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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0062800 |
| Transcript ID | LotjaGi1g1v0062800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coiled-coil domain-containing protein 21, putative isoform 2; TAIR: AT1G05060.1 coiled-coil protein; Swiss-Prot: sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2; TrEMBL-Plants: tr|I1M7F0|I1M7F0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0062800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8750833..8755107) extracted from Lotus japonicus Gifu genome v1.2.
CACAAGTTTATTTTGCATTCAAAGAAAGAAACAACATAACCGACACAGAGTAATCTGGTTGGAACAAGAACAACATCATG AGTTTTCTCGCGGGAAGATTAGCAGGCAAAGAAGCTGCTTATTTTTTCCAGGAATCCAAACAAGCTGTCGGGAAATTATC CCAAAAGAATCCTCATCCCAATCCCACCACCACCGCCGCCACCACCGTCGCCACCACCGTCGCCGATGCGGAGGCTGCCG CCGATGTGCTTCCTGAGGTTCTGAGGCACTCCCTTCCTTCCAAAGTGCTCAGAAACGACACCGCAACCTCTTCATCTTTC TTAGCTTCCAAATGGGTCCTTCCTTCTGACCCCAAAATCCAATCTTCCCTCTCCCCTGATGCTATCAACCCTCTCCGTTC TTACCTTTCACTTCCCCAGGTCACGTTTGGCCCCAAAAGGTGATTATTCCTTTCTCCTCAAATTAACTAATCATATGAGG TTTTAGCATTTGGGTTTCCATTTTTTTTTTAAGTTGATGATGGTTTGCTGGTTGCAGGTGGGAACTGCCTCAAGCAACAG GTACAGTTTCAGCTTCAACAGCTAATGACTTGCGTCAAGATAGGTATAGTGTTCAGGCTAACCCGGAGAAGTTAAAAGCT GCAGCTGAAGGGCTTGCTCATGGTACATTTTATTCTTTTCATTAACTTGCTCTTTTGGTAAATGCTCTCTTTTGCTGATT TGTGATTTTTGTAAGATGTGAATGCCAGAAGCATTTTTCAATATTTGTGGATTGAAAATAGGGGTGTGTGTGTCTGTGTG AGTGTGATATGTGGATGAATCTCTGATGCAACATCAGGAAAGAATTTGTTTTTTCTTGCCTAAGAATATGTTCATTGTTG TCAAAGTATTTACTTGGAAAATTTATGTATACTATATTTGGTACCCTCAATCTACACATCACATCTCTGTGGAAATATAG TGAAACTGTACTATCAGCTGATGGTTGGTAGAAAACTGAGGGTGTGGAGAGGTTCACCATCACTTATGGTCATTCTATGG TTACTTTACAGAATGTGTTAATCTCTGTTTAACCTTGATTAAATATGTTAAGCATGGGGCACTTCTACAGTTTTACTATG CAACTTGGTCTAGCCAGTTTGAGTGGATGTGGGAATATAAATGTTGAGGGTGTCACAGGGGAGTTTAGACAATTTATTGG GTTTGAAGAGCATATTAATGAGTGAGGGAAGTTGTGAAGCTTAGAGTTTCTCATTGATTACACGAGCTAAAGTTAAACCT TCATAGTTTCCTCGTAACAATAGAGAAACTTGTGGTTATGATTTCAAATTAGCAATATTTGGAAATTTAAGTCACTGTTG CTGTAGGCTGTTCAAGGCTTATTTTTGGATTTGTTGGACTTTACTTCAAGGGCAACCTATTAGCTTGAGATTTAGACTGA AATGTTTATGTTTTGAATAAATTGTGAATAAGGAAGAGGTAATTAAGGCATACATCATCTCCGGTTTAAAGAGAGAGGGG GGGGGGAGGGGGGGGGGGTAACATATTATTTGGGCAGAAGTTACCTTCTGTTATAAGTAGGGTTGAGTATCCAGTAATAG GGTTAGCAATAAATTCAAAACAGGCGTTCTTATCTCAGTCTTTGGACAAAGTATGAATTAGATTATGAAAAACAAAAGTG GGGCATGCTACTATGGGGTTGTTAACAGAACCCTGAGAGATGTGGAGAAACTTATAGGGATCATAGTCACTAATAGCATG CAATAGCACTTGCTACTCTCACTGTTGAAATTGCACTGTTTATATGTACAGCTTTGTGTATTTTAGTTTATACACACTAT ACCTATGAAGATACATGCATTGGTATCCTGCATTTTAGGATGCTGAGTCCAGGCAATAACCTCGCTTTCTTCTAATCAAA TTACTACAACATCAAAATAGGCGGTTATTTTCATTAAGATATTGATTTATGGCTTTATCTGACTTTGTTGTGCTTAGCAT TCCAATAATGTTGGGTAAAAAGGTGCCATCCGGCAACTGTTTTGATGATGGTACCCATAATTTCTAATGGAGTTTTTTTT TTCTTTTCAATTTTATAGTTGGAAAGGCATTTGCTGCTGCAACTGCAATTATATTTGGTAGTGCTGCACTGGTATTTGGT TTGGCGGCCTCTAAGTTAGAGTTGCATAATGTAAGTAATTTTAGGTATATGTTGACTCTAGAACTCTATTTAACAAGTTC TTTTGTACTATTCGCATGCGCTTTTTTTGGCTTTCGTAAGGAAGAAATTAATTAACTCACTTGAATGCCTACCTCGCAAC TATTCCATTTTCTGTCATCATTATTCATGTTAAGTGCACATTTAGGACCATAAAACTTCTTCCCATAAAACAAAGCATTT TGTCGTTAATGGCTTTTCAATTCTATCAAAGAGACTATGATGTAGCCTTAAATTGCAAATTCCAGTTTCTTGACTTCTTG ATCCTAATATTTTGTTGTTTTAACAGATCAGTGACCTGAAAACTAAGGGGAAAGACTTTGTTGAGCCACAGCTTGGAAAT ATCGAAAAGCAATTTATTCCCTTGAAAATATGGGTATTTTTTATATTGCATTTCTTTTTTACTTCTGAATATTTCAATTG ACAGGCATAACTCAAAACTTTGGTTTGTAGGCTGAGAATATGTCAAGAAAATGGCATTTGGAAAGGGACGATGTTAAGCA GAAGACAGTAGTAAAGGAGCTATCTAAAATTTGGGGTCCTAAAACATCAGATTGATATTTAAACTTTTGTTTGTTTTCCT TTTCAATTTGCTTCAAAAATAGTGACTTAGGCGATTGGTAAATAATTTGGATGAAGTGTGTCCCTGGCTGTTATAGTGGT TGTAGATGTGAAAGCTTGCTGGAGAGTAAAAGTAGTGCAATCAATAATTAAGTTGATAGTAAATGGAACAATATTGTTGT TTTGGTTAATTCAACAATTACTTTGTTTTTGGGAGCAAAATAGATGATAGATATACTGGATGGTGATAGTAAATATAGCA TTGTTGGGATTGTATGTATATATTCATGTATTTTTTGTATTGAATTAAAAGTTTGGGTGGGTTCAGCTCCGATCGCCACT ATGGGTCAGAGCATGCCTCTTAAGACATATGGTCGCTACCGATCGTTCACCAACACAATCCTCACATCGGCAACCGGATT TAAACTCACAACCTTCTGAGCCGTCCATACCAATTGAGTGAACATGTGTTATGCAAATTATTAGGCTTAATTGCACTTTT GGTCCCTCAACTTTGACCTTCCTGCGAAAATCGTCCCCAAACTTCAAAATTAGCAAAAACCATCCTCAACGTTTACACTC TGTTGCAAAACTGGTCAGTCGTTACACTTCCGTCTAAAAACTAACGTTTTCTGGGTAAAAAATAATAAAATAAGAAAAAA CTTCATCATCTTCATCTTCTTCATACCTTCAAACTCAGAATTCCAGAAAAAACAAAAAAAAAATTCATGATTCAAGAATC TCATTACAAACTAACAATTAATCAAGCATAAATTCTGAGGCACAAAAATCTAGCGGTGGAGAAGTTGGCAAACGATCTGG GTTTCTCTGAGCTTCAAAACCAGCATCAACCTTCCATAAATCAACCCCAAATGTTTATTTGAGCTTCAAAACCAACTCAA AACTTGATACGAGTTCCATTGTCGTTGCAAATCTGGGTTGGATTAAAGATGATGAGGTGAAGAAGAGTAATATTCTCCCA TCAACAAACCCAGAAAAAAACCCATTTTCTCGCGCTCTGCTTCTCGCTTGTGCTGCTTCGGCGTGACGTGACGTAGCGAA CCAGGTGTTGGGTTGTTGCAGCACATCTCACAGAGGATAGGGGTTCAGATCCTATCTTCGTGGTGGTGCAAGACCGCTTA AGCGTTCCTTCTTTGATCTTCGCCTTGTCGCTCACTGTGCCGCTCACCGTTTGATGTGTTGTTGGCCGGAACATGGTGAC GGCAATGAATATAGCAAAGTGGATTAGTGTCGTTTCCTTTGAAGATGAAAAATTATTATCAGCAGTTGAATTTTTTTTCC TTTCTAATGTTTCTTAAAATTATTGTAGGCACTCTTGTGCTTTTTGGGTGAGGATGAAGAGATGATAAATAATTCATTTT TTTGAGTTTTTTTGTTGTTAGGGATGAGGATGATGAAAGACTATTGGAGATAATGATGAGTAAATTTCATATTCTGAGTT TTTGTTGTAAGATGATGAATAAAGATTAATTTTCT
CDS sequence (LotjaGi1g1v0062800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTTCTCGCGGGAAGATTAGCAGGCAAAGAAGCTGCTTATTTTTTCCAGGAATCCAAACAAGCTGTCGGGAAATT ATCCCAAAAGAATCCTCATCCCAATCCCACCACCACCGCCGCCACCACCGTCGCCACCACCGTCGCCGATGCGGAGGCTG CCGCCGATGTGCTTCCTGAGGTTCTGAGGCACTCCCTTCCTTCCAAAGTGCTCAGAAACGACACCGCAACCTCTTCATCT TTCTTAGCTTCCAAATGGGTCCTTCCTTCTGACCCCAAAATCCAATCTTCCCTCTCCCCTGATGCTATCAACCCTCTCCG TTCTTACCTTTCACTTCCCCAGGTCACGTTTGGCCCCAAAAGGTGGGAACTGCCTCAAGCAACAGGTACAGTTTCAGCTT CAACAGCTAATGACTTGCGTCAAGATAGGTATAGTGTTCAGGCTAACCCGGAGAAGTTAAAAGCTGCAGCTGAAGGGCTT GCTCATGTTGGAAAGGCATTTGCTGCTGCAACTGCAATTATATTTGGTAGTGCTGCACTGGTATTTGGTTTGGCGGCCTC TAAGTTAGAGTTGCATAATATCAGTGACCTGAAAACTAAGGGGAAAGACTTTGTTGAGCCACAGCTTGGAAATATCGAAA AGCAATTTATTCCCTTGAAAATATGGGCTGAGAATATGTCAAGAAAATGGCATTTGGAAAGGGACGATGTTAAGCAGAAG ACAGTAGTAAAGGAGCTATCTAAAATTTGGGGTCCTAAAACATCAGATTGA
Protein sequence (LotjaGi1g1v0062800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFLAGRLAGKEAAYFFQESKQAVGKLSQKNPHPNPTTTAATTVATTVADAEAAADVLPEVLRHSLPSKVLRNDTATSSS FLASKWVLPSDPKIQSSLSPDAINPLRSYLSLPQVTFGPKRWELPQATGTVSASTANDLRQDRYSVQANPEKLKAAAEGL AHVGKAFAAATAIIFGSAALVFGLAASKLELHNISDLKTKGKDFVEPQLGNIEKQFIPLKIWAENMSRKWHLERDDVKQK TVVKELSKIWGPKTSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 255 | 255 | 1.2E-112 | – | |
| PANTHER | 1 | 255 | 255 | 1.2E-112 | – | |
| Phobius | 1 | 165 | 165 | - | – | |
| Phobius | 166 | 186 | 21 | - | – | |
| Phobius | 187 | 256 | 70 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0062800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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