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LotjaGi1g1v0061600.2

Overview

Field Value
Gene ID LotjaGi1g1v0061600
Transcript ID LotjaGi1g1v0061600.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description ERD (Early-responsive to dehydration stress) family protein; TAIR: AT4G22120.1 ERD (early-responsive to dehydration stress) family protein; Swiss-Prot: sp|Q5XEZ5|CSC1_ARATH Calcium permeable stress-gated cation channel 1; TrEMBL-Plants: tr|B0BLA8|B0BLA8_LOTJA CM0545.360.nc protein; Found in the gene: LotjaGi1g1v0061600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:8606409..8613688) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTTCGCTTGGTGATATAGGACTTGCAGCGGCGATCAACATCCTTACTGCATTTGCTTTCTTAATAGCATTTGCGGT ACTTCGAATCCAACCCATTAATGATAGGGTGTATTTTCCAAAATGGTATCTGAAGGGTTTAAGGAGCAGTCCGTTGCAAG GAGGGGCGTTTGTGTCCAAGTTTGTCAATTTAGACTTCAGGTCATACATAAGGTTCTTGAATTGGATGCCTGCTGCATTG CAAATGCCGGAACCCGAACTAATTGACCATGCAGGCTTGGACTCTGCAGTATACTTGAGGATCTACTTACTAGGGTATGC TCTAATAGAATTTAGTTTCCCTATAGCAGCGAGTGCGTGTTTGGATAACACTGTAGATTTCATGTTGGAAGGAGATTGAT TCTGGAAGAAGCTACTCCTAGTAGCTTTATGGTAGTAAAATTGATTCAGGGAGATCTGAAGATGAATCCAAAATTGATAT GAACATTGTGAAGAACTTGCTAGTATTCAGACTGATTTATGAGCAGCTTAATGAGTACATACTTTCCCCAAGGATTAAGA TCCTTTGTCCCCATTTGATGTCCCCTATCCTATCCCACCAATTAAATTGTGTCATGTCAATTAAAGAATGCATGTTTATG ACAATTATAAACTTACATAGGTGATTTTTAATTGTCATAACACAATTTTATTGGTGGGACAGAGAAGGGGACACCAAATA GGGACAAAGGATTTCAATCCTTGTCACCAGGGCTTATTTTTATGATAATTCCATAACCGTAATTCCTGATAAAAATATTT ACTGAGTGAATTTTTTCCTACACATTAAATTGTTCCAACAGAAGTTTCTTTTTCAGAATTATCCCTTTCTTCTTGCCCCA CAATTAGTTTTATCATGTCTTTCCCTTTTGACTAACTGCTTTCCCTTATTCAATTCAAGTGCAGGCTGAAAATATTTGTC CCCATTTCACTCCTAGCATTTTCTGTTATGGTTCCCGTCAATTGGACCAACAACACCTTGGAACGTTCCAATGTGGAGTA TAGTAACATAGATAAGCTTTCTATTTCAAATATCCCAACTGGATCAAATAGGTATACAAACTTTTCAGTTGGTTGGACTT TTTCTTATTTTCTACCTGTTTTGGCTGTTTATATAATCTATCATTTAATATGAACTTTATATTAACATTCTATTTATCAA TATATGTGATTCTTCATTTAAAAGAATAATACATATTAGTATGATACTTTCATGTGTATCTTCTTGATCAATTGGTAGAA CTAATTTTCTAATGATGTAATATATGTTTATTCCTATGTTTAAAAGAATAGTACATATTAATATGTTAACTTGCATTATT TTGTCGCTGTTGATATATTAGCATTTATAAACCTCTAAGCAATTTCATGCAAATATTCCTGATGAATTTGAAACAAATCA ATAGCTCTTCTGGTTGTTGGTACTATAAAACCTGTTTTCATTCCTGAAGTAGCTGCCAAGTTTTTCATACAAGCATGTTT ATCTTCCAATAACTCATTACATGTATTGCAGATTTTGGACTCATCTGGCAATGGCTTATCTTTTTACCTTCTGGACATGC TATATCTTGAAAAGGGAGTATCAGATAGTTGCTACAATGAGATTGTCCTTTCTTGCATCTGAACGACGCCGTCCTGACCA ATTTACGGTAAGATCAAGTTTTATCACATTGAAGTACTGAACAAAGATGGTAAGCTGATGATCATAGTAGCATAGCACCA ATTCTATGAAAAGGATTTATATCATAAGATTGGTAAACTCCTCCTAATTCCTGAGCTCTGACATGACATGGAAGGAATGT ATTATGCTGATTTCGAGTAATGATCCAAGTGCACCTTCCTATCTTGCTTGGAAGAAATAGAGGAAGAACTTTATGCAAAT AATTATGTCCTAACTGGCCTGGTTGCTTACCTTTCAGAATTATAAATGTAATTAAGTATAGTACTCTACCCTGTCTTGTC ATAAATATCTTGTTTTATGATTTGGGAAATCAAATATCCATAAAATCAAGGTAAATGTGTTTAAAAGCAGTTTTACACTG ATTACTAAAACATTCATTAATTTTATTTCTAGATTTAAGTTTACAAGCATTAATTATTCGTAATATTTACTCTGTCTGAA TATATAATTATCTGTTATACAAAGTCACAATGCTCTTTAACAGTTTAACTTAGGTTTTTTATCTTGTTCCCCTGTGCTCC TTCTTCAAGAAATTACTGTACATCTGTGCAGGTACTTGTTAGGAATGTACCACCTGATCCTGATGAATCAGTAAGTGAGC TAGTGGAACATTTCTTTTTGGTCAACCATCCAGAGCACTATCTCACGCATCAGGTCTGATCCTTTTTTGCTACAACCTTA CATGCCTAATTTTGTCTTTGTTTTGATATGGTTGTGTAATTTGAACTATTTAGTTATATACCAAAACAGTAAAGCTTACC TGTCATGATTTCATATTCATACACATTTTTACTAGTATTCAAATGGATAGCTTTTACCTTGTATGATGAGTAAATAATAA GATATTTAGGGTTTAGGGTTCAAGTTTTCGTGTGGTTGTGTTGTTTTCCAATATGGTCTGGTAAGTTTCAGTGCAGAACA GTTGCCTAATGTTTGACGACCCTTTCTTTCTTTCTTTCAGTTTTTGTTTCTGTTAATTATATATTGTAGATTGGAAAATA AATTTCAGGCGAAACTTCTTTTGTTGTTTGTAGCATGATCAAGTTTATGGCCTTCTTGAGAAATTTTTGTTCCATACACT GTTGAAATAGATTTTCTCAATGGGATTATCTCTCATTATTAAATAGAATATCACACCAGTTAGCTTTTTAAAAAACGTTC CTGCTTAAGATTTCGTCTAAGGTTAGAATCACCCAAATTATTATGACTAAAAAACCACCTTTTATTATTACCATTTTCTG GGAACATAATGGATAGTTTTACATTAAATTGAAACTTTGATGGAGTTCTCCCTCAATTGGCCATTTTTCATACAATAGCC TTCATTTGATTTTATTGTTATAATGATATTGGACCCTTGGATCACATAACATAATATCAAGCTTAGTTCTTTGTGTTTTA TACTACCAACCATGTTGTTTTGCTGTTTTTCCCTTACTTTTAGAGAAATTTTTGCAGGTTGTTTACGATGCAAAGAAACT TTCTAGTCTAGTTGCTAAGAAGAAGAAAAAGCAGAATTGGCTTGACTACTATGAACTTAAACATTCTAGAAACCAATCCA TAAGGCCAACTAAAAAGGTAGGCCTTATCCAATAAGCCAGTTCATATGAACTCCAAATTATCTTCCATTATTTTTTTCTC TTCAGCATAAGCTCTTGCCGTTTGAAAATTATTTGGTTTCTTTTTTCTTTCCTCTTGCGCCATGTAATTCCCATGATGAA CATTGTCCTTGCAGACTGGTTTTTTAGGTCTTTGCGGTAGTAGCGTGGATGCGATTGATTTTTATACTGCTGAAATTGAG AAACTATCAGAAGAAGTAAGCATTACCTTCTGTGCATATTTGACAATTGCCACCAGAATTTCATGTGCTTCCTTTATAAT TTCATTACATATAAATACTTTGGTAGATATCTTTTTCTCAGGGTTGATACCCCCTAAACCCTAAAATTAAGAATTTGATA TGATTTGATGCTTCTGTTAACTTGCAGATAGAGTTGGAGAGAGATAAGGTGAAGAAAAATCCTAAATCTATTATGCCAGC TGCATTTGTTTCCTTCCGAACTCGCTGGGGTGCAGCTGTTTGTGCACAAACTCAACAAACCAGAAACCCAACTATATGGT TGACTGAGGGGGCTCCAGAACCTCGTGATGTGTATTGGGATAACATGGCAATACCATATGTTTCACTCTCAATAAGGAGG CTTATAATTGGTGTTGCTTTCTTCTTTCTGACGTTCTTTTTCATGATTCCTATTGCATTTGTGCAATCACTAGCTAATAT TGAAGGCATTGAGAAGGCAGCACCTTTCTTGAAGTCCTTTATTGAAATGTAAGCATTATTTTTTCTTCCCATGTCATACT TTTCCTTTTTTTTAATTAATACATATATCTGTTGGCTGCTTGACATTGTAAACAAAATATATTGAATGGTGTTGAAACAT TTTGCTTTTATGTTCTGTGGCTCTTTGGTACCTTCTTAAGGTGTCCATGGTAGAAACCAATATGGACTTAATGCTTGTGC AGTGTCAGTGTAAAATTGTTTTACACTAACATCCAATAGTTTGTCACCATGTTAGAAACTAAACTTTTAATTTGATAAAA TAATGTAATCGCTCCTGAACATGTAGTCTTATGTGGCATAGAATGATTGGATGCGAATGTAAATGTGTTATATAATGAAA ATGCATAAAATTATACTCAACTAATATTATGCTTTATTTTTATTGCAGAAAATTCATAAAATCGTTTATACAAGGTTTCC TTCCTGGAATTGCTTTGAAGATATTCCTCATATTTCTGCCAACAATTTTGATGATAATGTCCAAGTTTGAAGGTTTTATA AGCCTGTCCGGTCTAGAAAGGAGATCAGCCACAAGATATTATATCTTCCAGTTCATTAATGTATTCCTTGGGAGCATTAT TACTGGGACAGCATTCCAACAACTAGATAAATTTATCCACCAGTCTGCAAATGAGTAAGTCCTCTTATATGCTATTAAGA ATTAAGATTATTAAGCATCACTATATGAGACATTACAACTTTTCAAGACTTAAATATGTTTTTAGTCGCTCATTTTACAG TTAGATTTGGTTTTGATCTCAACCAAATTTATAGGGTTTTAGTCCCTACTTTTATAAATAACATTGGTTTCAGTCCCCGT CTTATAATATGTCAATGTTAAATGGTGATGTGACTTATATAGGACCATGTCACCATTTACACACATCCAAAGTAATTCTG TGGCATAGAAGTGCTCGCAATCATTTTTGAAAAATAGGTCATATAATATTATTACTCTGGACATGTGACAATAGTGACAA ACCCTCTATTAGCCACATCACATTTTAACTGTGTGGGATATATTATAAAGCGGGGACAAAAACCAATGTTATTTGAAAAG TAAGGGCCAAAACTATAAAAATTAGGTTACAGGGACCAAAACCAAATTTGTGTATAAAATGAGGGACCAAAGACTTATGA AAGCCAATCTTTAAAAATGGATTTTCTATTTATTTTACTTGGGGCACTGAAGATGGTCTAAGATAGAGAGCTTTCAATTT TCCAATTACCTTTTAGCAGAGCAAAATGTTGCTATGTAGATCTTAGCATTCTCATATTTCAATTGGTTTTCTACACTTAC TTGCCAATGGTTGATTTACTTGCGCATGTTTTCTTCATAATGTAAACAATTGCTTTGCATGCAGAATCCCAAAAACAATT GGTGTCTCCATTCCAATGAAAGCAACTTTCTTCATAACTTACATAATGGTTGATGGGTGGGCTGGATGTGCTGGTGAAAT TTTAAGGTTGAAGCCACTGATATTCTATCATTTAAAAAACTTCTTCTTGGTGAAGACTGAAAAGGACCGCGAAGAAGCAA TGGATCCCGGGACTATTGGTTTCAACACAGGCGAACCTCAAATACAACTTTATTTCTTGCTTGGCCTTGTATATGCAGTG ATCACACCATTTCTTCTTCCATACATCATAGTGTTCTTTGGTTTGGCATATGTTGTCTACCGTCATCAGGTGAAAGTTGG CTCATAAAAGCTCTTCAGTTTTGATGCTTTTAGATGCTGTTTGGACGTGGACCATATGCTCTTTAATCTTTTTATGTCCA TATTACTCCAAATTTTTCCATGTACTCCTGGTTATGAAGTGTGCATGACATCTAATGCTAATGCTTCAAATTGAATGGCA GATTATAAATGTGTATAACCAGGAGTACGAGAGTGCTGCAGCATTCTGGCCTGATATTCATGGACGTATTATATTTGCAT TAGTGATCTCACAGCTGCTGTTAATGGGATTATTGAGTACAAAAGAAGCTGCTAACTCAACTCCATTGCTCATCATTCTC CCAGTTTTGACAATATGGTTCCATTTGTTCTGCAAGGGACGATATGAACCTGCTTTTGTTCAGCACCCATTACAGGTTAG TCCTTATGCCGCAATTGGCATACTCTTTTTACTATTTTTTTTTTAAAATTATACTCGTACAGATGGGATACAACAATGAT TAGATAAATGATAAAAAAATTAGGCTTAATTACATTTCCGGTTCCTCTAATATGGCTCATGTGTGATTTAGTGCCTCGTT AATTTTAGAGCAGATTTAGTCCCTCGGTTTTTTAATTGTCACAGTTTAGCTCCTCCATCAATTTCATTCAACTGAAATAT ATCAAATTCTTATTTTCAAAGCAAAATCTTCAAAAAAAGGGTCAATTTAATCATTGCATGCATTATTTCCCTCAAAACTC ACCAAAATATCAAATTTCAGCTAAAAATTGAAAATACCAAACTTCGCCATCTTTAAACCTTAACCTCGTATCCTGCGAAA TTATTCAAAATTTCAAATTTTTACCAAATTTCTAACTTTTAAATTATTTCATATCTTCCATCCATCAAAAACCCTACTAA GAATATTGGGGGGAAATGATGATCTAAAGATTTTTTAGGCATATGAAAACTGGTAGGCCCATATTTGCTGACTTTTAAAA GCATAGGAACTTTATTAGCTTGGAAACAACTAGGAGGACCAAAATCATATTCTGTCCAAACTAGAGAGACAAAAATGCAA TTAAATCAAATTTTTATGACATTATCAATGACTTGTACAACTTGTAATATATTGCTTCCCTTCTTTGGTTTAAGATTTTA TATCAATTTTATACATTGTATTATAGCCATGTTGTATCCTGATATTTCTTAAATTTACCATATCCCCATTGTACCATATT CATGCTTTCTATCATGGCATCTGTTAATTTTCACTTGTCTTGTGGTGTGAACTTTTTAGGAAGCAATGATGAAAGACACA TTGGAGCGTGCTAGAGAGCCACAGTTGAACTATAAAGAGTTCCTCCAGAATGCATACATCCATCCAGTTTTTAAAAGTGA TGAAGACTCTGACAGTGATGTAATGAGCCAAGAGTTTGAGGATGAGCCTATGCTTGTCCAAACGAAACGCCAGTCTCGGA AAAACACACCTTTGCCTAGCAAACATAGTAGTTCTTTATGAGCATTAAAGGCCTTAGAGTTGATGTAGATGACTAAGTGA 

CDS sequence (LotjaGi1g1v0061600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCGCTTGGTGATATAGGACTTGCAGCGGCGATCAACATCCTTACTGCATTTGCTTTCTTAATAGCATTTGCGGT ACTTCGAATCCAACCCATTAATGATAGGGTGTATTTTCCAAAATGGTATCTGAAGGGTTTAAGGAGCAGTCCGTTGCAAG GAGGGGCGTTTGTGTCCAAGTTTGTCAATTTAGACTTCAGGTCATACATAAGGTTCTTGAATTGGATGCCTGCTGCATTG CAAATGCCGGAACCCGAACTAATTGACCATGCAGGCTTGGACTCTGCAGTATACTTGAGGATCTACTTACTAGGGCTGAA AATATTTGTCCCCATTTCACTCCTAGCATTTTCTGTTATGGTTCCCGTCAATTGGACCAACAACACCTTGGAACGTTCCA ATGTGGAGTATAGTAACATAGATAAGCTTTCTATTTCAAATATCCCAACTGGATCAAATAGATTTTGGACTCATCTGGCA ATGGCTTATCTTTTTACCTTCTGGACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCTACAATGAGATTGTCCTT TCTTGCATCTGAACGACGCCGTCCTGACCAATTTACGGTACTTGTTAGGAATGTACCACCTGATCCTGATGAATCAGTAA GTGAGCTAGTGGAACATTTCTTTTTGGTCAACCATCCAGAGCACTATCTCACGCATCAGGTTGTTTACGATGCAAAGAAA CTTTCTAGTCTAGTTGCTAAGAAGAAGAAAAAGCAGAATTGGCTTGACTACTATGAACTTAAACATTCTAGAAACCAATC CATAAGGCCAACTAAAAAGACTGGTTTTTTAGGTCTTTGCGGTAGTAGCGTGGATGCGATTGATTTTTATACTGCTGAAA TTGAGAAACTATCAGAAGAAATAGAGTTGGAGAGAGATAAGGTGAAGAAAAATCCTAAATCTATTATGCCAGCTGCATTT GTTTCCTTCCGAACTCGCTGGGGTGCAGCTGTTTGTGCACAAACTCAACAAACCAGAAACCCAACTATATGGTTGACTGA GGGGGCTCCAGAACCTCGTGATGTGTATTGGGATAACATGGCAATACCATATGTTTCACTCTCAATAAGGAGGCTTATAA TTGGTGTTGCTTTCTTCTTTCTGACGTTCTTTTTCATGATTCCTATTGCATTTGTGCAATCACTAGCTAATATTGAAGGC ATTGAGAAGGCAGCACCTTTCTTGAAGTCCTTTATTGAAATAAAATTCATAAAATCGTTTATACAAGGTTTCCTTCCTGG AATTGCTTTGAAGATATTCCTCATATTTCTGCCAACAATTTTGATGATAATGTCCAAGTTTGAAGGTTTTATAAGCCTGT CCGGTCTAGAAAGGAGATCAGCCACAAGATATTATATCTTCCAGTTCATTAATGTATTCCTTGGGAGCATTATTACTGGG ACAGCATTCCAACAACTAGATAAATTTATCCACCAGTCTGCAAATGAAATCCCAAAAACAATTGGTGTCTCCATTCCAAT GAAAGCAACTTTCTTCATAACTTACATAATGGTTGATGGGTGGGCTGGATGTGCTGGTGAAATTTTAAGGTTGAAGCCAC TGATATTCTATCATTTAAAAAACTTCTTCTTGGTGAAGACTGAAAAGGACCGCGAAGAAGCAATGGATCCCGGGACTATT GGTTTCAACACAGGCGAACCTCAAATACAACTTTATTTCTTGCTTGGCCTTGTATATGCAGTGATCACACCATTTCTTCT TCCATACATCATAGTGTTCTTTGGTTTGGCATATGTTGTCTACCGTCATCAGATTATAAATGTGTATAACCAGGAGTACG AGAGTGCTGCAGCATTCTGGCCTGATATTCATGGACGTATTATATTTGCATTAGTGATCTCACAGCTGCTGTTAATGGGA TTATTGAGTACAAAAGAAGCTGCTAACTCAACTCCATTGCTCATCATTCTCCCAGTTTTGACAATATGGTTCCATTTGTT CTGCAAGGGACGATATGAACCTGCTTTTGTTCAGCACCCATTACAGGAAGCAATGATGAAAGACACATTGGAGCGTGCTA GAGAGCCACAGTTGAACTATAAAGAGTTCCTCCAGAATGCATACATCCATCCAGTTTTTAAAAGTGATGAAGACTCTGAC AGTGATGTAATGAGCCAAGAGTTTGAGGATGAGCCTATGCTTGTCCAAACGAAACGCCAGTCTCGGAAAAACACACCTTT GCCTAGCAAACATAGTAGTTCTTTATGA 

Protein sequence (LotjaGi1g1v0061600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASLGDIGLAAAINILTAFAFLIAFAVLRIQPINDRVYFPKWYLKGLRSSPLQGGAFVSKFVNLDFRSYIRFLNWMPAAL QMPEPELIDHAGLDSAVYLRIYLLGLKIFVPISLLAFSVMVPVNWTNNTLERSNVEYSNIDKLSISNIPTGSNRFWTHLA MAYLFTFWTCYILKREYQIVATMRLSFLASERRRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPEHYLTHQVVYDAKK LSSLVAKKKKKQNWLDYYELKHSRNQSIRPTKKTGFLGLCGSSVDAIDFYTAEIEKLSEEIELERDKVKKNPKSIMPAAF VSFRTRWGAAVCAQTQQTRNPTIWLTEGAPEPRDVYWDNMAIPYVSLSIRRLIIGVAFFFLTFFFMIPIAFVQSLANIEG IEKAAPFLKSFIEIKFIKSFIQGFLPGIALKIFLIFLPTILMIMSKFEGFISLSGLERRSATRYYIFQFINVFLGSIITG TAFQQLDKFIHQSANEIPKTIGVSIPMKATFFITYIMVDGWAGCAGEILRLKPLIFYHLKNFFLVKTEKDREEAMDPGTI GFNTGEPQIQLYFLLGLVYAVITPFLLPYIIVFFGLAYVVYRHQIINVYNQEYESAAAFWPDIHGRIIFALVISQLLLMG LLSTKEAANSTPLLIILPVLTIWFHLFCKGRYEPAFVQHPLQEAMMKDTLERAREPQLNYKEFLQNAYIHPVFKSDEDSD SDVMSQEFEDEPMLVQTKRQSRKNTPLPSKHSSSL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 5 5 -
PANTHER 3 752 750 0.0
PANTHER 3 752 750 0.0
Phobius 6 28 23 -
Pfam 7 176 170 2.2E-50
TMHMM 10 28 19 -
Phobius 29 100 72 -
Phobius 101 123 23 -
TMHMM 101 123 23 -
Phobius 124 154 31 -
Phobius 155 173 19 -
TMHMM 155 173 19 -
Phobius 174 371 198 -
Pfam 197 359 163 2.4E-46
Coils 287 307 21 -
Pfam 370 642 273 2.3E-82
TMHMM 372 394 23 -
Phobius 372 396 25 -
Phobius 397 415 19 -
Phobius 416 443 28 -
TMHMM 421 443 23 -
Phobius 444 463 20 -
TMHMM 464 486 23 -
Phobius 464 483 20 -
Phobius 484 570 87 -
TMHMM 501 523 23 -
TMHMM 571 593 23 -
Phobius 571 601 31 -
Phobius 602 626 25 -
TMHMM 623 642 20 -
Phobius 627 644 18 -
Phobius 645 649 5 -
TMHMM 649 667 19 -
Phobius 650 668 19 -
Phobius 669 755 87 -
MobiDBLite 716 755 40 -
MobiDBLite 738 755 18 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0061600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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