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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0070600 |
| Transcript ID | LotjaGi1g1v0070600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oxidoreductase/transition metal ion-binding protein; TAIR: AT5G19875.1 transmembrane protein; Swiss-Prot: sp|O49850|GCSP_FLAAN Glycine dehydrogenase (decarboxylating), mitochondrial; TrEMBL-Plants: tr|G7KH57|G7KH57_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi1g1v0070600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10015062..10015956) extracted from Lotus japonicus Gifu genome v1.2.
AAACCTTTTTACCCAACAATTCCCTTCAAATCAAATTAAGCCACCAGAAAGTTCCAAACTAAAGAACATCTGGGACAGCA TCTTCTGCATAACCAAGTCTCATCCTCAGTCACTTCTCGCAAGTTTCTTTCAAATGGCCAGATACAATGATCACTATTAC TTCTGGGAATACTTCACTTTCCCGATCCACCTCTTGTTCTTCATGTTCATCCTCTTCTTCGTGTTAGCATTTTCCTGGTA CATCAACTACGAGTCCGTGTATGAAGACCTTCTCATACAGGTGAAGGTTTTGCTCGCCCTTGTTCCGCTGCTGCTGTTGC TGGTCGTTCACTGCCTCTCGAGTGGAGGATCGTTCCCGATACCGTTGCCGGAGGAGAGGGAATCACTGCACCGAGCCGGA GGGTCGCCGTGGGGAGTGGCGCTCTTGCTTGTCTTCCTACTTCTCATGATGGCTTACCAGTCCTCTTTCCATGCACGGTG GTTCCCCTTGGCTACCAAATGATGACGATTTCTCAAGTACTCAAGGAGCTATGCAGGCTAGTCTAGTGAGTTTGAACTTA TGTGTAATATTTGTGAAAGGTTACTTACTTAGTGCATGTTTGGAAAAAAAATTACAATTAATTCTAAAACTATAATCAAT TCTGCGAAGAAGCTTGTGAGAATAAATAGCTCCAGAGTTTTAGAATTAATTTTAAAGAAATAGCTAATTCAAACATGTTG TTAGTTCTGTTTTAATTTGCTTTTCCTTTTAATGGCTTGTGATATATAACCATTATGTTAGTTTCACACTAAATGGTGTA ATGCTTAGCTATGGGTTTGTTACAAATTGAGATTCATCCCTTCATTCCCTTGGCTTATCATGTACAGTTATACTAATTAA TTAGAGCAAAGTCTT
CDS sequence (LotjaGi1g1v0070600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAGATACAATGATCACTATTACTTCTGGGAATACTTCACTTTCCCGATCCACCTCTTGTTCTTCATGTTCATCCT CTTCTTCGTGTTAGCATTTTCCTGGTACATCAACTACGAGTCCGTGTATGAAGACCTTCTCATACAGGTGAAGGTTTTGC TCGCCCTTGTTCCGCTGCTGCTGTTGCTGGTCGTTCACTGCCTCTCGAGTGGAGGATCGTTCCCGATACCGTTGCCGGAG GAGAGGGAATCACTGCACCGAGCCGGAGGGTCGCCGTGGGGAGTGGCGCTCTTGCTTGTCTTCCTACTTCTCATGATGGC TTACCAGTCCTCTTTCCATGCACGGTGGTTCCCCTTGGCTACCAAATGA
Protein sequence (LotjaGi1g1v0070600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARYNDHYYFWEYFTFPIHLLFFMFILFFVLAFSWYINYESVYEDLLIQVKVLLALVPLLLLLVVHCLSSGGSFPIPLPE ERESLHRAGGSPWGVALLLVFLLLMMAYQSSFHARWFPLATK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 121 | 121 | 4.4E-50 | – | |
| PANTHER | 1 | 121 | 121 | 4.4E-50 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 20 | 38 | 19 | - | – | |
| Phobius | 39 | 49 | 11 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 50 | 71 | 22 | - | – | |
| Phobius | 72 | 90 | 19 | - | – | |
| Phobius | 91 | 108 | 18 | - | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 109 | 122 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0070600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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