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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0066700 |
| Transcript ID | LotjaGi1g1v0066700.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT2G05790.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13; TrEMBL-Plants: tr|A0A0R0GI68|A0A0R0GI68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0066700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:9182543..9184177) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAGCACCACTTCACTCTCTTCACCATCTTGTTCCTCTGCCTCACTCTCCTCACATTCACAGGCAATGCTCTCACCTC TCTTCTACTTCTTACATTTTTCTCACAATGTAGTGTATGTTTGGTTTTCAGTACGTTTGTTTGAAGCATTGGAATTCGAG ATCACGATTTCCAACCAACTGAAAACCAAACATGCTCGTAGACACTTCAACTAACTTGCTTTGGTTTGTTTTACTCTGTT TCAGATGGTGGCTCCATCGGAGTGAACTACGGCCGCATCGCCAACAACCTCCCATCAGCAACCAAGGTAGTCAACCTCCT CAAATCCCAAGGTCTCAACCGGGTCAAAGTCTACGACACCGACCCGGCTGTCCTCCGGGCCTTATCCGGCTCCGGGATCA AAGTCACCGTCGATCTCCCCAACCAGCAACTCTTCGCAGCAGCAAGAGCTCCCTCGTTTGCACTCCAATGGGTCGAACGC AACGTCGCCGCTTACCACCCCCACACCCAAATCGAAGCCATCGCCGTCGGCAACGAAGTCTTCGTCGACCCACGCAACAC CACAAAGTTCCTCGTCCCCGCCATGAGAAACATCCACCAAGCTCTTGTCAAACACAACCTCCACCATGACATCAAGGTTT CCTCCCCCATTGCGCTCTCCGCTCTCGGAAACTCCTACCCCTCCTCATCCGGGTCGTTCCGACCCGAACTGGTACAGTCC GTTTTCAAGCCCATGCTCGAGTTCCTCCGTGAAACTGGGTCCTATCTCATGGTAAACGTCTACCCCTTCTTCGCGTACGA GTCCAACGCCGATGTCATCCCTCTCGACTACGCTCTTTTCCGGCAGAATCCGGGTGTTGCAGATCCGGGTAACGGGTTGC GGTACTTCAACCTCTTCGACGCGCAAATCGACGCCGTCTTCGCCGCGCTCTCCGCCTTGAAATTCAACGACGTCAACATC GTGGTTTCGGAGACAGGCTGGCCTTCAAAGGGAGACGAAAACGAGCTCGGCGCGAGCGCGGAGAACGCCGCCGCGTACAA CGGCGGGCTCGTCCGGAAGATTTTGACGAACAGTGGGACCCCCATGAGGCCCAAAGCGGATCTCACCGTCTATCTATTCG CACTCTTCAATGAAAATCAAAAGCCCGGGCCCACCTCAGAGAGAAACTTTGGGCTTTTTTACCCTGACCAGAAGAAAGTT TATGATATCCCATTAACCGTGGAGGGGTTAAAAAGTTACCACGACAAACCCTCGCCGGTGGGTGGCGGTGAAAAACAGCC GGTGCCGTCGCCGGCGCCGGTTTCCGGTGGGGTTTCTAAGAGTACTACTGGGAATAATTGGTGTGTGGCGAATCCTGATG CGGAGAAGGTTAAGCTGCAGGCGGCTCTAGATTTTGCTTGTGGTGAGGGTGGGGCTGATTGCCGTCCGATTCAGCCCGGT GCCACGTGTTACGATCCTAACTCGTTGGTGGCACACGCTTCGTTTGCGTTCAACAGTTATTATCAGAAGAAGGCACGTGC TGGTGGTAGCTGCTATTTCGGGGGCACGTCCTACGTGGTCACGCAGGAGCCTAGTGAGTATTCTATAAAAACCCTTTCTT TCATTAGATTCTCTGATACTGCGTATTTTAGATAA
CDS sequence (LotjaGi1g1v0066700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAACATCCACCAAGCTCTTGTCAAACACAACCTCCACCATGACATCAAGGTTTCCTCCCCCATTGCGCTCTCCGC TCTCGGAAACTCCTACCCCTCCTCATCCGGGTCGTTCCGACCCGAACTGGTACAGTCCGTTTTCAAGCCCATGCTCGAGT TCCTCCGTGAAACTGGGTCCTATCTCATGGTAAACGTCTACCCCTTCTTCGCGTACGAGTCCAACGCCGATGTCATCCCT CTCGACTACGCTCTTTTCCGGCAGAATCCGGGTGTTGCAGATCCGGGTAACGGGTTGCGGTACTTCAACCTCTTCGACGC GCAAATCGACGCCGTCTTCGCCGCGCTCTCCGCCTTGAAATTCAACGACGTCAACATCGTGGTTTCGGAGACAGGCTGGC CTTCAAAGGGAGACGAAAACGAGCTCGGCGCGAGCGCGGAGAACGCCGCCGCGTACAACGGCGGGCTCGTCCGGAAGATT TTGACGAACAGTGGGACCCCCATGAGGCCCAAAGCGGATCTCACCGTCTATCTATTCGCACTCTTCAATGAAAATCAAAA GCCCGGGCCCACCTCAGAGAGAAACTTTGGGCTTTTTTACCCTGACCAGAAGAAAGTTTATGATATCCCATTAACCGTGG AGGGGTTAAAAAGTTACCACGACAAACCCTCGCCGGTGGGTGGCGGTGAAAAACAGCCGGTGCCGTCGCCGGCGCCGGTT TCCGGTGGGGTTTCTAAGAGTACTACTGGGAATAATTGGTGTGTGGCGAATCCTGATGCGGAGAAGGTTAAGCTGCAGGC GGCTCTAGATTTTGCTTGTGGTGAGGGTGGGGCTGATTGCCGTCCGATTCAGCCCGGTGCCACGTGTTACGATCCTAACT CGTTGGTGGCACACGCTTCGTTTGCGTTCAACAGTTATTATCAGAAGAAGGCACGTGCTGGTGGTAGCTGCTATTTCGGG GGCACGTCCTACGTGGTCACGCAGGAGCCTAGTGAGTATTCTATAAAAACCCTTTCTTTCATTAGATTCTCTGATACTGC GTATTTTAGATAA
Protein sequence (LotjaGi1g1v0066700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNIHQALVKHNLHHDIKVSSPIALSALGNSYPSSSGSFRPELVQSVFKPMLEFLRETGSYLMVNVYPFFAYESNADVIP LDYALFRQNPGVADPGNGLRYFNLFDAQIDAVFAALSALKFNDVNIVVSETGWPSKGDENELGASAENAAAYNGGLVRKI LTNSGTPMRPKADLTVYLFALFNENQKPGPTSERNFGLFYPDQKKVYDIPLTVEGLKSYHDKPSPVGGGEKQPVPSPAPV SGGVSKSTTGNNWCVANPDAEKVKLQAALDFACGEGGADCRPIQPGATCYDPNSLVAHASFAFNSYYQKKARAGGSCYFG GTSYVVTQEPSEYSIKTLSFIRFSDTAYFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 330 | 330 | 3.7E-167 | – | |
| PANTHER | 1 | 330 | 330 | 3.7E-167 | – | |
| Gene3D | 1 | 211 | 211 | 1.0E-84 | – | |
| Pfam | 1 | 209 | 209 | 7.6E-60 | ||
| SUPERFAMILY | 1 | 209 | 209 | 1.15E-58 | ||
| ProSitePatterns | 124 | 137 | 14 | - | ||
| MobiDBLite | 219 | 246 | 28 | - | – | |
| SMART | 252 | 335 | 84 | 5.6E-43 | ||
| Pfam | 253 | 323 | 71 | 3.3E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0066700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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