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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0066800 |
| Transcript ID | LotjaGi1g1v0066800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CDO504; TAIR: AT2G04900.1 hypothetical protein; Swiss-Prot: sp|A4K526|TM256_BUFGR Transmembrane protein 256 homolog; TrEMBL-Plants: tr|C6T315|C6T315_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0066800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:9190315..9193918) extracted from Lotus japonicus Gifu genome v1.2.
TTAAAATCTTTCATGAGAAATTAAATAATTTTTTCCTCTAGTGTAGGGGCATTAATGCTTATAAAAATATCTTTCAAAAA ATGCTTATTAAATAATTAAATACTTTATTTATACAATAAAAAAAATCTTTTTCCAATAAAGAAAATTTCTTCCAAACGAT CTGAAGAACAAGAAGGAAGAAGCTTGAAGTAGCTGGTGGTAAAGTAAAATGGATCCTCATCTCTGGCACAAAGTGGCTGC GATTTCAGGTACCCTTTGTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTCTTTCCTCTTACCCTTTTGTTGAA ACAGGAGTTGCAGCACTTGGATTGGGCACCTATGGCGCCCACGGCTTCAAGCCGCAAAACCCATCTTACAAAGAGGTCTG TTTGATCGTTTTCATTTTTCCCATTTGCTTTTAACTTCAATTTCATCATAAAGTTTCAATTTTTACTCCCCCCATGTTGT GTTTTCTAATTGGAAATTTGGAATGTATCTATCTGTGAAGGTTTGGCATACAGCATCTCTTTATCATTTGGTTCACACAG CTGCCTTACTTGCTGCTCCAATCACAAAACACCCCAATGCTGTAAGTTCCCATTCTCACTTTTCTCTACTTGCTCTTATA TATTGGTCATGTTTGGGAAAACAGCTTAATTAAGCGCTTAACGTCATAAGCGCTTATTCATAAGCTATTTTAAAAAATAA TTGAAATAAATTAAAAATAGGCTATATATAAGTATAAACTCTTTTTCATAAGCTATCCTGAGTAGCTTATGAAAATAAGC TACCATAAGCTGTTTGCATAAGCTCTCCCAAACACTGGCATAAGCGCTTATGCTATCAGATAAGCTTAAATAAGCTCTTC CAAACTGGGCCATTAACTATATATGGTTATTGTGAAGTGTTTGTGAAATGAAAACATCAATTTTGTTTTTTTCAATTATC ATGCAGTTTGGAGGCCTTCTAACAGCTGGGATCGTGGCTTTCTCTGGGACGTAAGTGATATTAACACGATTTAAATGGCT ATATAATCTGTACCATGGGTTTCTTCTAGTTGTTTGTGAATTGTGATGCTTAGTTTGAAGCTAGATATTTTGTTTTTCAA GTTGCTTTGTATATTATATGAATGAATTCTTATGAAGAAAACAAAGTTGGAGACATGTACATTTCAATTCCATAAAGATA TTGTTCAAGTGAAAGAAGGTGAAATGCAATTGCTCATGAGTGACATTGTGGAAGTATACATTAAGCCACCAAGGTTTATA AACTTAGCCATTGCCACATGGATGTTGAAAAGTTCATTTGATTAACATGACGGCACAAATAAAAGCTAGGTTTTGGGTAT GTAGAAGATATTTTGTCTGAAGTATTAGTCATGGACTGGTGGTTCAAGGTAGTCCTCCCTAGGAAGAAATTAAGCTTGTG CGGTTTATGTTTAAGATTCCGAGTGGTATTTTCCACGGAAAAGTGGTTGAGTTGGACATTGTTTTCACCATGGGAAGGAA ACTGCCACTTAATTTTCTCCAAGTAACTGAAGGAAGGGAAATCTAAAAGACAGGAATTATTTGTGTTAAGGATGGAATGG AACCTGATACAATTGCTCTTAGTACTGAATTAGGTTCCTGGTTTGATTCTTTATAAGAATGACATCAGAGTCTGGACTCA GGATATCAAGCAAGGGATTTTTGAACCAGTTCTTTAGAGGACTATCAGGACACGTTATTTTCACAGAGGAATGCTCATGT CATATGGTTTAACAGTGATGTGAGATATGACTTTGTAGATATGATTACAAGGATTTACATACCTGTAGCAGTACCTCGAA GAAGTTGGGTTGTCTATTTAGCTAGAACGGCGATGTGAGTGTGGTTTAATATTCTTCAGGCAAAAAGGGGAAAAAAAGGT TTTGACTGTCCAGCCTGAAAAGTTCAGCTGTTTGGCATCAGGTCCAAGAGATTCCCCATGCTCATTATTTCACTGTTTGT GATCAGTGATTCCAAGTCAACCCAAGAAATACACAGATCAATGTGAGAAAGATCTGTGGATTCATTATGAAGTTTGGAAA GTATTAGCAATTTAGCCTCTAATCTGACTTTCAATATCTTCTTTGGAGGTAATCCAATTGCATGTAACATTTTGGAGATC TAAAATCGAATTATTTATCCTTCTTAGACCTTAGTGCTACAAAGGAGTGCATAATTTTAGAATTTATTTCCCATTGTTTG AAGCAGTTAATTTTCATGAATTGTTTCCAATACTTGTGGTCTTACGTGATTGCTTGATGGTAAGCAGATATTGGATGCCT TTAAAGTTGGCCATTTGTTGAGAATAAGATACATTATACTTTCATTTCTTTTGGGAAACTAAAATCATAATAACATTTTG GCAAATTTTCAAGTGTCTTGAGTCAGATGATTTAGAATTAACTCCAATCATGGTCTGCTGTAGTTTGCTGTTCTTGCATA TACAAAATGCCCTTTGTCCAATAAATAAGTCTAGCCTATAACAATATAGTGGAGCTGTGTTATTTGCTTTTTGCTAAGAA ATATTGGTAAAAAATTAGAATGAATGAAAACTGCATTCATCTTTGATGATATTCATAGAAATGTTGATTTTTTAGGTGTT ATACTGTGGCATTTCTTGAGGACAGAAAATATTCAACCTTGGCTCCATTTGGTGGCTTTGCATTTATAGCAGCTTGGGGT AGCTTGTTTTTCTGATGACTTCAACACCGTCTTGGTTTGTGCTGCTACAATATCTATCATATGTTTGTTAATAAGCAATT AGACTATCATGGGATTTAGCATTTGCCTAGCTCGGGTATCTCATTTGTAAATCTTTTTCTGTTTCAAGCCAATGATTTAT GATCTCGGAATCCATGTATCTTTGGAATTAGAGATTTGGTAATAGTACTTGTAGGTCATCATTATATACTTACATCTTAT TATTATTATTATTATATATATATATATATAGCACAGCACAGCACGCATCAGATAGGCAAAGAGGATGAGAAGGTGGAAAG TTGGATTGTGAAGTTTATCTGTTGTCTTTTTATGGCTCTGATAGCGAGTACTGGGTTTCCTTCTTTTAACTATGTTTTCT TTTGGAAATTATAGGCTTTACATGTTTGATTAAATTGATGAACTAATTTGGGAAGTAAGGAAAACGTTTTGCATAAAATA TGTTAGAAAAACATGATGTAAAAACCCTTGAGATAAATAAAAGCCACTCAACCCCAACTTAACAAAGAGCCAATTGACTT ATGAGCGAAGAAGATATTATATTATTTTTAACCAGCACTCCCTTTCTACCACGAAACGGCTCTGCCGAACTTATAGTGTG GCGGCAAAAAAGGAAGCCTACAACAAGGCTTCAGCGGGCAAAAGGGGTCATTTCAGCAACTCTGAGAACAAGACGATGAG GGGAACTTCTGTAGATTCCAAACACTCAGCAGCAAAAGCTGTGAGGGACGAAGGAAGTAGCAGGTGAGAGGTGCCTAGAT GCGAGCCAGAGGGATCTGTGACCGTGAGCGAAAGCCAACGGGTGGAGACCATGTATGAATTTATGGTTGGAGCTATAGTT GGTG
CDS sequence (LotjaGi1g1v0066800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCTCATCTCTGGCACAAAGTGGCTGCGATTTCAGGAGTTGCAGCACTTGGATTGGGCACCTATGGCGCCCACGG CTTCAAGCCGCAAAACCCATCTTACAAAGAGGTTTGGCATACAGCATCTCTTTATCATTTGGTTCACACAGCTGCCTTAC TTGCTGCTCCAATCACAAAACACCCCAATGCTTTTGGAGGCCTTCTAACAGCTGGGATCGTGGCTTTCTCTGGGACGTGT TATACTGTGGCATTTCTTGAGGACAGAAAATATTCAACCTTGGCTCCATTTGGTGGCTTTGCATTTATAGCAGCTTGGGG TAGCTTGTTTTTCTGA
Protein sequence (LotjaGi1g1v0066800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPHLWHKVAAISGVAALGLGTYGAHGFKPQNPSYKEVWHTASLYHLVHTAALLAAPITKHPNAFGGLLTAGIVAFSGTC YTVAFLEDRKYSTLAPFGGFAFIAAWGSLFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 111 | 111 | 4.6E-61 | ||
| PANTHER | 1 | 111 | 111 | 4.6E-61 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Pfam | 20 | 99 | 80 | 5.8E-21 | ||
| Phobius | 27 | 37 | 11 | - | – | |
| Phobius | 38 | 58 | 21 | - | – | |
| Phobius | 59 | 63 | 5 | - | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 64 | 86 | 23 | - | – | |
| Phobius | 87 | 92 | 6 | - | – | |
| TMHMM | 93 | 110 | 18 | - | – | |
| Phobius | 93 | 110 | 18 | - | – | |
| Phobius | 111 | 111 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0066800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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