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LotjaGi1g1v0067900.1

Overview

Field Value
Gene ID LotjaGi1g1v0067900
Transcript ID LotjaGi1g1v0067900.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor, putative; TAIR: AT1G50640.1 ethylene responsive element binding factor 3; Swiss-Prot: sp|Q9SXS8|ERF3_TOBAC Ethylene-responsive transcription factor 3; TrEMBL-Plants: tr|V7BB43|V7BB43_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0067900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:9400759..9404275) extracted from Lotus japonicus Gifu genome v1.2.

CCATTTCCTCATCCAACGACAAAGGTCATTCTCGTCATTCACCAAAACTATAATCCATTGGAGTAAATCATGCAAGACCA ACACCACATGGGTCCCCCTCAAAAAAATAACTCTCATTTCTGAGAGAATAGAAAAGAAAAGAAAAGAAAACGAGAGAAAA AGAGAGAGAAAATTTTGTGTGTCTCACAGAGAGAGAGAGAGAGAGAGAGAGAGAATGGAGAAGAATCGATATTAAGAATC GACGTTGATGGTGGTGGTGGCTAGATTTTGAGGGTTGTTTTTTTTTTCTCAATTTTTCACCCCAAAAAAAAAAAATCAAA ACTCAACCAATTTTTTTTGTTCCGTCGAATCTCACCGGTAACCACCACCATGCGTCGAGGAAGAGTCGCAGATCCAACGC CGGAGACCAAGGAGACGCGCTTTCGCGGCGTCAGAAAGCGTCCCTGGGGCCGATTCGCGGCGGAGATTCGAGATCCATGG AAGAAGGCTCGCGTCTGGCTTGGTACCTTCGATTCCGCCGAAGACGCCGCCAGAGCCTACGACGCCGCCGCCAGATCGTT CAGAGGACCCAAGGCCAAGACGAATTTCCCCACCCCTGACGAAATCATCGCCGGCGGCGGCGATGAAATCTCCCAGATCC CAATCTCACACCACCATGGCTTCTCGAAATTCGACCCGGTGAGGCCAACCACCAGCGGCATGAGCAGCACCGTTGAGTCC TTCAGCGGACCTAGGGTTCCGTCCTCCTCCGCCGCCGCTAGGGTTCCTCGCCGGCCTGTTAACCCGGTCCCAATCGAGGA CTGTCACAGCGATTGCGACTCCTCTTCCTCCGTTGTCGACGATCAGGATTGCGTTCTCACCTCCTCCTTCCGGCAGCCAC TCCCGTTCGATCTCAACCATCCTCCTCCGCCGTCCCCTTCCGCCGCTGCCGCCGACGACGACGATGACCTCCGAGCAACC GCCTTGTGCCTCTGATGGATCTGCTCCGCCCCAATTTGCCCCAATTTCTGGTATGATGATGCTTTCTCGGGAAAATTGTT TTCTGGGGCTCGCTGGATTGAAGAGAATAATAATTTTTTTTCTCCTCTCTCTTTGAAATTTTCCAACTTTACTTAAAAAA ATGAGTTTATTTAAAAAAAATCTCACCTTTGTTAGATTATTATGATTATGATTATGATGATGTAGAGAAAATAGGCATAG CCATCTTCTGTGTAATGTGATAAATGATGGAGGGTTAGTTTCTCCTTCAGCTTGATGGTTATGTCTTGGTGTTGTTGTTG TTGTAAGATTGTAAGTTATTTGGGTCTTGTTATCTTCATAGCATTGGACCTGTGATGATCTGAGAGTTCTGCTGTTGTTG TATCTCTGGATCTGTTTCTTATCACTTAGAACTTACTCTTTTTTTTTTGATTTTTCTGTACAAATGTTATGGCAATCAGA TGATAGAATAAACTACTTTCTGCTTAGTTTGTTGTTGTTGATCTTGTTATTGTTTGGCGTGCTGCATTGTGTTTTGGCAT TATTGAGATTTGAGCATGGTTGAGTTTGATGTGGGATGAGTGGGAGGGTTTAATTGAAGTGAAATTCTATGATCCTGGTT TCTTCTCTTTGCTTACTAAGTTGATAATCTTAATTTTGTGATCAGAAAAGAAAAGGAAAACCTTTAGAATCTGAGGTTTT TGTAGCTAATATTTGATATATCAAGTTTGAACTTTGAAGCATGATTGATTCATTGAAGGGCATCCCTGAAACTTAAAATT TAGTTGTTCACACATGTTAGAAGGGAATGAGGAAAAGAATCGAAGAAGAAGATTTATTGGACTGATCTTTAGATCACTTT CATTTGCCTGGCTTGGCTTTCATGCATTAGTTTTGGCTAGATGTTAAGTCTCAGCCTTTCCATTCTCTTAACTATTTTGA ACTAAGATATTTTTATTTAAAGAATTTGTTGGACAAAGTTATCTTCGTCATGTGTTTAGATTTCTATTGAACTCAATGCG GATTCATGTTGCATCTAGCATGTTCAAATTTTATTTCTTCGATCCATGTTGAACTCAGCCTGCAACTGAGATACATGAAG TCTCATTTCTGTTGTACTAATACAAAAACATACGTGTATGTTTCCACGTTTGAGTCAATGTGACAAAATTTTGCTTCTCC GATTTGTGTACATGTTATGTAATCAATTATATCTGTATAGGTTCAGGAAGCTGTGTCATATATTATTATGCTTTTAAATT TGTAGTTAAGTCTGTAAAAATAACTCGTGTCATCAAGTTTCAGGCTTTGAGGCCATAAAATTCCATGACATAAGTTTGGG TATTAAACCTTCACCGCATGGTATTCCAATTTGCGCTTGAATTTGATACCAACCTTACAAGGTATTTAATAAGACAAGAT AACGCATTTGCTAAAGCTTCCGAGTCCTGACTCGATTAAAGCATGTCTTGTTGTTGAGACTTGACACCATAAAATTCTAT GTCGTGTTTTGAGTATCAAACCTCCGTGTGGTACTCTAATTTACCCTTCATAGTGCACAAACTATTCATAAGACAAATAA AATGCTTGTTATTTGTGGGGAACTCTCATCTTTTGATGTGAAGCAAGCTCCTTGGTAATGAGTGATTGATAAGGAGAAAA CAGATTCTTTGCTGTTGCTGCCTTTGTAATTGAGTAATGGTTGGATTTCTATTAAACTTAAAGCCGCCGATTCATATTTG AGTCAACGTGGTAATTTTAGCTTCTCTATTGATTTGTTGGGGGGAAATCAAAGGGTCAAGAGTGTAAATTAATAGCACAA AGTTCTGCTTCTGCTGCGAGTCTTCTTAGAGTTAGTAGTTCTCACCTAAATTGTATGTTGGGATCTTGTAAAAAGCCTTT ATGGTACTTAGTTTTTTTTTGAGAGAAGGTAGTGTCTTGCGAATATTTGCTTTCTTCCAATTATGAGTAAACAATATCTT GATGCTATTCAAGTTTTTTTTCAGGAAAAAGATACTCAAAACGTGAGATTTTTCTCTGTATTATTATCCTTTTCTTTTAT TATAATCAAAGGAATCCTACTTTGTAGTAATTGTAAAGATGAATATCCTTTTACAACAACCTCATCCATAATATATTTTT AACAAATACATGGAACTTACAAAAAACAATGAAGATGGAACGAAAGTGGCCCTAGTGATCAAACGTATCAACGAAACCAC GAGAGAAAAAGAAACTTATCATACAAGTTCTTAGGAGAGAAGCATATTTCCATGATTAGTACTATTAACTTCTAAACGCA ACTGGTTTTACTTTATTTTTCACATAGAAGTTTAGTAAGACTGAACTGTTGGCTGTGTTTGATTTTCAGTTTAGAAGTCT GTTTGGAATATTGAAATTCGAGATCACATATTCTAATGTCTCAAACGTAAACGAGTCTTTGGACCTCCGTTGGGTGAAAG TACTTTCAAACTGAAAACCAAACAAACACTAAGTATTCCAACAGCAAGAAATTACATGTAAAAGAAATAAAAAGAAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0067900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCGTCGAGGAAGAGTCGCAGATCCAACGCCGGAGACCAAGGAGACGCGCTTTCGCGGCGTCAGAAAGCGTCCCTGGGG CCGATTCGCGGCGGAGATTCGAGATCCATGGAAGAAGGCTCGCGTCTGGCTTGGTACCTTCGATTCCGCCGAAGACGCCG CCAGAGCCTACGACGCCGCCGCCAGATCGTTCAGAGGACCCAAGGCCAAGACGAATTTCCCCACCCCTGACGAAATCATC GCCGGCGGCGGCGATGAAATCTCCCAGATCCCAATCTCACACCACCATGGCTTCTCGAAATTCGACCCGGTGAGGCCAAC CACCAGCGGCATGAGCAGCACCGTTGAGTCCTTCAGCGGACCTAGGGTTCCGTCCTCCTCCGCCGCCGCTAGGGTTCCTC GCCGGCCTGTTAACCCGGTCCCAATCGAGGACTGTCACAGCGATTGCGACTCCTCTTCCTCCGTTGTCGACGATCAGGAT TGCGTTCTCACCTCCTCCTTCCGGCAGCCACTCCCGTTCGATCTCAACCATCCTCCTCCGCCGTCCCCTTCCGCCGCTGC CGCCGACGACGACGATGACCTCCGAGCAACCGCCTTGTGCCTCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0067900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRRGRVADPTPETKETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPTPDEII AGGGDEISQIPISHHHGFSKFDPVRPTTSGMSSTVESFSGPRVPSSSAAARVPRRPVNPVPIEDCHSDCDSSSSVVDDQD CVLTSSFRQPLPFDLNHPPPPSPSAAAADDDDDLRATALCL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31677:SF70
12 201 190 1.4E-77 –
PANTHER
PTHR31677
12 201 190 1.4E-77 –
Gene3D
G3DSA:3.30.730.10
16 75 60 5.6E-30
IPR036955
CDD
cd00018
16 74 59 3.26333E-18
IPR001471
SUPERFAMILY
SSF54171
17 75 59 7.85E-22
IPR016177
ProSiteProfiles
PS51032
17 74 58 23.525
IPR001471
Pfam
PF00847
17 66 50 3.4E-12
IPR001471
SMART
SM00380
17 80 64 4.5E-35
IPR001471
PRINTS
PR00367
18 29 12 3.5E-10
IPR001471
PRINTS
PR00367
40 56 17 3.5E-10
IPR001471
MobiDBLite
mobidb-lite
106 156 51 - –
MobiDBLite
mobidb-lite
106 124 19 - –
MobiDBLite
mobidb-lite
169 192 24 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0067900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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