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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0070900 |
| Transcript ID | LotjaGi1g1v0070900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group family; TAIR: AT5G05330.1 HMG-box (high mobility group) DNA-binding family protein; Swiss-Prot: sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7; TrEMBL-Plants: tr|I3T9L0|I3T9L0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0070900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10072751..10078178) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGTAATTTTGTATCTTGAAAAAATTGGAATGAAAAGGAAAAAGAAAAGAAAAACTGAAGCAATGGATAGGAGGTAAA AAAAATTTAGGCAGAGGCGCCAACTTGTGAACAGAATCATACATAAGAATGAAACATCCTCAGTAGTTGTTTTTCTCATC ATCATCATCATCATTCAGCAAATGCTAACTATGATCATCAACTTCACAAGTTTGAAGCCTTTCAAAACGACAACAACCTA GTACACTCAACGCTGCATGCAATGGTTTCCGCACCCCGATTGAGAAAAAGGGTCTTTCCCCTTCTTCGTGCCCCAGATGG AAGTGCTTTTCAAATATGGTAATTCATATACGCAAATCAATGCTTTTTGTTTTTTACTTAATATTTTCTTTTTCCTTTAG TCTAGTTTTCCTTATATGATGTTATCAACTTTGGATGTTAGTGTTCATGCCTTCAACATTTCTGGGCTTGAGCGTTTTGT AAATACTATATATTTGATTGTTTGTGCCCAGTGAATTATGTGAGGTTTCTGTGGCTGTTGCTTTGGCTGATTTGCACCAC TGTGAAACCAAGATGGCATCCAAGATTTTCAAGGGAAAGGAATTGATGCAGCATTCCCCTGTCAAGGTGGAACCCAAGAC CGAGGTAAAGCAGGAGATGCAGGATGATGACCCTGAGGAGTATGTCCCTAGCAGATATGATCTGATTAGGAACCAGCCCG TTTCGGCTTACCGTCTCTTTATGTAACACCCTCTCATTTTCTACCTGAATTTTAGTTTTTGATGTTGAATTTTGCCACCC CATTTTGTTTGGTTGGAATAGTCCTGATAAAAATTCAATCTTTTGCTGTGTCTTGTGCAGCAGATATGTGCATGTCTCTG CAATTTTTGTTTTTCAATCCTGTTGCTCATCTGTTATTTACCAGTGTAGCATGTTTGGATTCAAGTTCAGATCTTCCAGT ATCGATGTCTGGATACACAGAAATTATTCGCGGTAGAAGAAGATTTGATTATCGGAGAAGCTAGTCCTAGTAGCTTCCGT GGGAGATCTTCCAGAATCAATGTTTGGTTACATGGTAAAAGAAGAATTGATTCTTGGAGAAACTACTCCTAGTAGCTTCT GTGGGAGATCTTCCCAAATCAATGTTTGGTTACACGGTAGATTTTCTCGGTAGAAGTAGAATTGATTCTCGGAGAAGCTA CTTATAATAGCTTATGTGGGAGGAGAATTGATTCTGGAAGATCTAAACATGAATCCAAATGTGCTACACTTGTGAATAAC ATTGTTTATGAATGTGTGTTCTGATTTCTGTTCAAACTTGTTCTCAATTGTGATTATGCTCTATATAGCCATGTTTTCCT TTTAAAGTTGTGATCTTTCAGATGTGATATCGTTTCTTCTCTGGGTTCGTAATTGAATGATTTCACGTTTGTTTTATGGT AAATGCCATGTTTTATTGATTGGCTTTCTTTCTCAGGGAACAATTTATGAAGGATCATGACAATAAAAATTATATTGAAG CTGATAGGATGGGGTTTGAAAAGTGGAAGAGCATGTCCAAGCAGGTAAAAAGATAACCCCATTTTTATTTCTTCACTGTG AAATTTGTCTTACTTTGAAACATGGTGTCCCTTTCTCTTCAGGTGAAGCTACCATATACTTTTCATGCTTTTGCATTGAA GAATGAATATGTAGATGATTTGCTCCTGGAAGCTCATCAGATTGCAGAGGTAACTGGACAATGGCATGTTGATTTTTTTT TTTAAACTATTCTCTTCAAATTTTATTTCTGCTTGCTGAAGTTTAGGCCCTATAAATTTATCCATTGAAGCTTGAAAAGT GTTGTATGTGGGCTCTTGAGACACTTATCTATTTATTGTTGGGCATCTTAACACTGAAACAATTTGTTGCTTTTTCAAAA TTATTCAAATAAACGTTTTCTTAGACTTCAGCTTCTTAAATTCATGTCATTCATCTTTTGTTTACATGCTTAGCATTAGT CTTACCTGGTTTAATTTTTATGGGATGTTAAGAGCATGAAACAAAGCTTCCCATTTTTCTGATTGGCACAATTATACATT AACACCGCTTCTTGATGATAGTTGTCAATAAGTTGATTTGAATAAAAGGAACGAAAAGGAAGGAAGATGTGGAAATAGGG CAAGGTTTATGAATTGCGTTTTTTCACAACCCTCAGCCCATTGCTTTGTAGAATCAAATGAAATTGATGCTTTTCATGCT TTCGAATATGAGATTCCTACTGTATCGTTGACAAGGTGATTGATTTAGGTGAGTGATGAAGCTGATTCAGCATATGCTGT GAAGGATGAAAAGGTTTGCCTACTAAGTCTCAATGGATATTCCAATTTTTTGCAGTCTTTTTAAGTTGTTATTTTTACAC ATTGGTTTTCATTTTTGGCTTGTTTGAATGGTCTTTAGTCCCAATGGATCTATAGAGTCTTCACAGGAGAATTAATCTGC CAATTAGGTGTTGCTGATTATGAAATGATACATTTCTTTCTCCAATTCTCCTCGCTTCTGAATTGTTCATTTTTTCAATT TTGATTCATGACTTAAATGAGTTTGAACATCATTCAGTTTATTAATCATTTTTTCAATAAAAAGAATCTATGGCTATTCC ATTTCTTCTTATAATCTTCTAAATACATTTTCTTGGGATTTGACTCCTATAAGCTGAGAGAATCACTTGGGTAAAGTAAT TTATTACAACCGTTGATTGAGAAATCAAAGGTTGTGATTGTGATCTATAATAACCTATGATGTTCTTTAAATCTCAATCA TTGATTTCTCGATCAATAGTTGAAATGACTTAATGCATGTTGGAAATCCTTCTACAATTGATTCTGAAGTCTGTGGATAA GCTTCTGCAAGTAACTTTTAGAATTTATTCTGACTAAAGAGAAGGTGATCCAAACGTGCTTAATTTCTAAAGTGAATCCC TTACTTTAGAGGAACTAAATCCATTTCATTGTGCACTAAACAACTATTTCCTAGGGGCAAGTCATCATTAACTTCGAAAT TTGGATATTGCAATTATGGACATTTAAGATGATGCATAACAAACCTAGATACTGAATTCTATAAAAAGAGCGAAAAGGAA GGAAGATGTGGAAATAGGGGATGGTTTATGAATTGCCTTTTGTTCACAATATCAAATGAATTGATGCTTTTCACGCTTTC AAGTTTGAGATTCCTACTGTATCTTTAACAAGGTGATTTATTTAGGTGAATGATGAAGCTGACTCAGTAAATGCTGTGAA GGTTGAGAAGGTTTGCCTACTAAGTCTCAATGGATATTCCGATTTTTTGCAGTATTTTTAAGTTGTTACTTTTACATTAG TTTTCAATTTTGGCTTGTTTGAATGGTTTACGGTCCCAATGGATCTATATAGAGTCTTCAGGGGAGAATTAATCTGCCAA TTAGGTATTGTTGATTATGAAATGATACATATCTTTCTCCAATTCTCCTCGTGTCTGAATTCTTCTTTTTTCCAATTTCG ACTCATGACTTTAATGAGTTTGAAGTTTGAACATCATTCAGTTTATTAATCATTTTTTTTAAATAAAAATGAATCTCTGG CTATCCCATTTCTTCTTATAATCTTCTAAATACATTTCCTTGGGATTTGACTCCTCTAAACTAGAATCACTTGGGTAACG TAATTTATTACTACCGTTGATTGAGAAATCAAAGGTTGTGATTTTGATTTTATACCAGTGCATCTATAATAACCTATGAT GATCTTTAAATATCAATCATTGATTTCTCGATCAATAGTTGAAATGACTTAATGCATGTATGAAACCCTTATACAATTCA TTCTGAAGTCTGGGGATAATCTTCTGCAAGTAAATTTTAGAATTGATTCTGATTAAAGAGAAGGTGATCCAAACATGCTT ACTTTCTAAAGTGACTCCCTTACTTTAGAGGAGCTAAATCCATTTCCTTGTGCACTAAACAATCATTTCCTAGGCCGCAC CTCATCATTAACTTTGAAATTTGGATATTGCAATTATGGACATTTAAGAGGATGCATAACAAACCTTGATACTGAATTCT ATAAAAAGAGGGAAAAGGAAGGAAGATGTGGAAATAGGGGATGGTTTATGAACTGCCTTTTGTTCACAGTCCCTCGCCCC GTTGCTTCTTAGAATCAAATGAAATTGATGCTTTTCACGCTTTCAAGTTTGAGATTCCTACTGTATCTTTAACAAGGTTT TTTATTTAGGTGAATGATGAAGCTGACTCAGTAAATGCTGTGAAGATTGAGAAGGTTTGCCTACTAAGTCTCAATGGATA TTCCAATTTTTTGCAGTCTTTTTAAAGTTGCTACTTTTACACATTAGTTTTCAATTTTGGCTTGTTTGAATGGTTCAATG AATCTATATAGAGTCTTCAGAGGAGAAATAATCTGCCAATTAGGTATGGCAGATTATGCAATGATACATAAATTTCTCCC AAGTCATCATTTAACTGAGTTTGGATATCATTCAGCCTGTTAATTACTTTTTAATAAAAAATCTCTGGCTGTCCTATGTT TGCTTATAATCTTCTAAATATATTTCCTTGTGATCTGACTCCTCTAAAAGGAGAGAATAACTTAAGAGAGTAAAGGAAGT GTGTGTTTGGATACCGGTGCAACGTGAACACACTTTTATCCCAATTCATAAGAAGAGTGTTGTTCACTTTTTGTCTCAAA GTGAGTGCTAAAGTATGTTTGCACTAGTGCCAACGAGTGCTCTAAAATTAGCCTAGGTCCGTTGTTTGAGAAATCAAAGG TTGAGATGGTGATGTTATACCTGCAGATCTATTTTATCAACAATAGTGTTATATAAATCTCAATCTTTGATTTCTTAATC AATGAATACAATGACTTACTTTACTTTCTAAAGTGACTCCCCTACTTTAGAGGGACTAAATCTATTTCCTTGTGCACTAA ACAATCATTTCCTAGGCCTTTCCTTGTGCACAAAACAATCATTTCCTAGGCCTCACCTCAACATTAACTTTGATATTTGT ATATTGCAATCATGGACATTTAAGAGGATGCATATCAAACCAAGATACTGAAATCTATTGCTCCCACTTTTTGTTGAATG TTGCTTTTAATGAGACCATTAGATTTGTAATTATGGGGAGATTTAGTAGCTTGGAGTCTCTAAAAGGCAAGTTATTCGGT GTTGTACAGGAACCATAATGGTATGGAATTTGTAGTTTTGGACCACTGAAGGTCTATTTGCATCATGGAGCATGAAGAAT ACAGTTCCGGGTTCTTTTTGGTGACATGTGATGTAATACAGTTCATACTTTTGGTGGAATGTTAGTCCACATTTATATAT ATTTTGGCAGTGTAAATGCTGTATTTTATAATGGATACAAATCTTTGATGGAAATGAGTCAATTATCT
CDS sequence (LotjaGi1g1v0070900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCCGCACCCCGATTGAGAAAAAGGGTCTTTCCCCTTCTTCGTGCCCCAGATGGAAGTGCTTTTCAAATATGTGA ATTATGTGAGGTTTCTGTGGCTGTTGCTTTGGCTGATTTGCACCACTGTGAAACCAAGATGGCATCCAAGATTTTCAAGG GAAAGGAATTGATGCAGCATTCCCCTGTCAAGGTGGAACCCAAGACCGAGGTAAAGCAGGAGATGCAGGATGATGACCCT GAGGAGTATGTCCCTAGCAGATATGATCTGATTAGGAACCAGCCCGTTTCGGCTTACCGTCTCTTTATGGAACAATTTAT GAAGGATCATGACAATAAAAATTATATTGAAGCTGATAGGATGGGGTTTGAAAAGTGGAAGAGCATGTCCAAGCAGGTGA AGCTACCATATACTTTTCATGCTTTTGCATTGAAGAATGAATATGTAGATGATTTGCTCCTGGAAGCTCATCAGATTGCA GAGGTGAGTGATGAAGCTGATTCAGCATATGCTGTGAAGGATGAAAAGGTGAATGATGAAGCTGACTCAGTAAATGCTGT GAAGGTTGAGAAGGTGAATGATGAAGCTGACTCAGTAAATGCTGTGAAGATTGAGAAGGAACCATAA
Protein sequence (LotjaGi1g1v0070900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSAPRLRKRVFPLLRAPDGSAFQICELCEVSVAVALADLHHCETKMASKIFKGKELMQHSPVKVEPKTEVKQEMQDDDP EEYVPSRYDLIRNQPVSAYRLFMEQFMKDHDNKNYIEADRMGFEKWKSMSKQVKLPYTFHAFALKNEYVDDLLLEAHQIA EVSDEADSAYAVKDEKVNDEADSVNAVKVEKVNDEADSVNAVKIEKEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 60 | 60 | 2.4E-44 | – | |
| PANTHER | 1 | 60 | 60 | 2.4E-44 | – | |
| PANTHER | 90 | 184 | 95 | 2.4E-44 | – | |
| PANTHER | 90 | 184 | 95 | 2.4E-44 | – | |
| Gene3D | 92 | 153 | 62 | 9.8E-6 | ||
| SUPERFAMILY | 93 | 151 | 59 | 3.27E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0070900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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