTCAAATTGCATGTT TTAATTTATGAGTTTTTGCACGAAATACACTTCATTTAGTCAAGATGCAACATGTCGGTTTTCCTCGGAAAACTAGGGCT TGTCCCAGAACTGGAGTGGTTCTGGAAGTCTGGAGTGGACTTCATTGGTGGTTAGCTGTCTGGAGTGGACGCGGTGATAC CGCTAAGGTTAACAATTGGTACCACATGCATGCGTTGGAGTCTCACACACTAAGTTTCACGTTTCCAGTGGTTTTATGTG TTTGACGAATTGTTGGTGAATTGTTTTGCTGTTGTGGTGAAGTCGTGAAGTTGAATTATTATTTCTTCTTAAAGGCTTAT AATTTTCTGAAACAATAATAAGAATTGAGAAACTGTCTTGAGAGCAAATATTATAACCACTCAGATTTTAAAGAAAAGGT GAAGAGTTTATAAAGCAGAATCTGATTTGTTTACTTGCTCTTTGGTATGCTATATTTTATATAATGTAAGTTCTTAACCT TCTGTTGGAATGATGTTCTATGCGACATCGTACAGGTACTGGAGGTAGAGACGTGGCTCATGAGGAGTAGCTTCGGAGAG TCTTAGTTTATGTTATTATTATTATTATAATAAAATAAACTGTCTTGCTCTGTAATGTAACACCGGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0058900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGGTTTAAAATCATCACCTGATTCAAATAAGCTCCAAAGACATAATGTGGGTGACATGAAAGATATGATCAGCAA CTTGCCCGATAGCATTCTTCATTACATTCTTTCTTTACTCCCTACGAAAGATGCTATACAAACTTCCATTTTGGCGAAAA GGTGGAAGTACTTGTGGACCGGCTTATCTGTCTTTGATTTTAGAAAGTATCTGTCAATCACTTTCATTAACCAAAGACAG AAATCTGTAGATTGCGTTTTTGATCAAGTGGACAGACTAATTTATCATTCTAATTATGTAAGAAGGCTCAGTGTCATGAT TGATCCAGTTTGGGCCATGGTTCCTGGATTTTCCATTGATGCGGATAAAGTTAATTCTCTTATATCTACTGCAATGAAGC ACAACATCGAAGAGCTTAAGCTTTTCCTACCTGTGAGGCCTCCATTTAATTTATCTAATTGTTTCTCAGCTTCTAAATCA TTGAATAAGCTGGTTTTACATCTGGGTTGTGTTCTAGATGTTTCTAGAGGCATTCATTTTCCTAGCCTAAAGACATTAAA GCTTTCATTTGTTACCTTTGCAAATGAGAAGTCAGCTCAACAACTTTTCTCTGGGTGCCCTGTCCTACAGAAGTTAAGCT TGTGTAATTGTAGTTGGGACAACATTGAGCAGATCAACATAAAATTTCCCACATTAAAGACATTAACCATCTCTGGCGCC TGTTCTAGTCGAGGTCATTTGCTCAATTCTACAGTCACAATTGATGTTGCGAATCTTTTATATTTCAGTTATAAAAGCCA TGTGACCATAGAATTAGTCTTTGTCAACCTGGACTCCATAGTTGATGCACATATTGATGTTCCTGCTCCTTCAGAAAGTC TAATTAAACTATTGAGTGGACTTGGTAATATCAAATCTCTTAGACTATCAAATGATATGGTTGAGTGTTTTTCCTATGAC TTCCATCTCCTTCCAATGTTCAACAATTTGACACATCTTAATGTGGATTTGGGAAATTTTATGTTCACTGAAGAAGCTAT AATGGACATTCTCCAAAAGACCCCTAAATTGGAAGTTCTTAATATTCCTATGGGATTTTACCCAGACATCTGCTTGGATG GTGAAGACTGGATATTGAACTCAGTACCTTCTTGTTTCAAAAATAGTCTCAAATTATTTTCTATTTCAAATTTTGATGGG GGTGAAGCTGAAATCCAGTTGCTAAAGTTTTTATTAGAAAATGCCACAGTTTTGTCAGAAATCCGGATATTCTGTTCGAA AATATTATCTGCTGATTTGAAGAAGCAGGCTGAGATCAGCAATCAGTTGCAACCTGTAGGCCTGGGAAGTTGTGTCATTA AGTTGTATCAGGAATCAGCAATGGAGAAGATCGTGGGAGATAAACAGATTACTTATACAGAAAAGTATTTGCTTTTGGCA GGCTTGCAGGATTATTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0058900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGLKSSPDSNKLQRHNVGDMKDMISNLPDSILHYILSLLPTKDAIQTSILAKRWKYLWTGLSVFDFRKYLSITFINQRQ KSVDCVFDQVDRLIYHSNYVRRLSVMIDPVWAMVPGFSIDADKVNSLISTAMKHNIEELKLFLPVRPPFNLSNCFSASKS LNKLVLHLGCVLDVSRGIHFPSLKTLKLSFVTFANEKSAQQLFSGCPVLQKLSLCNCSWDNIEQINIKFPTLKTLTISGA CSSRGHLLNSTVTIDVANLLYFSYKSHVTIELVFVNLDSIVDAHIDVPAPSESLIKLLSGLGNIKSLRLSNDMVECFSYD FHLLPMFNNLTHLNVDLGNFMFTEEAIMDILQKTPKLEVLNIPMGFYPDICLDGEDWILNSVPSCFKNSLKLFSISNFDG GEAEIQLLKFLLENATVLSEIRIFCSKILSADLKKQAEISNQLQPVGLGSCVIKLYQESAMEKIVGDKQITYTEKYLLLA GLQDY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.20.1280.50
13 64 52 2.0E-5 –
PANTHER
PTHR32212
14 449 436 3.9E-63 –
PANTHER
PTHR32212:SF289
14 449 436 3.9E-63 –
ProSiteProfiles
PS50181
22 70 49 10.001
IPR001810
SUPERFAMILY
SSF81383
23 72 50 4.19E-10
IPR036047
Pfam
PF00646
25 63 39 2.9E-5
IPR001810
Gene3D
G3DSA:3.80.10.10
119 470 352 1.1E-18
IPR032675
SUPERFAMILY
SSF52047
180 362 183 3.66E-9 –
Pfam
PF07723
182 207 26 1.0E-5
IPR013101
Pfam
PF08387
381 422 42 1.4E-11
IPR006566

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0058900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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