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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0061500 |
| Transcript ID | LotjaGi1g1v0061500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone DnaJ; TAIR: AT3G44020.1 thylakoid lumenal P17.1 protein; Swiss-Prot: sp|Q2VYT0|DNAJ_MAGSA Chaperone protein DnaJ; TrEMBL-Plants: tr|B0BLA9|B0BLA9_LOTJA CM0545.330.nc protein; Found in the gene: LotjaGi1g1v0061500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8594370..8597246) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAGAAGCAAACTAGAGAGAGAAGATTTAAAAAACTAGAGAGAGAAAGAGAGATGCCTTATTGCTTTTAGCTCCTCC CTCCACAATCCACATACTAATAATAATATTATTTGTATTGTTTTCCTTTAATCAATGGCCACGCTTTCTTACTCCACTCT TCATCCTCTATCTTCTTCTTCTCTCCCTCCTTCTTCTTCATCATCTTCATCTTCTTCAACCTCGCTTCACCTTTCACCAT GTTCATCTCACTCTCTTCCACAACCTTCTCCACCACCTCCATCCAAGTCCCACTTCCCTTCCCTTCCCCGCTTCCCTTCC AAATGCAGACACAAACCACCCAAGCCGCCTAGGCTCTTCATGATCATCGACCCCATTTTGCTGCTCAACGGCTTCGGCGG CGCCGGTTTCTACTTAGACACTCAAACACTTCTCGCCACTGTTAGTGTTTTGGCTGCCATTGCTCTTTCTCTGTTCCTTG GCCTTAAGGTAGTGATTTCTGATTGCCCTCCATTGATTCTGTTAGTTTTCATGAAAATGTATTCTTTTTCACTTTTTGGT TAAATGTAGCATTTACCCATATGAATTTTTGTATTGGTTTGTGTTTGCTTTTAAAAATATATGCATTTTAGTGTTATTGT GTGTCCAAATAGACTAGCTCTTTTTTTTATCAATGGTGTTTTCTTGGTTTTTAGATGGTAGTTTCTGCATATTTTCTGCT GCTTCAGTTGTGGGGTTGTGTTGGTTTTGATTGAAATTGTACTATGGTTTTGGAAAAATAAAGTAATTAAACAATAGTGA TAATATGAGTCCATTTCTTTGCCTGAATCAGAAATGTGCTATGAGATTTTCATCCACATTTGCATTCATTTTTGGTTATG GAAGTAACATTGTGTGTGGTTTTGCAGGGTGATCCGGTGCCTTGTGAGCGTTGTGCTGGCAACGGTTAGTGTTTTTCTGC ATCTGGACTTCTAGATTGATGTGCTTGTTTGTTGAATTTTTATGGAGATTATTGAGGCTTTATAGCAAGAGTATGAGGAA CATTTTAAAATATTAGGAGTAAGGATATGACAAGTTATGTGTTTAGAAAAAACTAATGTGGCTTGGATAAACTATATGCG GAAGTAGAAAGTAGGAACACTGATTGCTTAGTGTGTGTTTGGATACTAGTTGAGTGCAACGTGAATGAACTTTCATCTCA ATCTATAAGAAGGGTTATGTTCACTTTGTCTTGAAGTGTGTGCCAATGATATCCAAACATAGCCCTATTTACTTTCATGG AGTATACTTGGGGTCTTCTTGATTTAGCAAATCATAAGTTTTATGATGGAAAAGAGAGGATGGATTAGAACCCATTTTGA TCCAAAATGATCAGAGCTGAGAATAGATTATTTTCTTTTCCTCATCCTTCTGTCTTTGTCATACTAATACCAATCAAATT CGTATAAACTTTTCAAGTTAAAATCTTCACCTCCCATTTCCCACGGTTCAACCAAGCTGTGACCTTCAGGGAGTTTGGAA CATTGCCAGCATCTATATGTATCAGGGAAGTCAGTACCGAGTGCATTTCAAAATCCAATTTTGATTGTTTGCTAAAAATA TTGAAAGAAGAATACCTTGCTTGATTAGTAGATGATGAATCAGTGTCAATTACTGACCTGTACAAGTTTGTGTGTAACAT ATTATGATTGGATTTTAGCTTGAGGAGTGCATCATTAAATTTCTGACTGATTATTTTTGGATTAAGATGTTGCTTCATAG TATCCCATAGCAATAGGTCATTGAAATGGAGAAAGAAGGTCGAGGTCGCATAATGTTTTAGTGGTAGTTATAGTTATGGA TGAGATTATGAAGTGTTTCTAATGCATTCTACTTTACATATGAAGTAAAGGGCAACTTGTATGAATTATGTTGACAGAAG TTACAATTTTAAATACCATTGTTGACAAGCAGGTGGAATGAAATGTGTTTTCTGCAACGATGGCAAGATGAAGCAAGAGA TGGGGTTGATTGATTGTAAAGTATGCAAGGGTTCAGGTATCTCTTTCTGTTATCATGCATTAAAAAACTAATATGATTGC TTTGGATATCTAAAAATATTGCATGTATTTCACATTTTTTACCAGCAAGATATCATGCCCTCTCCCTGAAAGTAAACATA TCATATGTTTATTTTCCTTTCTAGAATATCATTTCATATTCAAGGCCTTCAAGTTCTCTCTTTATACATATGTTTATAGG ATTGATACTCTGCAAGAAATGTGGAGGTTCTGGCTATTCCCGAAGGCTATGAGCAGATTCACTATTAAATCTAGAAACCA TCTGTTCTGAAATCTGTAAGATCATGTAATGTAACAATTATATTGTTCATAGTCTCTTTTTCTGTGATTCATCTTAATCA CTTTACAGTGCGCTTCTCTTTGATGTCCTTGCTAATTGCTATCACAAAAAAAAAAATGAAAGCATAAAATAAGTCAATAT TCACCCCTAAATCAAAATCATGTTGATCGTGAGTAGTTGTATATCAACCAACCCATGTACTGTAAGCATCCTTGTCAAGA ATACGCCTAAGAAGTCATTAGGATTGGACTAATCAGAAGAGGTTTGGTTTGGATAGTTTGCATTGCATCATGACTAAACT TCATTGTCATCATGACAATGTAAACTTTTAAGTGAAATATTGACTACAAGATTAAGTACCTACAAATGTTTGATTTAACC GAAATTTGGTGTAGATGGTAATATGATATAGTTATTTCTGAAGTAAATGGATCCCCAACCATGTATAACACTAAAAATGG ACCAAAAAAAAAGGCGATACACTTAGGGGGCGTTTGTTACAAGTCATCAAAAATCATTCCTGGGTATGAGCTTTCCC
CDS sequence (LotjaGi1g1v0061500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACGCTTTCTTACTCCACTCTTCATCCTCTATCTTCTTCTTCTCTCCCTCCTTCTTCTTCATCATCTTCATCTTC TTCAACCTCGCTTCACCTTTCACCATGTTCATCTCACTCTCTTCCACAACCTTCTCCACCACCTCCATCCAAGTCCCACT TCCCTTCCCTTCCCCGCTTCCCTTCCAAATGCAGACACAAACCACCCAAGCCGCCTAGGCTCTTCATGATCATCGACCCC ATTTTGCTGCTCAACGGCTTCGGCGGCGCCGGTTTCTACTTAGACACTCAAACACTTCTCGCCACTGTTAGTGTTTTGGC TGCCATTGCTCTTTCTCTGTTCCTTGGCCTTAAGGGTGATCCGGTGCCTTGTGAGCGTTGTGCTGGCAACGGTGGAATGA AATGTGTTTTCTGCAACGATGGCAAGATGAAGCAAGAGATGGGGTTGATTGATTGTAAAGTATGCAAGGGTTCAGGATTG ATACTCTGCAAGAAATGTGGAGGTTCTGGCTATTCCCGAAGGCTATGA
Protein sequence (LotjaGi1g1v0061500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLSYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPPRLFMIIDP ILLLNGFGGAGFYLDTQTLLATVSVLAAIALSLFLGLKGDPVPCERCAGNGGMKCVFCNDGKMKQEMGLIDCKVCKGSGL ILCKKCGGSGYSRRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 66 | 66 | - | – | |
| Phobius | 1 | 73 | 73 | - | – | |
| MobiDBLite | 1 | 39 | 39 | - | – | |
| PANTHER | 20 | 175 | 156 | 4.2E-57 | – | |
| PANTHER | 20 | 175 | 156 | 4.2E-57 | – | |
| MobiDBLite | 40 | 55 | 16 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 74 | 93 | 20 | - | – | |
| Phobius | 94 | 98 | 5 | - | – | |
| TMHMM | 98 | 117 | 20 | - | – | |
| Phobius | 99 | 117 | 19 | - | – | |
| Phobius | 118 | 175 | 58 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0061500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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