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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0073200 |
| Transcript ID | LotjaGi1g1v0073200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PRA1 family protein; TAIR: AT2G38360.1 prenylated RAB acceptor 1.B4; Swiss-Prot: sp|O80915|PR1B4_ARATH PRA1 family protein B4; TrEMBL-Plants: tr|A0A0L9UVH1|A0A0L9UVH1_PHAAN PRA1 family protein; Found in the gene: LotjaGi1g1v0073200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10254569..10259291) extracted from Lotus japonicus Gifu genome v1.2.
CAATTAGTAAACAACAAATATAGTCACTTTTGAATCCATAATGTCTTGTAAAGGGAAAATAAAATTAAAAAACAAAATTG GTGGATGTTTTCCATATTACTTTTTTGGCAGTGAATTTTCTGTAAATAGATCCAACCATTCCATATTAGCAATGTTATAT TTTAGAGCAAATTAATTACTACCACTTACCACCACCACATGCTATCATAAACTCATAATAACGCTTCTTGCTCCCAAACC CAAAAAGCCCAATCACAGAATCTCCATTGTTTTCTCTCTCTATCGATCCACAACCACGCGCGGCGATCGGAGAATCACGC GCCACCATGTCATCCCCACCGACACTCCCCGTTTCCACCTCCCAATCCAACAACAACGCCGCACAATCCCAACCTCCGAT CGCAACCCCAGCCTTCCGCAACTTCATCACTCGCGTCTCCACCACCCTCCGCCAAGGCTTCTCCTACCGCCGCCCGTGGT CGGAGCTCGTTGACCGCTCCTCCTTGTCACGGCCTGACACCCTCGCCGAAGCGTACTCTCGGATCCGCAAGAATTTCTCA TACTTCCGTGTCAACTACCTCACCCTCATCGCCATCGCGCTCGCGGTGTCGCTCGCTACGCATCCGTTCTCGCTGCTTGT CCTCTTCGGCCTCCTCGCGTCGTGGTCGTTCTTCTACCTCTTCCGCCCTGCAGATCAACCCGTCGTCCTCTTCGGCCGCA CGTTCGCAGATCGCGAAACCCTAGGGATCCTCGCCTTGCTCACAATCTTCGTTGTTTTCCTCACCAACGTTGGATCGCTC TTGATCTCCACTCTCATGGTTGGCTTGGCCATCGTCTGTGCGCACGGCGCGTTCCGCGTCCCGGAGGATCTCTTCCTTGA TGAACAAGAGCCGATGAACACTGGATTCCTCTCGTTCCTCGGCGGTGCTGCTGCTTCCGCTGCCGCTCCAGCAGTCGCGC GCGTTTGAACGGCGGGATCTGTTGCCGGTGGAGCGTTGTGAGGTTGGTTGTTCCACCTATCTTGTTGTATTAGGCTGAAT TGAAATTTGTTACAGAGATATTCTTTGGCTTTTGTGATCTAAAGCGAATTGGTTAGGGTTTAGTTCTGTATGCAAGGAGA TTACTGTGATATCAAATTATCAATTAATGCAGTTTAGTTACCGATTTTTCGGATCTGAATTTGCTTGTGCATTTTTTAAT TTCGTTGTTCGTAATCGTAATGAAACGTTTTCATTGTTGAATCAGGATGTGATGTGAGATTCAGAGAATGAGGAAGGTTT TTCGATGTTAACGTAAATGATAGACTCCTGTGAAATCTGCTATATTTTGTTATCGATTGTCGTTATACATTGCGTACTTA TTCTAGTTTACATGATCAGCTATTCAAGTTTCTGGAAATCTTATATGGTGTTGATTGTAATATAGGTAAATTGGGGTTGG AAACATGTGTGGCTTTCAATTTAGGAAGAAATTCTGACATGTTTTGGGTTTGAATTTTGTAAGTTTACTATAGCCCCCTA GGCCCTAACATACAAGGAAATTTAAGTGGCTTTCTCTGTGTATATAGATTTTACTTTTCAGTGAAGGGGTTCGATTCTAT AATTGTTGGATGCAATTGCTGGGTGAGTTTGGTGCAGCTTGGGCTAGTTTTGTTTAGATTTTCAAAGATTTTAAACCACC CTCATCATGTCACAAGAGAATGGTATCAGGCTTTGGGGTCTTTTTAGATTCTAAGTTCAATAATCTGTAGACTTTCATTG TCCTGCTGAGTCTGGTGCAGCTTGGGCTAGTTTTGTGTAGATTTTCAATGATGTTAAGCCACCCTCATCATGTCACAAGA GAATTGTATCAGGCTGTGGGGTCTTTTTAGATTCTGAGTTCAATAATCTGTAGACTTTCATTGACTAGAATGATGTTAAG CCACCCTCATCATGTCACAAGAAAATGGTATCAGGCTGTGGGGTCTTTTTAGATTCGAAGTTCAATAATCTTTAGACTTT CATTGTCCTGCTGAGTCAGAAGTCCAGGTTAGGGATGGTCATTTTATTTATTTTGTAGGCTTAGTATAAACCAAGAAGAG TTTTTGGCATGTTTTGAGAGGTTAGAATCTTCTCATCTTGACATTTCCATTTACTGGTTCTTAATTTCTCCATCTTCATT ATACTATTTTGTTACTTTATTTTGGATCATGTGATCAGACTTTTTGTTATGAACTAGAATATAGAAACTAGAATCCTTAA GGAGCATTTTCAATCCATACTTAGTTGTATGCGTAATCAAATTTTTCCGGCAAAAGACACCATTGAACCCTTTACAGCAT TGGAGTGTGCTACTTGCAAATTTTGAATTTTAAAGCCCTGTTGTGTATTGGTGTCTTCTGTTGGAAATGGACTCTATGCA GTCAATTTTTGGTGCAGTCACTGCAGCCAAGCAACTCGGCCATTTGGATGAAAATCCAACAACTAATATATATTGATATT ATAGAACATGTTTTACATATGATTTACTAAACTCAAAAGCTGAAGAGCTTGATATGCTTGCACAAATATTGACTGGAGTC AAGTCAGATTTTGTTTTGTCCTCAAGAGTAGATATTTGCATGATAGCTAGTATCCTAAGTGGGCTTTAAATAAAAACTAG TCAGATTTTGTTGATGATTAAATTTAAACAGTACTTGTAGATGTTAATTGCTTATGCTCTCTTGTTTTCTGGTGCTGATA TCGTGCAAAGTTATCTAACTCGGGTGATAGTTTTTTTTTTGAAAACACAACATAATATTAATTAACCATAAAGAAATCCA AGAGAACACCCCTCTCAAGGTAAGGCTGATAGTTAGCATTAGAAATAGGACAAAACTTTGAAAAACTCAGTTATCCACTT CTTTAATTTCATATTAAGGCCTAATTGCGTTAGACTAAGGTCCTTCTAGGTTTTCTCTAGCTAATCAAGTTCTACTACTT TTATAATTAAGCAAATTTGGTCCATTCATATGAATAAAATCAAGAATTTTTCTTTTTTCTTTAATACTTTTAGAGTTTAT GAATGATTTGATATAAAAAAATAAAAAGTAAAAAAATAAAAAATTTGAAACTTAAATTTGAGAGATTTTGGTAATTTTTA TTTTTTTTATTGAAATTTAATATTTTGGTTAGTAGGTTTTAATGGGAATAAGCTCTATGATGATTAAATTGATTGAGTCC CTTTGTGAAGATGTTTCTTAATAAATAAGAATTTGAGAGTTTAAGTATTCATGTGAAAACAAAAGATGAGTGGTAGACAA TTCAAATGGAGAAAACAATCTTGAAAGTTGAAAGGATCTTAGAATAATAGTACCAAAAACACTTAAAGTTAAACCAAGTT CTAACCGAATGAGTAACTCAAGCAATCACAACATTTAAAAAAAAAACTGAGTAAATTGGGTGGTGATAGGTCTGGGTTAA GTGGTTGAAAGAGTGTGAATCTGATGGGTTTGTTGTGGTTTTGCGTAGCATTAGGAGCTGGTTCTTGGCTAGGAGCTTGA ACGAGCCACGACTTCAAATTACAGGTTGGTGGGTGAGTTCGTGGAGGGTGAGGGTTTGTGGGATATTAGATTGAAGGTGT GTGATTGGGCGGAGGTTTGGCTGGACAATGGATGGGATGTTGATTGCTAGCGGTGTGTGGCGGTTATAGAGTGTGATGGC TTCGAAGGGGGTGAGGGTGGCAGAAAGGACAAGGGTGGGTGGCGGTGATTCTTTCGCCACCAGCTGCATCAACCCCAAAC ACTAGATAGACAATGGCGAATTTGACTCTGTCTACTTGGGATGCCTTTGGAAGGAAGGCTTTCATCATGAAGTACCTCCA CCGACAACACCATGTGACAAAGTAGTCATTCTGCAATGAAAGCAACGTCGCCAACAACATCGCCTCATGGAACTATTCCC TCTGCAAGCATTGTATCCTCCCCACCGCCGTCTCCCGGAACCTGACAATTTCCCCTCCACTACTGCCGTCCACAACTTCA GCTTCGAGAACATTAGGGTTTGCAGGAGATGGAGAAAAATATTGTTTTTGGAGGCGGAAAATGACTTGGATCGGCAAAAC TATGAGAAGGAAAAACAGAAGTGGGTTGGCGATTGTTGTTGTTGTTGTCGTTTGGGGTGTTGGCTCCCACTTGGCATTGC TGAGAGGTAAGAAGAATAGAGTGAGGATACAAGATGAGAGACGAGAGCATTAATTTGAGTACTTCATTGTTTTAATGACA TGTTTCAAGGCTAAGGGTACCATGTTAGTTCAGTTTTTCTCATCGCCATACATAGATCAGTCTCCAAGCTGAAACAATCA CCGTAATTAGTTAATTACATCTTCGAGGTCAATCATCTTGTATCTTAATGGAAGAGACAGCACGCGCCCCTTGTTCATGG GATTACAAAATCACAAATTGATCAGCGCCAATCCAAACATTTATCACTAATCTTTACATTAATTAAACATACCAACTTCA TCAATTAAGGTTTTTGAACAATTAATAATTACAAATAATGAACCCTACACCGCTCCACTGGAAATTAAGCTTCGGAGGAT GAACGACATTGTTGTCCATTTACGAGAAACGACAAGAAAGAAGGACAGAGGGTGTCGTAATGTGGTTCATGCGAACGTGA TGTGGACCAATAGCTGCTGCTAAAATCCGTATAGCAAAGCATGAAAATGATGATGACTATAATAACTCTTTCCATATACC ACG
CDS sequence (LotjaGi1g1v0073200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCCCCACCGACACTCCCCGTTTCCACCTCCCAATCCAACAACAACGCCGCACAATCCCAACCTCCGATCGCAAC CCCAGCCTTCCGCAACTTCATCACTCGCGTCTCCACCACCCTCCGCCAAGGCTTCTCCTACCGCCGCCCGTGGTCGGAGC TCGTTGACCGCTCCTCCTTGTCACGGCCTGACACCCTCGCCGAAGCGTACTCTCGGATCCGCAAGAATTTCTCATACTTC CGTGTCAACTACCTCACCCTCATCGCCATCGCGCTCGCGGTGTCGCTCGCTACGCATCCGTTCTCGCTGCTTGTCCTCTT CGGCCTCCTCGCGTCGTGGTCGTTCTTCTACCTCTTCCGCCCTGCAGATCAACCCGTCGTCCTCTTCGGCCGCACGTTCG CAGATCGCGAAACCCTAGGGATCCTCGCCTTGCTCACAATCTTCGTTGTTTTCCTCACCAACGTTGGATCGCTCTTGATC TCCACTCTCATGGTTGGCTTGGCCATCGTCTGTGCGCACGGCGCGTTCCGCGTCCCGGAGGATCTCTTCCTTGATGAACA AGAGCCGATGAACACTGGATTCCTCTCGTTCCTCGGCGGTGCTGCTGCTTCCGCTGCCGCTCCAGCAGTCGCGCGCGTTT GA
Protein sequence (LotjaGi1g1v0073200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPPTLPVSTSQSNNNAAQSQPPIATPAFRNFITRVSTTLRQGFSYRRPWSELVDRSSLSRPDTLAEAYSRIRKNFSYF RVNYLTLIAIALAVSLATHPFSLLVLFGLLASWSFFYLFRPADQPVVLFGRTFADRETLGILALLTIFVVFLTNVGSLLI STLMVGLAIVCAHGAFRVPEDLFLDEQEPMNTGFLSFLGGAAASAAAPAVARV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 78 | 78 | - | – | |
| PANTHER | 13 | 209 | 197 | 5.2E-99 | – | |
| PANTHER | 13 | 209 | 197 | 5.2E-99 | ||
| Pfam | 45 | 187 | 143 | 9.5E-46 | ||
| TMHMM | 77 | 96 | 20 | - | – | |
| Phobius | 79 | 97 | 19 | - | – | |
| Phobius | 98 | 102 | 5 | - | – | |
| TMHMM | 100 | 119 | 20 | - | – | |
| Phobius | 103 | 119 | 17 | - | – | |
| Phobius | 120 | 138 | 19 | - | – | |
| TMHMM | 139 | 170 | 32 | - | – | |
| Phobius | 139 | 170 | 32 | - | – | |
| Phobius | 171 | 189 | 19 | - | – | |
| TMHMM | 190 | 212 | 23 | - | – | |
| Phobius | 190 | 211 | 22 | - | – | |
| Phobius | 212 | 213 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0073200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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