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LotjaGi1g1v0061600.3

Overview

Field Value
Gene ID LotjaGi1g1v0061600
Transcript ID LotjaGi1g1v0061600.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description ERD (Early-responsive to dehydration stress) family protein; TAIR: AT4G22120.1 ERD (early-responsive to dehydration stress) family protein; Swiss-Prot: sp|Q5XEZ5|CSC1_ARATH Calcium permeable stress-gated cation channel 1; TrEMBL-Plants: tr|B0BLA8|B0BLA8_LOTJA CM0545.360.nc protein; Found in the gene: LotjaGi1g1v0061600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:8606441..8613694) extracted from Lotus japonicus Gifu genome v1.2.

AGGCGAATGGCTTCGCTTGGTGATATAGGACTTGCAGCGGCGATCAACATCCTTACTGCATTTGCTTTCTTAATAGCATT TGCGGTACTTCGAATCCAACCCATTAATGATAGGGTGTATTTTCCAAAATGGTATCTGAAGGGTTTAAGGAGCAGTCCGT TGCAAGGAGGGGCGTTTGTGTCCAAGTTTGTCAATTTAGACTTCAGGTCATACATAAGGTTCTTGAATTGGATGCCTGCT GCATTGCAAATGCCGGAACCCGAACTAATTGACCATGCAGGCTTGGACTCTGCAGTATACTTGAGGATCTACTTACTAGG GTATGCTCTAATAGAATTTAGTTTCCCTATAGCAGCGAGTGCGTGTTTGGATAACACTGTAGATTTCATGTTGGAAGGAG ATTGATTCTGGAAGAAGCTACTCCTAGTAGCTTTATGGTAGTAAAATTGATTCAGGGAGATCTGAAGATGAATCCAAAAT TGATATGAACATTGTGAAGAACTTGCTAGTATTCAGACTGATTTATGAGCAGCTTAATGAGTACATACTTTCCCCAAGGA TTAAGATCCTTTGTCCCCATTTGATGTCCCCTATCCTATCCCACCAATTAAATTGTGTCATGTCAATTAAAGAATGCATG TTTATGACAATTATAAACTTACATAGGTGATTTTTAATTGTCATAACACAATTTTATTGGTGGGACAGAGAAGGGGACAC CAAATAGGGACAAAGGATTTCAATCCTTGTCACCAGGGCTTATTTTTATGATAATTCCATAACCGTAATTCCTGATAAAA ATATTTACTGAGTGAATTTTTTCCTACACATTAAATTGTTCCAACAGAAGTTTCTTTTTCAGAATTATCCCTTTCTTCTT GCCCCACAATTAGTTTTATCATGTCTTTCCCTTTTGACTAACTGCTTTCCCTTATTCAATTCAAGTGCAGGCTGAAAATA TTTGTCCCCATTTCACTCCTAGCATTTTCTGTTATGGTTCCCGTCAATTGGACCAACAACACCTTGGAACGTTCCAATGT GGAGTATAGTAACATAGATAAGCTTTCTATTTCAAATATCCCAACTGGATCAAATAGGTATACAAACTTTTCAGTTGGTT GGACTTTTTCTTATTTTCTACCTGTTTTGGCTGTTTATATAATCTATCATTTAATATGAACTTTATATTAACATTCTATT TATCAATATATGTGATTCTTCATTTAAAAGAATAATACATATTAGTATGATACTTTCATGTGTATCTTCTTGATCAATTG GTAGAACTAATTTTCTAATGATGTAATATATGTTTATTCCTATGTTTAAAAGAATAGTACATATTAATATGTTAACTTGC ATTATTTTGTCGCTGTTGATATATTAGCATTTATAAACCTCTAAGCAATTTCATGCAAATATTCCTGATGAATTTGAAAC AAATCAATAGCTCTTCTGGTTGTTGGTACTATAAAACCTGTTTTCATTCCTGAAGTAGCTGCCAAGTTTTTCATACAAGC ATGTTTATCTTCCAATAACTCATTACATGTATTGCAGATTTTGGACTCATCTGGCAATGGCTTATCTTTTTACCTTCTGG ACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCTACAATGAGATTGTCCTTTCTTGCATCTGAACGACGCCGTCC TGACCAATTTACGGTAAGATCAAGTTTTATCACATTGAAGTACTGAACAAAGATGGTAAGCTGATGATCATAGTAGCATA GCACCAATTCTATGAAAAGGATTTATATCATAAGATTGGTAAACTCCTCCTAATTCCTGAGCTCTGACATGACATGGAAG GAATGTATTATGCTGATTTCGAGTAATGATCCAAGTGCACCTTCCTATCTTGCTTGGAAGAAATAGAGGAAGAACTTTAT GCAAATAATTATGTCCTAACTGGCCTGGTTGCTTACCTTTCAGAATTATAAATGTAATTAAGTATAGTACTCTACCCTGT CTTGTCATAAATATCTTGTTTTATGATTTGGGAAATCAAATATCCATAAAATCAAGGTAAATGTGTTTAAAAGCAGTTTT ACACTGATTACTAAAACATTCATTAATTTTATTTCTAGATTTAAGTTTACAAGCATTAATTATTCGTAATATTTACTCTG TCTGAATATATAATTATCTGTTATACAAAGTCACAATGCTCTTTAACAGTTTAACTTAGGTTTTTTATCTTGTTCCCCTG TGCTCCTTCTTCAAGAAATTACTGTACATCTGTGCAGGTACTTGTTAGGAATGTACCACCTGATCCTGATGAATCAGTAA GTGAGCTAGTGGAACATTTCTTTTTGGTCAACCATCCAGAGCACTATCTCACGCATCAGGTCTGATCCTTTTTTGCTACA ACCTTACATGCCTAATTTTGTCTTTGTTTTGATATGGTTGTGTAATTTGAACTATTTAGTTATATACCAAAACAGTAAAG CTTACCTGTCATGATTTCATATTCATACACATTTTTACTAGTATTCAAATGGATAGCTTTTACCTTGTATGATGAGTAAA TAATAAGATATTTAGGGTTTAGGGTTCAAGTTTTCGTGTGGTTGTGTTGTTTTCCAATATGGTCTGGTAAGTTTCAGTGC AGAACAGTTGCCTAATGTTTGACGACCCTTTCTTTCTTTCTTTCAGTTTTTGTTTCTGTTAATTATATATTGTAGATTGG AAAATAAATTTCAGGCGAAACTTCTTTTGTTGTTTGTAGCATGATCAAGTTTATGGCCTTCTTGAGAAATTTTTGTTCCA TACACTGTTGAAATAGATTTTCTCAATGGGATTATCTCTCATTATTAAATAGAATATCACACCAGTTAGCTTTTTAAAAA ACGTTCCTGCTTAAGATTTCGTCTAAGGTTAGAATCACCCAAATTATTATGACTAAAAAACCACCTTTTATTATTACCAT TTTCTGGGAACATAATGGATAGTTTTACATTAAATTGAAACTTTGATGGAGTTCTCCCTCAATTGGCCATTTTTCATACA ATAGCCTTCATTTGATTTTATTGTTATAATGATATTGGACCCTTGGATCACATAACATAATATCAAGCTTAGTTCTTTGT GTTTTATACTACCAACCATGTTGTTTTGCTGTTTTTCCCTTACTTTTAGAGAAATTTTTGCAGGTTGTTTACGATGCAAA GAAACTTTCTAGTCTAGTTGCTAAGAAGAAGAAAAAGCAGAATTGGCTTGACTACTATGAACTTAAACATTCTAGAAACC AATCCATAAGGCCAACTAAAAAGGTAGGCCTTATCCAATAAGCCAGTTCATATGAACTCCAAATTATCTTCCATTATTTT TTTCTCTTCAGCATAAGCTCTTGCCGTTTGAAAATTATTTGGTTTCTTTTTTCTTTCCTCTTGCGCCATGTAATTCCCAT GATGAACATTGTCCTTGCAGACTGGTTTTTTAGGTCTTTGCGGTAGTAGCGTGGATGCGATTGATTTTTATACTGCTGAA ATTGAGAAACTATCAGAAGAAGTAAGCATTACCTTCTGTGCATATTTGACAATTGCCACCAGAATTTCATGTGCTTCCTT TATAATTTCATTACATATAAATACTTTGGTAGATATCTTTTTCTCAGGGTTGATACCCCCTAAACCCTAAAATTAAGAAT TTGATATGATTTGATGCTTCTGTTAACTTGCAGATAGAGTTGGAGAGAGATAAGGTGAAGAAAAATCCTAAATCTATTAT GCCAGCTGCATTTGTTTCCTTCCGAACTCGCTGGGGTGCAGCTGTTTGTGCACAAACTCAACAAACCAGAAACCCAACTA TATGGTTGACTGAGGGGGCTCCAGAACCTCGTGATGTGTATTGGGATAACATGGCAATACCATATGTTTCACTCTCAATA AGGAGGCTTATAATTGGTGTTGCTTTCTTCTTTCTGACGTTCTTTTTCATGATTCCTATTGCATTTGTGCAATCACTAGC TAATATTGAAGGCATTGAGAAGGCAGCACCTTTCTTGAAGTCCTTTATTGAAATGTAAGCATTATTTTTTCTTCCCATGT CATACTTTTCCTTTTTTTTAATTAATACATATATCTGTTGGCTGCTTGACATTGTAAACAAAATATATTGAATGGTGTTG AAACATTTTGCTTTTATGTTCTGTGGCTCTTTGGTACCTTCTTAAGGTGTCCATGGTAGAAACCAATATGGACTTAATGC TTGTGCAGTGTCAGTGTAAAATTGTTTTACACTAACATCCAATAGTTTGTCACCATGTTAGAAACTAAACTTTTAATTTG ATAAAATAATGTAATCGCTCCTGAACATGTAGTCTTATGTGGCATAGAATGATTGGATGCGAATGTAAATGTGTTATATA ATGAAAATGCATAAAATTATACTCAACTAATATTATGCTTTATTTTTATTGCAGAAAATTCATAAAATCGTTTATACAAG GTTTCCTTCCTGGAATTGCTTTGAAGATATTCCTCATATTTCTGCCAACAATTTTGATGATAATGTCCAAGTTTGAAGGT TTTATAAGCCTGTCCGGTCTAGAAAGGAGATCAGCCACAAGATATTATATCTTCCAGTTCATTAATGTATTCCTTGGGAG CATTATTACTGGGACAGCATTCCAACAACTAGATAAATTTATCCACCAGTCTGCAAATGAGTAAGTCCTCTTATATGCTA TTAAGAATTAAGATTATTAAGCATCACTATATGAGACATTACAACTTTTCAAGACTTAAATATGTTTTTAGTCGCTCATT TTACAGTTAGATTTGGTTTTGATCTCAACCAAATTTATAGGGTTTTAGTCCCTACTTTTATAAATAACATTGGTTTCAGT CCCCGTCTTATAATATGTCAATGTTAAATGGTGATGTGACTTATATAGGACCATGTCACCATTTACACACATCCAAAGTA ATTCTGTGGCATAGAAGTGCTCGCAATCATTTTTGAAAAATAGGTCATATAATATTATTACTCTGGACATGTGACAATAG TGACAAACCCTCTATTAGCCACATCACATTTTAACTGTGTGGGATATATTATAAAGCGGGGACAAAAACCAATGTTATTT GAAAAGTAAGGGCCAAAACTATAAAAATTAGGTTACAGGGACCAAAACCAAATTTGTGTATAAAATGAGGGACCAAAGAC TTATGAAAGCCAATCTTTAAAAATGGATTTTCTATTTATTTTACTTGGGGCACTGAAGATGGTCTAAGATAGAGAGCTTT CAATTTTCCAATTACCTTTTAGCAGAGCAAAATGTTGCTATGTAGATCTTAGCATTCTCATATTTCAATTGGTTTTCTAC ACTTACTTGCCAATGGTTGATTTACTTGCGCATGTTTTCTTCATAATGTAAACAATTGCTTTGCATGCAGAATCCCAAAA ACAATTGGTGTCTCCATTCCAATGAAAGCAACTTTCTTCATAACTTACATAATGGTTGATGGGTGGGCTGGATGTGCTGG TGAAATTTTAAGGTTGAAGCCACTGATATTCTATCATTTAAAAAACTTCTTCTTGGTGAAGACTGAAAAGGACCGCGAAG AAGCAATGGATCCCGGGACTATTGGTTTCAACACAGGCGAACCTCAAATACAACTTTATTTCTTGCTTGGCCTTGTATAT GCAGTGATCACACCATTTCTTCTTCCATACATCATAGTGTTCTTTGGTTTGGCATATGTTGTCTACCGTCATCAGGTGAA AGTTGGCTCATAAAAGCTCTTCAGTTTTGATGCTTTTAGATGCTGTTTGGACGTGGACCATATGCTCTTTAATCTTTTTA TGTCCATATTACTCCAAATTTTTCCATGTACTCCTGGTTATGAAGTGTGCATGACATCTAATGCTAATGCTTCAAATTGA ATGGCAGATTATAAATGTGTATAACCAGGAGTACGAGAGTGCTGCAGCATTCTGGCCTGATATTCATGGACGTATTATAT TTGCATTAGTGATCTCACAGCTGCTGTTAATGGGATTATTGAGTACAAAAGAAGCTGCTAACTCAACTCCATTGCTCATC ATTCTCCCAGTTTTGACAATATGGTTCCATTTGTTCTGCAAGGGACGATATGAACCTGCTTTTGTTCAGCACCCATTACA GGTTAGTCCTTATGCCGCAATTGGCATACTCTTTTTACTATTTTTTTTTTAAAATTATACTCGTACAGATGGGATACAAC AATGATTAGATAAATGATAAAAAAATTAGGCTTAATTACATTTCCGGTTCCTCTAATATGGCTCATGTGTGATTTAGTGC CTCGTTAATTTTAGAGCAGATTTAGTCCCTCGGTTTTTTAATTGTCACAGTTTAGCTCCTCCATCAATTTCATTCAACTG AAATATATCAAATTCTTATTTTCAAAGCAAAATCTTCAAAAAAAGGGTCAATTTAATCATTGCATGCATTATTTCCCTCA AAACTCACCAAAATATCAAATTTCAGCTAAAAATTGAAAATACCAAACTTCGCCATCTTTAAACCTTAACCTCGTATCCT GCGAAATTATTCAAAATTTCAAATTTTTACCAAATTTCTAACTTTTAAATTATTTCATATCTTCCATCCATCAAAAACCC TACTAAGAATATTGGGGGGAAATGATGATCTAAAGATTTTTTAGGCATATGAAAACTGGTAGGCCCATATTTGCTGACTT TTAAAAGCATAGGAACTTTATTAGCTTGGAAACAACTAGGAGGACCAAAATCATATTCTGTCCAAACTAGAGAGACAAAA ATGCAATTAAATCAAATTTTTATGACATTATCAATGACTTGTACAACTTGTAATATATTGCTTCCCTTCTTTGGTTTAAG ATTTTATATCAATTTTATACATTGTATTATAGCCATGTTGTATCCTGATATTTCTTAAATTTACCATATCCCCATTGTAC CATATTCATGCTTTCTATCATGGCATCTGTTAATTTTCACTTGTCTTGTGGTGTGAACTTTTTAGGAAGCAATGATGAAA GACACATTGGAGCGTGCTAGAGAGCCACAGTTGAACTATAAAGAGTTCCTCCAGAATGCATACATCCATCCAGTTTTTAA AAGTGATGAAGACTCTGACAGTGATGTAATGAGCCAAGAGTTTGAGGATGAGCCTATGCTTGTCCAAACGAAACGCCAGT CTCGGAAAAACACACCTTTGCCTAGCAAACATAGTAGTTCTTTATGAGCATTAA 

CDS sequence (LotjaGi1g1v0061600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCGCTTGGTGATATAGGACTTGCAGCGGCGATCAACATCCTTACTGCATTTGCTTTCTTAATAGCATTTGCGGT ACTTCGAATCCAACCCATTAATGATAGGGTGTATTTTCCAAAATGGTATCTGAAGGGTTTAAGGAGCAGTCCGTTGCAAG GAGGGGCGTTTGTGTCCAAGTTTGTCAATTTAGACTTCAGGTCATACATAAGGTTCTTGAATTGGATGCCTGCTGCATTG CAAATGCCGGAACCCGAACTAATTGACCATGCAGGCTTGGACTCTGCAGTATACTTGAGGATCTACTTACTAGGATTTTG GACTCATCTGGCAATGGCTTATCTTTTTACCTTCTGGACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCTACAA TGAGATTGTCCTTTCTTGCATCTGAACGACGCCGTCCTGACCAATTTACGGTACTTGTTAGGAATGTACCACCTGATCCT GATGAATCAGTAAGTGAGCTAGTGGAACATTTCTTTTTGGTCAACCATCCAGAGCACTATCTCACGCATCAGGTTGTTTA CGATGCAAAGAAACTTTCTAGTCTAGTTGCTAAGAAGAAGAAAAAGCAGAATTGGCTTGACTACTATGAACTTAAACATT CTAGAAACCAATCCATAAGGCCAACTAAAAAGACTGGTTTTTTAGGTCTTTGCGGTAGTAGCGTGGATGCGATTGATTTT TATACTGCTGAAATTGAGAAACTATCAGAAGAAATAGAGTTGGAGAGAGATAAGGTGAAGAAAAATCCTAAATCTATTAT GCCAGCTGCATTTGTTTCCTTCCGAACTCGCTGGGGTGCAGCTGTTTGTGCACAAACTCAACAAACCAGAAACCCAACTA TATGGTTGACTGAGGGGGCTCCAGAACCTCGTGATGTGTATTGGGATAACATGGCAATACCATATGTTTCACTCTCAATA AGGAGGCTTATAATTGGTGTTGCTTTCTTCTTTCTGACGTTCTTTTTCATGATTCCTATTGCATTTGTGCAATCACTAGC TAATATTGAAGGCATTGAGAAGGCAGCACCTTTCTTGAAGTCCTTTATTGAAATAAAATTCATAAAATCGTTTATACAAG GTTTCCTTCCTGGAATTGCTTTGAAGATATTCCTCATATTTCTGCCAACAATTTTGATGATAATGTCCAAGTTTGAAGGT TTTATAAGCCTGTCCGGTCTAGAAAGGAGATCAGCCACAAGATATTATATCTTCCAGTTCATTAATGTATTCCTTGGGAG CATTATTACTGGGACAGCATTCCAACAACTAGATAAATTTATCCACCAGTCTGCAAATGAAATCCCAAAAACAATTGGTG TCTCCATTCCAATGAAAGCAACTTTCTTCATAACTTACATAATGGTTGATGGGTGGGCTGGATGTGCTGGTGAAATTTTA AGGTTGAAGCCACTGATATTCTATCATTTAAAAAACTTCTTCTTGGTGAAGACTGAAAAGGACCGCGAAGAAGCAATGGA TCCCGGGACTATTGGTTTCAACACAGGCGAACCTCAAATACAACTTTATTTCTTGCTTGGCCTTGTATATGCAGTGATCA CACCATTTCTTCTTCCATACATCATAGTGTTCTTTGGTTTGGCATATGTTGTCTACCGTCATCAGATTATAAATGTGTAT AACCAGGAGTACGAGAGTGCTGCAGCATTCTGGCCTGATATTCATGGACGTATTATATTTGCATTAGTGATCTCACAGCT GCTGTTAATGGGATTATTGAGTACAAAAGAAGCTGCTAACTCAACTCCATTGCTCATCATTCTCCCAGTTTTGACAATAT GGTTCCATTTGTTCTGCAAGGGACGATATGAACCTGCTTTTGTTCAGCACCCATTACAGGAAGCAATGATGAAAGACACA TTGGAGCGTGCTAGAGAGCCACAGTTGAACTATAAAGAGTTCCTCCAGAATGCATACATCCATCCAGTTTTTAAAAGTGA TGAAGACTCTGACAGTGATGTAATGAGCCAAGAGTTTGAGGATGAGCCTATGCTTGTCCAAACGAAACGCCAGTCTCGGA AAAACACACCTTTGCCTAGCAAACATAGTAGTTCTTTATGA 

Protein sequence (LotjaGi1g1v0061600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASLGDIGLAAAINILTAFAFLIAFAVLRIQPINDRVYFPKWYLKGLRSSPLQGGAFVSKFVNLDFRSYIRFLNWMPAAL QMPEPELIDHAGLDSAVYLRIYLLGFWTHLAMAYLFTFWTCYILKREYQIVATMRLSFLASERRRPDQFTVLVRNVPPDP DESVSELVEHFFLVNHPEHYLTHQVVYDAKKLSSLVAKKKKKQNWLDYYELKHSRNQSIRPTKKTGFLGLCGSSVDAIDF YTAEIEKLSEEIELERDKVKKNPKSIMPAAFVSFRTRWGAAVCAQTQQTRNPTIWLTEGAPEPRDVYWDNMAIPYVSLSI RRLIIGVAFFFLTFFFMIPIAFVQSLANIEGIEKAAPFLKSFIEIKFIKSFIQGFLPGIALKIFLIFLPTILMIMSKFEG FISLSGLERRSATRYYIFQFINVFLGSIITGTAFQQLDKFIHQSANEIPKTIGVSIPMKATFFITYIMVDGWAGCAGEIL RLKPLIFYHLKNFFLVKTEKDREEAMDPGTIGFNTGEPQIQLYFLLGLVYAVITPFLLPYIIVFFGLAYVVYRHQIINVY NQEYESAAAFWPDIHGRIIFALVISQLLLMGLLSTKEAANSTPLLIILPVLTIWFHLFCKGRYEPAFVQHPLQEAMMKDT LERAREPQLNYKEFLQNAYIHPVFKSDEDSDSDVMSQEFEDEPMLVQTKRQSRKNTPLPSKHSSSL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 6 6 -
PANTHER 3 105 103 0.0
PANTHER 3 105 103 0.0
Pfam 7 105 99 1.7E-20
Phobius 7 30 24 -
TMHMM 7 29 23 -
Phobius 31 100 70 -
Phobius 101 124 24 -
TMHMM 101 123 23 -
PANTHER 106 703 598 0.0
PANTHER 106 703 598 0.0
Phobius 125 322 198 -
Pfam 148 310 163 2.1E-46
Coils 238 258 21 -
Pfam 321 593 273 2.0E-82
Phobius 323 347 25 -
TMHMM 323 345 23 -
Phobius 348 366 19 -
Phobius 367 394 28 -
TMHMM 372 394 23 -
Phobius 395 414 20 -
TMHMM 415 437 23 -
Phobius 415 434 20 -
Phobius 435 521 87 -
TMHMM 452 474 23 -
Phobius 522 552 31 -
TMHMM 522 544 23 -
Phobius 553 577 25 -
TMHMM 574 593 20 -
Phobius 578 595 18 -
Phobius 596 600 5 -
TMHMM 600 618 19 -
Phobius 601 619 19 -
Phobius 620 706 87 -
MobiDBLite 667 706 40 -
MobiDBLite 689 706 18 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0061600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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